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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
psortb-3.0.6+dfsg/Makefile.PL-20- my ($ver,$desc,$expl,$module) = split( /\// , $str);
psortb-3.0.6+dfsg/Makefile.PL:21: if( !eval "require($name)") {
psortb-3.0.6+dfsg/Makefile.PL-22- print "External Module $name, $desc, is not installed on this computer.\n The $module in PSortb needs it for $expl\n\n";
##############################################
psortb-3.0.6+dfsg/Makefile.PL-185- chdir "psort/conf/analysis/sclblast/gramneg";
psortb-3.0.6+dfsg/Makefile.PL:186: system("$BLASTDIR/formatdb -i sclblast -p T -o T");
psortb-3.0.6+dfsg/Makefile.PL-187- chdir "../grampos";
psortb-3.0.6+dfsg/Makefile.PL:188: system("$BLASTDIR/formatdb -i sclblast -p T -o T");
psortb-3.0.6+dfsg/Makefile.PL-189- chdir "../archaea";
psortb-3.0.6+dfsg/Makefile.PL:190: system("$BLASTDIR/formatdb -i sclblast -p T -o T");
psortb-3.0.6+dfsg/Makefile.PL-191- chdir "../../../../../";
##############################################
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Report/Formatter.pm-74- # Attempt to load the specified module.
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Report/Formatter.pm:75: eval("require Bio::Tools::PSort::Report::Formatter::$mod");
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Report/Formatter.pm-76- $self->throw("Failed to load module $mod: $@") if($@);
##############################################
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Pathway.pm-66-consists of the Regular Expression module. If the result returned from
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Pathway.pm:67:the Regexp module has score higher that 0.50 for the cytoplasm localization,
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Pathway.pm-68-then the subroutine will return true, and control flow will be directed
##############################################
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Constants.pm-49-
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Constants.pm:50:sub CYTOPLASM { return 'Cytoplasmic' }
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Constants.pm-51-sub CYTOPLASMIC { return 'Cytoplasmic' }
##############################################
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Module/Bayesian.pm-62-
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Module/Bayesian.pm:63: $self->{model} = eval($model);
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort/Module/Bayesian.pm-64- $self->throw("Error loading Bayesian model: $@") if($@);
##############################################
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort.pm-181- # Attempt to load the specified module.
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort.pm:182: eval("require Bio::Tools::PSort::Module::$mod");
psortb-3.0.6+dfsg/lib/Bio/Tools/PSort.pm-183- $self->throw("Failed to load module $mod: $@") if($@);
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-668-YISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:669:YISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-670-YISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-915-YEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:916:YEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-917-YEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-1070-YASG 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:1071:YASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-1072-YARE 4
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-2188-VSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:2189:VSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-2190-VSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-2668-VNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:2669:VNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-2670-VNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-4216-VASL 7
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:4217:VASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-4218-VASP 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-6352-TASL 4
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:6353:TASM 5
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-6354-TASML 4
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-7289-SNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:7290:SNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-7291-SNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-8044-SFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8045:SFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-8046-SFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-8392-SATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:8393:SATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-8394-SATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-9103-RRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:9104:RRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-9105-RRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-9259-RQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:9260:RQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-9261-RQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-10305-REKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:10306:REKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-10307-REKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-10542-RASI 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:10543:RASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-10544-RASS 4
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-11874-QEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:11875:QEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-11876-QEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-14309-NLYISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:14310:NLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-14311-NLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-15028-NDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15029:NDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-15030-NDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-15158-NAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:15159:NAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-15160-NAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-16159-MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:16160:MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-16161-MAKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-16301-LYISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:16302:LYISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-16303-LYISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-20117-KVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:20118:KVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-20119-KVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-20521-KRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:20522:KRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-20523-KRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-21331-KINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:21332:KINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-21333-KINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-21911-KDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:21912:KDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-21913-KDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-22727-ISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:22728:ISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-22729-ISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-23225-INAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:23226:INAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-23227-INAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-23730-IIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:23731:IIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-23732-IIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-24219-IEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:24220:IEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-24221-IEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-28373-GAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:28374:GAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-28375-GAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-28908-FSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:28909:FSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-28910-FSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-31516-EKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31517:EKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-31518-EKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-31617-EKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31618:EKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-31619-EKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-31678-EKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:31679:EKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-31680-EKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-32153-EGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:32154:EGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-32155-EGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-33085-DVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:33086:DVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-33087-DVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-35102-DAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35103:DAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-35104-DAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-35763-AYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:35764:AYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-35765-AYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-36219-ATAV 5
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36220:ATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-36221-ATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-36240-ASL 65
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36241:ASM 27
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-36242-ASN 21
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-36588-AREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:36589:AREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-36590-AREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-37489-AKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37490:AKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-37491-AKVNLYISNDAYEKINAIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-37855-AIIEKRRQEGAREKDVSFSATAS 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt:37856:AIIEKRRQEGAREKDVSFSATASM 3
psortb-3.0.6+dfsg/bio-tools-psort-svmloc/fre_patterns.txt-37857-AIIEKRRQEGAREKDVSFSATASML 3
##############################################
psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt-7682-ASL 22
psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt:7683:ASM 4
psortb-3.0.6+dfsg/psort/conf/analysis/subloc/grampos/Cytoplasmic/fre_patterns.txt-7684-ASN 8
##############################################
psortb-3.0.6+dfsg/debian/createmanpages-4-
psortb-3.0.6+dfsg/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
psortb-3.0.6+dfsg/debian/createmanpages-6-