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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-bioc-affy-1.68.0/configure-67- case "$ac_option" in
r-bioc-affy-1.68.0/configure:68: -*=*) ac_optarg=`echo "$ac_option" | sed 's/[-_a-zA-Z0-9]*=//'` ;;
r-bioc-affy-1.68.0/configure-69- *) ac_optarg= ;;
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r-bioc-affy-1.68.0/configure-99- -disable-* | --disable-*)
r-bioc-affy-1.68.0/configure:100: ac_feature=`echo $ac_option|sed -e 's/-*disable-//'`
r-bioc-affy-1.68.0/configure-101- # Reject names that are not valid shell variable names.
r-bioc-affy-1.68.0/configure:102: if test -n "`echo $ac_feature| sed 's/[-a-zA-Z0-9_]//g'`"; then
r-bioc-affy-1.68.0/configure-103- { echo "configure: error: $ac_feature: invalid feature name" 1>&2; exit 1; }
r-bioc-affy-1.68.0/configure-104- fi
r-bioc-affy-1.68.0/configure:105: ac_feature=`echo $ac_feature| sed 's/-/_/g'`
r-bioc-affy-1.68.0/configure-106- eval "enable_${ac_feature}=no" ;;
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r-bioc-affy-1.68.0/configure-108- -enable-* | --enable-*)
r-bioc-affy-1.68.0/configure:109: ac_feature=`echo $ac_option|sed -e 's/-*enable-//' -e 's/=.*//'`
r-bioc-affy-1.68.0/configure-110- # Reject names that are not valid shell variable names.
r-bioc-affy-1.68.0/configure:111: if test -n "`echo $ac_feature| sed 's/[-_a-zA-Z0-9]//g'`"; then
r-bioc-affy-1.68.0/configure-112- { echo "configure: error: $ac_feature: invalid feature name" 1>&2; exit 1; }
r-bioc-affy-1.68.0/configure-113- fi
r-bioc-affy-1.68.0/configure:114: ac_feature=`echo $ac_feature| sed 's/-/_/g'`
r-bioc-affy-1.68.0/configure-115- case "$ac_option" in
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r-bioc-affy-1.68.0/configure-339- -with-* | --with-*)
r-bioc-affy-1.68.0/configure:340: ac_package=`echo $ac_option|sed -e 's/-*with-//' -e 's/=.*//'`
r-bioc-affy-1.68.0/configure-341- # Reject names that are not valid shell variable names.
r-bioc-affy-1.68.0/configure:342: if test -n "`echo $ac_package| sed 's/[-_a-zA-Z0-9]//g'`"; then
r-bioc-affy-1.68.0/configure-343- { echo "configure: error: $ac_package: invalid package name" 1>&2; exit 1; }
r-bioc-affy-1.68.0/configure-344- fi
r-bioc-affy-1.68.0/configure:345: ac_package=`echo $ac_package| sed 's/-/_/g'`
r-bioc-affy-1.68.0/configure-346- case "$ac_option" in
##############################################
r-bioc-affy-1.68.0/configure-352- -without-* | --without-*)
r-bioc-affy-1.68.0/configure:353: ac_package=`echo $ac_option|sed -e 's/-*without-//'`
r-bioc-affy-1.68.0/configure-354- # Reject names that are not valid shell variable names.
r-bioc-affy-1.68.0/configure:355: if test -n "`echo $ac_package| sed 's/[-a-zA-Z0-9_]//g'`"; then
r-bioc-affy-1.68.0/configure-356- { echo "configure: error: $ac_package: invalid package name" 1>&2; exit 1; }
r-bioc-affy-1.68.0/configure-357- fi
r-bioc-affy-1.68.0/configure:358: ac_package=`echo $ac_package| sed 's/-/_/g'`
r-bioc-affy-1.68.0/configure-359- eval "with_${ac_package}=no" ;;
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r-bioc-affy-1.68.0/configure-382- *)
r-bioc-affy-1.68.0/configure:383: if test -n "`echo $ac_option| sed 's/[-a-z0-9.]//g'`"; then
r-bioc-affy-1.68.0/configure-384- echo "configure: warning: $ac_option: invalid host type" 1>&2
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r-bioc-affy-1.68.0/configure-395-if test -n "$ac_prev"; then
r-bioc-affy-1.68.0/configure:396: { echo "configure: error: missing argument to --`echo $ac_prev | sed 's/_/-/g'`" 1>&2; exit 1; }
r-bioc-affy-1.68.0/configure-397-fi
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r-bioc-affy-1.68.0/configure-460- ac_prog=$0
r-bioc-affy-1.68.0/configure:461: ac_confdir=`echo $ac_prog|sed 's%/[^/][^/]*$%%'`
r-bioc-affy-1.68.0/configure-462- test "x$ac_confdir" = "x$ac_prog" && ac_confdir=.
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r-bioc-affy-1.68.0/configure-476-fi
r-bioc-affy-1.68.0/configure:477:srcdir=`echo "${srcdir}" | sed 's%\([^/]\)/*$%\1%'`
r-bioc-affy-1.68.0/configure-478-
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r-bioc-affy-1.68.0/configure-534-if test -z "$CPP"; then
r-bioc-affy-1.68.0/configure:535:if eval "test \"`echo '$''{'ac_cv_prog_CPP'+set}'`\" = set"; then
r-bioc-affy-1.68.0/configure-536- echo $ac_n "(cached) $ac_c" 1>&6
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r-bioc-affy-1.68.0/configure-550-{ (eval echo configure:551: \"$ac_try\") 1>&5; (eval $ac_try) 2>&5; }
r-bioc-affy-1.68.0/configure:551:ac_err=`grep -v '^ *+' conftest.out | grep -v "^conftest.${ac_ext}\$"`
r-bioc-affy-1.68.0/configure-552-if test -z "$ac_err"; then
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r-bioc-affy-1.68.0/configure-567-{ (eval echo configure:568: \"$ac_try\") 1>&5; (eval $ac_try) 2>&5; }
r-bioc-affy-1.68.0/configure:568:ac_err=`grep -v '^ *+' conftest.out | grep -v "^conftest.${ac_ext}\$"`
r-bioc-affy-1.68.0/configure-569-if test -z "$ac_err"; then
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r-bioc-affy-1.68.0/configure-584-{ (eval echo configure:585: \"$ac_try\") 1>&5; (eval $ac_try) 2>&5; }
r-bioc-affy-1.68.0/configure:585:ac_err=`grep -v '^ *+' conftest.out | grep -v "^conftest.${ac_ext}\$"`
r-bioc-affy-1.68.0/configure-586-if test -z "$ac_err"; then
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r-bioc-affy-1.68.0/configure-612-ac_lib_var=`echo z'_'main | sed 'y%./+-%__p_%'`
r-bioc-affy-1.68.0/configure:613:if eval "test \"`echo '$''{'ac_cv_lib_$ac_lib_var'+set}'`\" = set"; then
r-bioc-affy-1.68.0/configure-614- echo $ac_n "(cached) $ac_c" 1>&6
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r-bioc-affy-1.68.0/configure-638-fi
r-bioc-affy-1.68.0/configure:639:if eval "test \"`echo '$ac_cv_lib_'$ac_lib_var`\" = yes"; then
r-bioc-affy-1.68.0/configure-640- echo "$ac_t""yes" 1>&6
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r-bioc-affy-1.68.0/configure-644-echo "configure:645: checking for zlib.h" >&5
r-bioc-affy-1.68.0/configure:645:if eval "test \"`echo '$''{'ac_cv_header_$ac_safe'+set}'`\" = set"; then
r-bioc-affy-1.68.0/configure-646- echo $ac_n "(cached) $ac_c" 1>&6
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r-bioc-affy-1.68.0/configure-654-{ (eval echo configure:655: \"$ac_try\") 1>&5; (eval $ac_try) 2>&5; }
r-bioc-affy-1.68.0/configure:655:ac_err=`grep -v '^ *+' conftest.out | grep -v "^conftest.${ac_ext}\$"`
r-bioc-affy-1.68.0/configure-656-if test -z "$ac_err"; then
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r-bioc-affy-1.68.0/configure-667-fi
r-bioc-affy-1.68.0/configure:668:if eval "test \"`echo '$ac_cv_header_'$ac_safe`\" = yes"; then
r-bioc-affy-1.68.0/configure-669- echo "$ac_t""yes" 1>&6
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r-bioc-affy-1.68.0/configure-897- fi
r-bioc-affy-1.68.0/configure:898: ac_file=`expr $ac_file + 1`
r-bioc-affy-1.68.0/configure-899- ac_beg=$ac_end
r-bioc-affy-1.68.0/configure:900: ac_end=`expr $ac_end + $ac_max_sed_cmds`
r-bioc-affy-1.68.0/configure-901- fi
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r-bioc-affy-1.68.0/configure-915- case "$ac_file" in
r-bioc-affy-1.68.0/configure:916: *:*) ac_file_in=`echo "$ac_file"|sed 's%[^:]*:%%'`
r-bioc-affy-1.68.0/configure:917: ac_file=`echo "$ac_file"|sed 's%:.*%%'` ;;
r-bioc-affy-1.68.0/configure-918- *) ac_file_in="${ac_file}.in" ;;
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r-bioc-affy-1.68.0/configure-923- # Remove last slash and all that follows it. Not all systems have dirname.
r-bioc-affy-1.68.0/configure:924: ac_dir=`echo $ac_file|sed 's%/[^/][^/]*$%%'`
r-bioc-affy-1.68.0/configure-925- if test "$ac_dir" != "$ac_file" && test "$ac_dir" != .; then
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r-bioc-affy-1.68.0/configure-927- test ! -d "$ac_dir" && mkdir "$ac_dir"
r-bioc-affy-1.68.0/configure:928: ac_dir_suffix="/`echo $ac_dir|sed 's%^\./%%'`"
r-bioc-affy-1.68.0/configure-929- # A "../" for each directory in $ac_dir_suffix.
r-bioc-affy-1.68.0/configure:930: ac_dots=`echo $ac_dir_suffix|sed 's%/[^/]*%../%g'`
r-bioc-affy-1.68.0/configure-931- else
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r-bioc-affy-1.68.0/configure-937- if test -z "$ac_dots"; then top_srcdir=.
r-bioc-affy-1.68.0/configure:938: else top_srcdir=`echo $ac_dots|sed 's%/$%%'`; fi ;;
r-bioc-affy-1.68.0/configure-939- /*) srcdir="$ac_given_srcdir$ac_dir_suffix"; top_srcdir="$ac_given_srcdir" ;;
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r-bioc-affy-1.68.0/configure-947- rm -f "$ac_file"
r-bioc-affy-1.68.0/configure:948: configure_input="Generated automatically from `echo $ac_file_in|sed 's%.*/%%'` by configure."
r-bioc-affy-1.68.0/configure-949- case "$ac_file" in
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r-bioc-affy-1.68.0/configure-954-
r-bioc-affy-1.68.0/configure:955: ac_file_inputs=`echo $ac_file_in|sed -e "s%^%$ac_given_srcdir/%" -e "s%:% $ac_given_srcdir/%g"`
r-bioc-affy-1.68.0/configure-956- sed -e "$ac_comsub
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r-bioc-affy-1.68.0/inst/doc/builtinMethods.Rnw-76-\end{equation*}
r-bioc-affy-1.68.0/inst/doc/builtinMethods.Rnw:77:where $a = s- \mu - \sigma^2\alpha$ and $b = \sigma$. Note that
r-bioc-affy-1.68.0/inst/doc/builtinMethods.Rnw-78-$\phi$ and $\Phi$ are the standard normal distribution density and
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r-bioc-affy-1.68.0/vignettes/builtinMethods.Rnw-76-\end{equation*}
r-bioc-affy-1.68.0/vignettes/builtinMethods.Rnw:77:where $a = s- \mu - \sigma^2\alpha$ and $b = \sigma$. Note that
r-bioc-affy-1.68.0/vignettes/builtinMethods.Rnw-78-$\phi$ and $\Phi$ are the standard normal distribution density and
##############################################
r-bioc-affy-1.68.0/debian/tests/run-unit-test-3-oname=affy
r-bioc-affy-1.68.0/debian/tests/run-unit-test:4:pkg=r-bioc-`echo $oname | tr [A-Z] [a-z]`
r-bioc-affy-1.68.0/debian/tests/run-unit-test-5-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
r-bioc-affy-1.68.0/debian/tests/run-unit-test:6: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
r-bioc-affy-1.68.0/debian/tests/run-unit-test-7-fi