===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-bioc-biocparallel-1.24.1/R/bpaggregate-methods.R-70- m <- match.call(expand.dots=FALSE)
r-bioc-biocparallel-1.24.1/R/bpaggregate-methods.R:71: if (is.matrix(eval(m$data, parent.frame())))
r-bioc-biocparallel-1.24.1/R/bpaggregate-methods.R-72- m$data <- as.data.frame(data)
##############################################
r-bioc-biocparallel-1.24.1/configure-43-if test -z "$BASH_VERSION$ZSH_VERSION" \
r-bioc-biocparallel-1.24.1/configure:44: && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-biocparallel-1.24.1/configure-45- as_echo='print -r --'
r-bioc-biocparallel-1.24.1/configure-46- as_echo_n='print -rn --'
r-bioc-biocparallel-1.24.1/configure:47:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-biocparallel-1.24.1/configure-48- as_echo='printf %s\n'
##############################################
r-bioc-biocparallel-1.24.1/configure-50-else
r-bioc-biocparallel-1.24.1/configure:51: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
r-bioc-biocparallel-1.24.1/configure-52- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
r-bioc-biocparallel-1.24.1/configure-60- expr "X$arg" : "X\\(.*\\)$as_nl";
r-bioc-biocparallel-1.24.1/configure:61: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
r-bioc-biocparallel-1.24.1/configure-62- esac;
##############################################
r-bioc-biocparallel-1.24.1/configure-197- eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
r-bioc-biocparallel-1.24.1/configure:198: test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1"
r-bioc-biocparallel-1.24.1/configure-199- if (eval "$as_required") 2>/dev/null; then :
##############################################
r-bioc-biocparallel-1.24.1/configure-323- case $as_dir in #(
r-bioc-biocparallel-1.24.1/configure:324: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
r-bioc-biocparallel-1.24.1/configure-325- *) as_qdir=$as_dir;;
##############################################
r-bioc-biocparallel-1.24.1/configure-396- {
r-bioc-biocparallel-1.24.1/configure:397: as_val=`expr "$@" || test $? -eq 1`
r-bioc-biocparallel-1.24.1/configure-398- }
##############################################
r-bioc-biocparallel-1.24.1/configure-403-# ----------------------------------------
r-bioc-biocparallel-1.24.1/configure:404:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
r-bioc-biocparallel-1.24.1/configure-405-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
r-bioc-biocparallel-1.24.1/configure-466- eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
r-bioc-biocparallel-1.24.1/configure:467: test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
r-bioc-biocparallel-1.24.1/configure-468- # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-)
##############################################
r-bioc-biocparallel-1.24.1/configure-704- case $ac_option in
r-bioc-biocparallel-1.24.1/configure:705: *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
r-bioc-biocparallel-1.24.1/configure-706- *=) ac_optarg= ;;
##############################################
r-bioc-biocparallel-1.24.1/configure-748- -disable-* | --disable-*)
r-bioc-biocparallel-1.24.1/configure:749: ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
r-bioc-biocparallel-1.24.1/configure-750- # Reject names that are not valid shell variable names.
##############################################
r-bioc-biocparallel-1.24.1/configure-753- ac_useropt_orig=$ac_useropt
r-bioc-biocparallel-1.24.1/configure:754: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-biocparallel-1.24.1/configure-755- case $ac_user_opts in
##############################################
r-bioc-biocparallel-1.24.1/configure-774- -enable-* | --enable-*)
r-bioc-biocparallel-1.24.1/configure:775: ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
r-bioc-biocparallel-1.24.1/configure-776- # Reject names that are not valid shell variable names.
##############################################
r-bioc-biocparallel-1.24.1/configure-779- ac_useropt_orig=$ac_useropt
r-bioc-biocparallel-1.24.1/configure:780: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-biocparallel-1.24.1/configure-781- case $ac_user_opts in
##############################################
r-bioc-biocparallel-1.24.1/configure-978- -with-* | --with-*)
r-bioc-biocparallel-1.24.1/configure:979: ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
r-bioc-biocparallel-1.24.1/configure-980- # Reject names that are not valid shell variable names.
##############################################
r-bioc-biocparallel-1.24.1/configure-983- ac_useropt_orig=$ac_useropt
r-bioc-biocparallel-1.24.1/configure:984: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-biocparallel-1.24.1/configure-985- case $ac_user_opts in
##############################################
r-bioc-biocparallel-1.24.1/configure-994- -without-* | --without-*)
r-bioc-biocparallel-1.24.1/configure:995: ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
r-bioc-biocparallel-1.24.1/configure-996- # Reject names that are not valid shell variable names.
##############################################
r-bioc-biocparallel-1.24.1/configure-999- ac_useropt_orig=$ac_useropt
r-bioc-biocparallel-1.24.1/configure:1000: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-biocparallel-1.24.1/configure-1001- case $ac_user_opts in
##############################################
r-bioc-biocparallel-1.24.1/configure-1032- *=*)
r-bioc-biocparallel-1.24.1/configure:1033: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
r-bioc-biocparallel-1.24.1/configure-1034- # Reject names that are not valid shell variable names.
##############################################
r-bioc-biocparallel-1.24.1/configure-1053-if test -n "$ac_prev"; then
r-bioc-biocparallel-1.24.1/configure:1054: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
r-bioc-biocparallel-1.24.1/configure-1055- as_fn_error $? "missing argument to $ac_option"
##############################################
r-bioc-biocparallel-1.24.1/configure-1075- */ )
r-bioc-biocparallel-1.24.1/configure:1076: ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
r-bioc-biocparallel-1.24.1/configure-1077- eval $ac_var=\$ac_val;;
##############################################
r-bioc-biocparallel-1.24.1/configure-1110-ac_ls_di=`ls -di .` &&
r-bioc-biocparallel-1.24.1/configure:1111:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
r-bioc-biocparallel-1.24.1/configure-1112- as_fn_error $? "working directory cannot be determined"
##############################################
r-bioc-biocparallel-1.24.1/configure-1166-case $srcdir in
r-bioc-biocparallel-1.24.1/configure:1167:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
r-bioc-biocparallel-1.24.1/configure-1168-esac
##############################################
r-bioc-biocparallel-1.24.1/configure-1209-By default, \`make install' will install all the files in
r-bioc-biocparallel-1.24.1/configure:1210:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
r-bioc-biocparallel-1.24.1/configure:1211:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
r-bioc-biocparallel-1.24.1/configure-1212-for instance \`--prefix=\$HOME'.
##############################################
r-bioc-biocparallel-1.24.1/configure-1275-*)
r-bioc-biocparallel-1.24.1/configure:1276: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
r-bioc-biocparallel-1.24.1/configure-1277- # A ".." for each directory in $ac_dir_suffix.
r-bioc-biocparallel-1.24.1/configure:1278: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
r-bioc-biocparallel-1.24.1/configure-1279- case $ac_top_builddir_sub in
##############################################
r-bioc-biocparallel-1.24.1/configure-1495- *\'*)
r-bioc-biocparallel-1.24.1/configure:1496: ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-biocparallel-1.24.1/configure-1497- esac
##############################################
r-bioc-biocparallel-1.24.1/configure-1578- case $ac_val in
r-bioc-biocparallel-1.24.1/configure:1579: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
r-bioc-biocparallel-1.24.1/configure-1580- esac
##############################################
r-bioc-biocparallel-1.24.1/configure-1593- case $ac_val in
r-bioc-biocparallel-1.24.1/configure:1594: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
r-bioc-biocparallel-1.24.1/configure-1595- esac
##############################################
r-bioc-biocparallel-1.24.1/configure-1713- set,)
r-bioc-biocparallel-1.24.1/configure:1714: { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
r-bioc-biocparallel-1.24.1/configure:1715:$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
r-bioc-biocparallel-1.24.1/configure-1716- ac_cache_corrupted=: ;;
##############################################
r-bioc-biocparallel-1.24.1/configure-1724- # differences in whitespace do not lead to failure.
r-bioc-biocparallel-1.24.1/configure:1725: ac_old_val_w=`echo x $ac_old_val`
r-bioc-biocparallel-1.24.1/configure:1726: ac_new_val_w=`echo x $ac_new_val`
r-bioc-biocparallel-1.24.1/configure-1727- if test "$ac_old_val_w" != "$ac_new_val_w"; then
##############################################
r-bioc-biocparallel-1.24.1/configure-1744- case $ac_new_val in
r-bioc-biocparallel-1.24.1/configure:1745: *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-biocparallel-1.24.1/configure-1746- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
r-bioc-biocparallel-1.24.1/configure-2117-$as_echo_n "checking whether the C compiler works... " >&6; }
r-bioc-biocparallel-1.24.1/configure:2118:ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
r-bioc-biocparallel-1.24.1/configure-2119-
##############################################
r-bioc-biocparallel-1.24.1/configure-2161- then :; else
r-bioc-biocparallel-1.24.1/configure:2162: ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
r-bioc-biocparallel-1.24.1/configure-2163- fi
##############################################
r-bioc-biocparallel-1.24.1/configure-2221- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
r-bioc-biocparallel-1.24.1/configure:2222: *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
r-bioc-biocparallel-1.24.1/configure-2223- break;;
##############################################
r-bioc-biocparallel-1.24.1/configure-2330- *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
r-bioc-biocparallel-1.24.1/configure:2331: *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
r-bioc-biocparallel-1.24.1/configure-2332- break;;
##############################################
r-bioc-biocparallel-1.24.1/configure-2734-'
r-bioc-biocparallel-1.24.1/configure:2735:DEFS=`sed -n "$ac_script" confdefs.h`
r-bioc-biocparallel-1.24.1/configure-2736-
##############################################
r-bioc-biocparallel-1.24.1/configure-2743- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
r-bioc-biocparallel-1.24.1/configure:2744: ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
r-bioc-biocparallel-1.24.1/configure-2745- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
r-bioc-biocparallel-1.24.1/configure-2810-if test -z "$BASH_VERSION$ZSH_VERSION" \
r-bioc-biocparallel-1.24.1/configure:2811: && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-biocparallel-1.24.1/configure-2812- as_echo='print -r --'
r-bioc-biocparallel-1.24.1/configure-2813- as_echo_n='print -rn --'
r-bioc-biocparallel-1.24.1/configure:2814:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-biocparallel-1.24.1/configure-2815- as_echo='printf %s\n'
##############################################
r-bioc-biocparallel-1.24.1/configure-2817-else
r-bioc-biocparallel-1.24.1/configure:2818: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
r-bioc-biocparallel-1.24.1/configure-2819- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
r-bioc-biocparallel-1.24.1/configure-2827- expr "X$arg" : "X\\(.*\\)$as_nl";
r-bioc-biocparallel-1.24.1/configure:2828: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
r-bioc-biocparallel-1.24.1/configure-2829- esac;
##############################################
r-bioc-biocparallel-1.24.1/configure-2904-# ----------------------------------------
r-bioc-biocparallel-1.24.1/configure:2905:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
r-bioc-biocparallel-1.24.1/configure-2906-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
r-bioc-biocparallel-1.24.1/configure-2976- {
r-bioc-biocparallel-1.24.1/configure:2977: as_val=`expr "$@" || test $? -eq 1`
r-bioc-biocparallel-1.24.1/configure-2978- }
##############################################
r-bioc-biocparallel-1.24.1/configure-3080- case $as_dir in #(
r-bioc-biocparallel-1.24.1/configure:3081: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
r-bioc-biocparallel-1.24.1/configure-3082- *) as_qdir=$as_dir;;
##############################################
r-bioc-biocparallel-1.24.1/configure-3202-cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
r-bioc-biocparallel-1.24.1/configure:3203:ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
r-bioc-biocparallel-1.24.1/configure-3204-ac_cs_version="\\
##############################################
r-bioc-biocparallel-1.24.1/configure-3224- --*=?*)
r-bioc-biocparallel-1.24.1/configure:3225: ac_option=`expr "X$1" : 'X\([^=]*\)='`
r-bioc-biocparallel-1.24.1/configure:3226: ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
r-bioc-biocparallel-1.24.1/configure-3227- ac_shift=:
##############################################
r-bioc-biocparallel-1.24.1/configure-3229- --*=)
r-bioc-biocparallel-1.24.1/configure:3230: ac_option=`expr "X$1" : 'X\([^=]*\)='`
r-bioc-biocparallel-1.24.1/configure-3231- ac_optarg=
##############################################
r-bioc-biocparallel-1.24.1/configure-3253- case $ac_optarg in
r-bioc-biocparallel-1.24.1/configure:3254: *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-biocparallel-1.24.1/configure-3255- '') as_fn_error $? "missing file argument" ;;
##############################################
r-bioc-biocparallel-1.24.1/configure-3369-fi
r-bioc-biocparallel-1.24.1/configure:3370:ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
r-bioc-biocparallel-1.24.1/configure-3371-if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
##############################################
r-bioc-biocparallel-1.24.1/configure-3386- as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
r-bioc-biocparallel-1.24.1/configure:3387:ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
r-bioc-biocparallel-1.24.1/configure-3388-ac_delim='%!_!# '
##############################################
r-bioc-biocparallel-1.24.1/configure-3392-
r-bioc-biocparallel-1.24.1/configure:3393: ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
r-bioc-biocparallel-1.24.1/configure-3394- if test $ac_delim_n = $ac_delim_num; then
##############################################
r-bioc-biocparallel-1.24.1/configure-3554- esac
r-bioc-biocparallel-1.24.1/configure:3555: case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
r-bioc-biocparallel-1.24.1/configure-3556- as_fn_append ac_file_inputs " '$ac_f'"
##############################################
r-bioc-biocparallel-1.24.1/configure-3613-*)
r-bioc-biocparallel-1.24.1/configure:3614: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
r-bioc-biocparallel-1.24.1/configure-3615- # A ".." for each directory in $ac_dir_suffix.
r-bioc-biocparallel-1.24.1/configure:3616: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
r-bioc-biocparallel-1.24.1/configure-3617- case $ac_top_builddir_sub in
##############################################
r-bioc-biocparallel-1.24.1/configure-3665-/@mandir@/p'
r-bioc-biocparallel-1.24.1/configure:3666:case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
r-bioc-biocparallel-1.24.1/configure-3667-*datarootdir*) ac_datarootdir_seen=yes;;
##############################################
r-bioc-biocparallel-1.24.1/configure-3682-
r-bioc-biocparallel-1.24.1/configure:3683:# Neutralize VPATH when `$srcdir' = `.'.
r-bioc-biocparallel-1.24.1/configure-3684-# Shell code in configure.ac might set extrasub.
##############################################
r-bioc-biocparallel-1.24.1/configure-3708-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
r-bioc-biocparallel-1.24.1/configure:3709: { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
r-bioc-biocparallel-1.24.1/configure-3710- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \