===========================================================
.___ __ __
_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-bioc-rtracklayer-1.50.0/R/index.R-70- indexed <- NULL
r-bioc-rtracklayer-1.50.0/R/index.R:71: formats <- eval(formals(indexTabix)$format)
r-bioc-rtracklayer-1.50.0/R/index.R-72- uri <- path(con)
##############################################
r-bioc-rtracklayer-1.50.0/src/bigWig.c-153- if (r_sections != R_NilValue) {
r-bioc-rtracklayer-1.50.0/src/bigWig.c:154: sections = R_ExternalPtrAddr(r_sections);
r-bioc-rtracklayer-1.50.0/src/bigWig.c:155: lm = R_ExternalPtrAddr(R_ExternalPtrTag(r_sections));
r-bioc-rtracklayer-1.50.0/src/bigWig.c-156- } else lm = lmInit(0);
##############################################
r-bioc-rtracklayer-1.50.0/src/bigWig.c-187- if (r_sections != R_NilValue) {
r-bioc-rtracklayer-1.50.0/src/bigWig.c:188: sections = R_ExternalPtrAddr(r_sections);
r-bioc-rtracklayer-1.50.0/src/bigWig.c-189- slReverse(§ions);
##############################################
r-bioc-rtracklayer-1.50.0/src/bigWig.c-205- if (r_sections != R_NilValue) {
r-bioc-rtracklayer-1.50.0/src/bigWig.c:206: struct lm *lm = R_ExternalPtrAddr(R_ExternalPtrTag(r_sections));
r-bioc-rtracklayer-1.50.0/src/bigWig.c-207- lmCleanup(&lm);
##############################################
r-bioc-rtracklayer-1.50.0/src/twoBit.c-48- for (int i = 0; i < length(r_twoBits); i++)
r-bioc-rtracklayer-1.50.0/src/twoBit.c:49: slAddHead(&twoBits, R_ExternalPtrAddr(VECTOR_ELT(r_twoBits, i)));
r-bioc-rtracklayer-1.50.0/src/twoBit.c-50- slReverse(&twoBits);
##############################################
r-bioc-rtracklayer-1.50.0/src/ucsc/cheapcgi.h-113-
r-bioc-rtracklayer-1.50.0/src/ucsc/cheapcgi.h:114:char *cgiRemoteAddr();
r-bioc-rtracklayer-1.50.0/src/ucsc/cheapcgi.h-115-/* Return IP address of client (or "unknown"). */
##############################################
r-bioc-rtracklayer-1.50.0/src/ucsc/oswin9x.c-71- /*
r-bioc-rtracklayer-1.50.0/src/ucsc/oswin9x.c:72: __asm { int 3 }
r-bioc-rtracklayer-1.50.0/src/ucsc/oswin9x.c-73- */
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-54--if test -z "$BASH_VERSION$ZSH_VERSION" \
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:55:- && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-56-- as_echo='print -r --'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-57-- as_echo_n='print -rn --'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:58:-elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-59-- as_echo='printf %s\n'
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-61--else
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:62:- if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-63-- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-71-- expr "X$arg" : "X\\(.*\\)$as_nl";
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:72:- arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-73-- esac;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-208-- eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:209:- test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1"
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-210-- if (eval "$as_required") 2>/dev/null; then :
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-334-- case $as_dir in #(
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:335:- *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-336-- *) as_qdir=$as_dir;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-407-- {
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:408:- as_val=`expr "$@" || test $? -eq 1`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-409-- }
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-414--# ----------------------------------------
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:415:-# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-416--# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-477-- eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:478:- test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-479-- # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-)
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-714-- case $ac_option in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:715:- *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-716-- *=) ac_optarg= ;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-758-- -disable-* | --disable-*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:759:- ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-760-- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-763-- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:764:- ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-765-- case $ac_user_opts in
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-784-- -enable-* | --enable-*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:785:- ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-786-- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-789-- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:790:- ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-791-- case $ac_user_opts in
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-988-- -with-* | --with-*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:989:- ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-990-- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-993-- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:994:- ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-995-- case $ac_user_opts in
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1004-- -without-* | --without-*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1005:- ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1006-- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1009-- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1010:- ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1011-- case $ac_user_opts in
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1042-- *=*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1043:- ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1044-- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1063--if test -n "$ac_prev"; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1064:- ac_option=--`echo $ac_prev | sed 's/_/-/g'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1065-- as_fn_error $? "missing argument to $ac_option"
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1085-- */ )
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1086:- ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1087-- eval $ac_var=\$ac_val;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1120--ac_ls_di=`ls -di .` &&
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1121:-ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1122-- as_fn_error $? "working directory cannot be determined"
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1176--case $srcdir in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1177:-*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1178--esac
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1219--By default, \`make install' will install all the files in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1220:-\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1221:-an installation prefix other than \`$ac_default_prefix' using \`--prefix',
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1222--for instance \`--prefix=\$HOME'.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1285--*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1286:- ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1287-- # A ".." for each directory in $ac_dir_suffix.
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1288:- ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1289-- case $ac_top_builddir_sub in
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1421-- *\'*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1422:- ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1423-- esac
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1504-- case $ac_val in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1505:- *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1506-- esac
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1519-- case $ac_val in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1520:- *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1521-- esac
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1639-- set,)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1640:- { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1641:-$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1642-- ac_cache_corrupted=: ;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1650-- # differences in whitespace do not lead to failure.
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1651:- ac_old_val_w=`echo x $ac_old_val`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1652:- ac_new_val_w=`echo x $ac_new_val`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1653-- if test "$ac_old_val_w" != "$ac_new_val_w"; then
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1670-- case $ac_new_val in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1671:- *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1672-- *) ac_arg=$ac_var=$ac_new_val ;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1838-- test $ac_status = 0; }; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1839:- pkg_cv_OPENSSL_CFLAGS=`$PKG_CONFIG --cflags "openssl >= 1.0" 2>/dev/null`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1840-- test "x$?" != "x0" && pkg_failed=yes
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1855-- test $ac_status = 0; }; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1856:- pkg_cv_OPENSSL_LIBS=`$PKG_CONFIG --libs "openssl >= 1.0" 2>/dev/null`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1857-- test "x$?" != "x0" && pkg_failed=yes
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1876-- if test $_pkg_short_errors_supported = yes; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1877:- OPENSSL_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "openssl >= 1.0" 2>&1`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1878-- else
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:1879:- OPENSSL_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "openssl >= 1.0" 2>&1`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-1880-- fi
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2029--'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2030:-DEFS=`sed -n "$ac_script" confdefs.h`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2031--
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2038-- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2039:- ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2040-- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2105--if test -z "$BASH_VERSION$ZSH_VERSION" \
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2106:- && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2107-- as_echo='print -r --'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2108-- as_echo_n='print -rn --'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2109:-elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2110-- as_echo='printf %s\n'
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2112--else
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2113:- if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2114-- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2122-- expr "X$arg" : "X\\(.*\\)$as_nl";
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2123:- arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2124-- esac;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2199--# ----------------------------------------
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2200:-# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2201--# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2271-- {
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2272:- as_val=`expr "$@" || test $? -eq 1`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2273-- }
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2375-- case $as_dir in #(
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2376:- *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2377-- *) as_qdir=$as_dir;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2497--cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2498:-ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2499--ac_cs_version="\\
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2519-- --*=?*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2520:- ac_option=`expr "X$1" : 'X\([^=]*\)='`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2521:- ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2522-- ac_shift=:
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2524-- --*=)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2525:- ac_option=`expr "X$1" : 'X\([^=]*\)='`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2526-- ac_optarg=
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2548-- case $ac_optarg in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2549:- *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2550-- '') as_fn_error $? "missing file argument" ;;
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r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2664--fi
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2665:-ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2666--if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2681-- as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2682:-ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2683--ac_delim='%!_!# '
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2687--
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2688:- ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2689-- if test $ac_delim_n = $ac_delim_num; then
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2849-- esac
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2850:- case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2851-- as_fn_append ac_file_inputs " '$ac_f'"
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2908--*)
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2909:- ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2910-- # A ".." for each directory in $ac_dir_suffix.
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2911:- ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2912-- case $ac_top_builddir_sub in
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2960--/@mandir@/p'
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2961:-case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2962--*datarootdir*) ac_datarootdir_seen=yes;;
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2977--
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:2978:-# Neutralize VPATH when `$srcdir' = `.'.
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-2979--# Shell code in configure.ac might set extrasub.
##############################################
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-3003--test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch:3004:- { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
r-bioc-rtracklayer-1.50.0/debian/patches/delete_configure.patch-3005-- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-43-if test -z "$BASH_VERSION$ZSH_VERSION" \
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:44: && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-45- as_echo='print -r --'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-46- as_echo_n='print -rn --'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:47:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-48- as_echo='printf %s\n'
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-50-else
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:51: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-52- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-60- expr "X$arg" : "X\\(.*\\)$as_nl";
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:61: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-62- esac;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-197- eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" &&
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:198: test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1"
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-199- if (eval "$as_required") 2>/dev/null; then :
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-323- case $as_dir in #(
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:324: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-325- *) as_qdir=$as_dir;;
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-396- {
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:397: as_val=`expr "$@" || test $? -eq 1`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-398- }
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-403-# ----------------------------------------
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:404:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-405-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-466- eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:467: test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-468- # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-)
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-703- case $ac_option in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:704: *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-705- *=) ac_optarg= ;;
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-747- -disable-* | --disable-*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:748: ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-749- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-752- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:753: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-754- case $ac_user_opts in
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-773- -enable-* | --enable-*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:774: ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-775- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-778- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:779: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-780- case $ac_user_opts in
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-977- -with-* | --with-*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:978: ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-979- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-982- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:983: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-984- case $ac_user_opts in
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-993- -without-* | --without-*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:994: ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-995- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-998- ac_useropt_orig=$ac_useropt
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:999: ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1000- case $ac_user_opts in
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1031- *=*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1032: ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1033- # Reject names that are not valid shell variable names.
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1052-if test -n "$ac_prev"; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1053: ac_option=--`echo $ac_prev | sed 's/_/-/g'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1054- as_fn_error $? "missing argument to $ac_option"
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1074- */ )
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1075: ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1076- eval $ac_var=\$ac_val;;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1109-ac_ls_di=`ls -di .` &&
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1110:ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1111- as_fn_error $? "working directory cannot be determined"
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1165-case $srcdir in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1166:*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1167-esac
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1208-By default, \`make install' will install all the files in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1209:\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1210:an installation prefix other than \`$ac_default_prefix' using \`--prefix',
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1211-for instance \`--prefix=\$HOME'.
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1274-*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1275: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1276- # A ".." for each directory in $ac_dir_suffix.
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1277: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1278- case $ac_top_builddir_sub in
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1410- *\'*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1411: ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1412- esac
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1493- case $ac_val in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1494: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1495- esac
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1508- case $ac_val in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1509: *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1510- esac
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1628- set,)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1629: { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1630:$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1631- ac_cache_corrupted=: ;;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1639- # differences in whitespace do not lead to failure.
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1640: ac_old_val_w=`echo x $ac_old_val`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1641: ac_new_val_w=`echo x $ac_new_val`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1642- if test "$ac_old_val_w" != "$ac_new_val_w"; then
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1659- case $ac_new_val in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1660: *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1661- *) ac_arg=$ac_var=$ac_new_val ;;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1827- test $ac_status = 0; }; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1828: pkg_cv_OPENSSL_CFLAGS=`$PKG_CONFIG --cflags "openssl >= 1.0" 2>/dev/null`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1829- test "x$?" != "x0" && pkg_failed=yes
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1844- test $ac_status = 0; }; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1845: pkg_cv_OPENSSL_LIBS=`$PKG_CONFIG --libs "openssl >= 1.0" 2>/dev/null`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1846- test "x$?" != "x0" && pkg_failed=yes
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1865- if test $_pkg_short_errors_supported = yes; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1866: OPENSSL_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "openssl >= 1.0" 2>&1`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1867- else
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:1868: OPENSSL_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "openssl >= 1.0" 2>&1`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-1869- fi
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2018-'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2019:DEFS=`sed -n "$ac_script" confdefs.h`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2020-
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2027- ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2028: ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2029- # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2094-if test -z "$BASH_VERSION$ZSH_VERSION" \
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2095: && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2096- as_echo='print -r --'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2097- as_echo_n='print -rn --'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2098:elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2099- as_echo='printf %s\n'
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2101-else
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2102: if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2103- as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2111- expr "X$arg" : "X\\(.*\\)$as_nl";
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2112: arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2113- esac;
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2188-# ----------------------------------------
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2189:# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2190-# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
##############################################
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2260- {
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2261: as_val=`expr "$@" || test $? -eq 1`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2262- }
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2364- case $as_dir in #(
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2365: *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2366- *) as_qdir=$as_dir;;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2486-cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2487:ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2488-ac_cs_version="\\
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2508- --*=?*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2509: ac_option=`expr "X$1" : 'X\([^=]*\)='`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2510: ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2511- ac_shift=:
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2513- --*=)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2514: ac_option=`expr "X$1" : 'X\([^=]*\)='`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2515- ac_optarg=
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2537- case $ac_optarg in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2538: *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2539- '') as_fn_error $? "missing file argument" ;;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2653-fi
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2654:ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2655-if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2670- as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2671:ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2672-ac_delim='%!_!# '
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2676-
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2677: ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2678- if test $ac_delim_n = $ac_delim_num; then
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2838- esac
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2839: case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2840- as_fn_append ac_file_inputs " '$ac_f'"
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2897-*)
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2898: ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2899- # A ".." for each directory in $ac_dir_suffix.
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2900: ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2901- case $ac_top_builddir_sub in
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2949-/@mandir@/p'
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2950:case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2951-*datarootdir*) ac_datarootdir_seen=yes;;
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2966-
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2967:# Neutralize VPATH when `$srcdir' = `.'.
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2968-# Shell code in configure.ac might set extrasub.
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r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2992-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure:2993: { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
r-bioc-rtracklayer-1.50.0/.pc/delete_configure.patch/configure-2994- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \