=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== quorum-1.1.1/INSTALL-173-directory configuration variables that were expressed in terms of quorum-1.1.1/INSTALL:174:`${prefix}'. Any directories that were specified during `configure', quorum-1.1.1/INSTALL-175-but not in terms of `${prefix}', must each be overridden at install ############################################## quorum-1.1.1/paper/bmc_article.tex-372-% Starting from this anchor, \quorum will look at every base, extending toward the 5' and 3' ends, and decide to make a correction based on the $k$-mer ending at that base. quorum-1.1.1/paper/bmc_article.tex:373:% Let $m = xb$ bet the $k$-mer, where $|m| = k$, $x$ is a prefix with $|x| = k - 1$, and $b$ is the base under consideration. quorum-1.1.1/paper/bmc_article.tex-374-% If $m$ has a number of occurrences greater than $a$, then no correction is made. ############################################## quorum-1.1.1/paper/bmc_article.tex-400-As \quorum shifts the $k$-mer toward the 3' end one base at a time, it and decides whether to make a correction based on the $k$-mer ending at that base. quorum-1.1.1/paper/bmc_article.tex:401:Let $m = xb$ be the anchor $k$-mer, where the length $|m| = k$, and $x$ is a prefix with length $|x| = k - 1$, and $b$ is the base under consideration. quorum-1.1.1/paper/bmc_article.tex-402-If $m$ has a number of occurrences greater than $a$ in the entire database, then no correction is made; otherwise, the 3 possible alternative bases $b'$ are considered. ############################################## quorum-1.1.1/src/quorum.in-188- open STDOUT, '>&', $merge_write; quorum-1.1.1/src/quorum.in:189: exec($MERGE, @ARGV); quorum-1.1.1/src/quorum.in-190- exit(1); # Should not be reached ############################################## quorum-1.1.1/src/quorum.in-205- open STDERR, '>&', $error_log; quorum-1.1.1/src/quorum.in:206: exec(@ec_cmd, $db_file, "/dev/fd/0"); quorum-1.1.1/src/quorum.in-207- exit(1); # Should not be reached ############################################## quorum-1.1.1/src/quorum.in-219- open STDIN, '<&', $correct_read; quorum-1.1.1/src/quorum.in:220: exec($SPLIT, $prefix); quorum-1.1.1/src/quorum.in-221- exit(1); # Should not be reached ############################################## quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc-4252- } else { quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc:4253: printf(", where %s = %s\n", kTypeParamLabel, test_case.type_param()); quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc-4254- } ############################################## quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc-6033- // the output easy to parse by a program. quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc:6034: PrintOnOneLine(test_case->type_param(), kMaxParamLength); quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc-6035- } ############################################## quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc-6042- // output easy to parse by a program. quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc:6043: PrintOnOneLine(test_info->value_param(), kMaxParamLength); quorum-1.1.1/unit_tests/gtest/src/gtest-all.cc-6044- } ############################################## quorum-1.1.1/debian/createmanpages-4- quorum-1.1.1/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'` quorum-1.1.1/debian/createmanpages-6-