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/ /_/ > | \// __ \| | / /_/ | | || |
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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
prime-phylo-1.0.11/CMakeLists.txt-22-
prime-phylo-1.0.11/CMakeLists.txt:23:include(${CMAKE_SOURCE_DIR}/cmake/macro.cmake)
prime-phylo-1.0.11/CMakeLists.txt-24-
##############################################
prime-phylo-1.0.11/src/cxx/libraries/prime/UniformDensity.hh-21- //! \f],
prime-phylo-1.0.11/src/cxx/libraries/prime/UniformDensity.hh:22: //! where \f$ \alpha = mean - \sqrt{3 variance} \f$,
prime-phylo-1.0.11/src/cxx/libraries/prime/UniformDensity.hh-23- //! \f$ \beta = mean + \sqrt{3 variance} \f$
##############################################
prime-phylo-1.0.11/src/cxx/tools/reconcile/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/reconcile/CMakeLists.txt-2-
##############################################
prime-phylo-1.0.11/src/cxx/tools/reroot/CMakeLists.txt-1-
prime-phylo-1.0.11/src/cxx/tools/reroot/CMakeLists.txt:2:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/reroot/CMakeLists.txt-3-
##############################################
prime-phylo-1.0.11/src/cxx/tools/showtree2/CMakeLists.txt-1-
prime-phylo-1.0.11/src/cxx/tools/showtree2/CMakeLists.txt:2:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/showtree2/CMakeLists.txt-3-
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prime-phylo-1.0.11/src/cxx/tools/showtree/CMakeLists.txt-1-
prime-phylo-1.0.11/src/cxx/tools/showtree/CMakeLists.txt:2:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/showtree/CMakeLists.txt-3-
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prime-phylo-1.0.11/src/cxx/tools/kambo/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/kambo/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/prime_generateTree/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/prime_generateTree/CMakeLists.txt-2-
##############################################
prime-phylo-1.0.11/src/cxx/tools/orthoFromOldPrIME/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/orthoFromOldPrIME/CMakeLists.txt-2-
##############################################
prime-phylo-1.0.11/src/cxx/tools/prime_s/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/prime_s/CMakeLists.txt-2-
##############################################
prime-phylo-1.0.11/src/cxx/tools/lsdcombine/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/lsdcombine/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/getwgd/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/getwgd/CMakeLists.txt-2-#does not compile right now
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prime-phylo-1.0.11/src/cxx/tools/readReconciliation/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/readReconciliation/CMakeLists.txt-2-#does not compile right now
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prime-phylo-1.0.11/src/cxx/tools/compute_ortho/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/compute_ortho/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/genGSR/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/genGSR/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/ortho_true_vertices/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/ortho_true_vertices/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/treesize/CMakeLists.txt-1-
prime-phylo-1.0.11/src/cxx/tools/treesize/CMakeLists.txt:2:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/treesize/CMakeLists.txt-3-
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prime-phylo-1.0.11/src/cxx/tools/chainsaw/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/chainsaw/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/fileformatconversion/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/fileformatconversion/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/tools/tree2leafnames/CMakeLists.txt-1-
prime-phylo-1.0.11/src/cxx/tools/tree2leafnames/CMakeLists.txt:2:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/tools/tree2leafnames/CMakeLists.txt-3-
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prime-phylo-1.0.11/src/cxx/test_applications/beep_generateTree/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/test_applications/beep_generateTree/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/test_applications/test_PhyloDAG/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/test_applications/test_PhyloDAG/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/test_applications/beep_generateSeqData/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/test_applications/beep_generateSeqData/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeGEMrec/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeGEMrec/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeDLRS/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeDLRS/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeCT/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeCT/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/mapdp/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/mapdp/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeRecon/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeRecon/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/prime_enumerate_reconciliations/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/prime_enumerate_reconciliations/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeDUP/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeDUP/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeDLRS-esjolund/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeDLRS-esjolund/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeDTLSR/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeDTLSR/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/cxx/applications/primeGEM/CMakeLists.txt:1:include(${CMAKE_SOURCE_DIR}/src/cxx/cmake-include.txt)
prime-phylo-1.0.11/src/cxx/applications/primeGEM/CMakeLists.txt-2-
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prime-phylo-1.0.11/src/perl/mcmc_analysis-833- close(F);
prime-phylo-1.0.11/src/perl/mcmc_analysis:834: system('gnuplot', $plotfile);
prime-phylo-1.0.11/src/perl/mcmc_analysis-835- open(T, "<$texfile") or die "No LaTeX file produced by gnuplot!";