=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-159-#> $`https://www.wikipathways.org/index.php/Pathway:WP4055`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:160:#> $`https://www.wikipathways.org/index.php/Pathway:WP4055`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-161-#> [1] "0.87241286" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-207-#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$score 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$`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.pubmed$values$`15` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-343-#> [1] "12068308" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-344-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:345:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.pubmed$values$`16` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-346-#> [1] "17227708" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-347-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:348:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.pubmed$values$`17` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-349-#> [1] "18772890" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-357-#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:358:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-359-#> [1] "Frequent and focal FGFR1 amplification associates with therapeutically tractable FGFR1 dependency in squamous cell lung cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-360-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:361:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values$`2` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-362-#> [1] "Blocking of FGFR signaling inhibits breast cancer cell proliferation through downregulation of D-type cyclins." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-363-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:364:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values$`3` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-365-#> [1] "FGFR1/3 tyrosine kinase fusions define a unique molecular subtype of non-small cell lung cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-366-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:367:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values$`4` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-368-#> [1] "Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-369-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:370:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values$`5` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-371-#> [1] "High-throughput tissue microarray analysis of 3p25 (RAF1) and 8p12 (FGFR1) copy number alterations in urinary bladder cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-372-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:373:#> $`https://www.wikipathways.org/index.php/Pathway:WP3335`$fields$literature.title$values$`6` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-374-#> [1] "High-resolution single nucleotide polymorphism array analysis of epithelial ovarian cancer reveals numerous microdeletions and amplifications." 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1417:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`16` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1418-#> [1] "21034966" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1419-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1420:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`17` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1421-#> [1] "21807066" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1422-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1423:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`18` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1424-#> 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1440-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1441:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`24` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1442-#> [1] "21963855" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1443-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1444:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`25` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1445-#> [1] "20004154" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1446-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1447:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`26` 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1456:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`29` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1457-#> [1] "21903324" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1458-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1459:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.pubmed$values$`30` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1460-#> [1] "18796370" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1468-#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1469:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1470-#> [1] "p53-independent roles of MDM2 in NF-kB signaling: implications for cancer therapy, wound healing, and autoimmune diseases." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1471-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1472:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`2` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1473-#> [1] "The role of BRCA1 in homologous recombination repair in response to replication stress: significance in tumorigenesis and cancer therapy." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1474-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1475:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`3` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1476-#> [1] "Seventeen years after BRCA1: what is the BRCA mutation status of the breast cancer patients in Africa? - a systematic review." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1477-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1478:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`4` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1479-#> [1] "ATM: genome stability, neuronal development, and cancer cross paths." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1480-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1481:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`5` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1482-#> [1] "NF-kappaB in lung cancer, a carcinogenesis mediator and a prevention and therapy target." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1483-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1484:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`6` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1485-#> [1] "The p53 network: cellular and systemic DNA damage responses in aging and cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1486-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1487:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`7` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1488-#> [1] "The role of p53 in 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1502:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`12` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1503-#> [1] "[Role of the ATM gene in genetic predisposition to cancer]." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1504-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1505:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`13` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1506-#> [1] "MDM2, MDMX and p53 in oncogenesis and cancer therapy." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1507-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1508:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`14` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1509-#> [1] "Breast cancer genes: beyond BRCA1 and BRCA2." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1510-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1511:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`15` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1512-#> [1] "Targeting the checkpoint kinase Chk1 in cancer therapy." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1513-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1514:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`16` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1515-#> [1] 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1522-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1523:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`19` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1524-#> [1] "P53, cell cycle control and apoptosis: implications for cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1525-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1526:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`20` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1527-#> [1] "Apoptosis, cancer and the p53 tumour suppressor gene." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1528-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1529:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`21` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1530-#> [1] "The CHEK2 gene and inherited breast cancer susceptibility." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1531-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1532:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`22` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1533-#> [1] "The role of BRCA1 and BRCA2 in prostate cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1534-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1535:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`23` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1536-#> [1] "p73 as a pharmaceutical target for cancer therapy." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1537-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1538:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`24` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1539-#> [1] "Checkpoint control and cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1540-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1541:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`25` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1542-#> [1] "HMGNs, DNA repair and cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1543-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1544:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`26` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1545-#> [1] "p53 mutations in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1546-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1547:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`27` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1548-#> [1] "Cyclins and breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1549-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1550:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`28` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1551-#> [1] "P53, apoptosis, and breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1552-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1553:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`29` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1554-#> [1] "Targeting p73 in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1555-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:1556:#> $`https://www.wikipathways.org/index.php/Pathway:WP2516`$fields$literature.title$values$`30` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-1557-#> [1] "Role of CHK2 in cancer development." 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-3140-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:3141:#> $`https://www.wikipathways.org/index.php/Pathway:WP3119`$fields$literature.title$values$`1` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-3142-#> [1] "CDC25 phosphatases in cancer cells: key players? 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5034:#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.pubmed$values$`7` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5035-#> [1] "22589270" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5043-#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.title$values r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5044:#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.title$values$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5045-#> [1] "N-myc downstream-regulated gene 1 promotes tumor inflammatory angiogenesis through JNK activation and autocrine loop of interleukin-1α by human gastric cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5046-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5047:#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.title$values$`2` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5048-#> [1] "3pK, a new mitogen-activated protein kinase-activated protein kinase located in the small cell lung cancer tumor suppressor gene region." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5049-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5050:#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.title$values$`3` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5051-#> [1] "Identification of an autoregulatory feedback pathway involving interleukin-1alpha in induction of constitutive NF-kappaB activation in pancreatic cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5052-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5053:#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.title$values$`4` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5054-#> [1] "An expanding role for RAS GTPase activating proteins (RAS GAPs) in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5055-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5056:#> $`https://www.wikipathways.org/index.php/Pathway:WP3391`$fields$literature.title$values$`5` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5057-#> [1] "EZH2 is downstream of the pRB-E2F pathway, essential for proliferation and amplified in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5058-#> 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5263:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.pubmed$values$`40` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5264-#> [1] "23045283" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5265-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5266:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.pubmed$values$`41` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5267-#> [1] "24854081" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5268-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5269:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.pubmed$values$`42` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5270-#> [1] "19274700" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5271-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5272:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.pubmed$values$`43` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5273-#> [1] "23954741" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5281-#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5282:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5283-#> [1] "Profiling of estrogen up- and down-regulated gene expression in human breast cancer cells: insights into gene networks and pathways underlying estrogenic control of proliferation and cell phenotype." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5284-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5285:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`2` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5286-#> [1] "Global gene expression analysis of estrogen receptor transcription factor cross talk in breast cancer: identification of estrogen-induced/activator protein-1-dependent genes." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5287-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5288:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`3` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5289-#> [1] "The DEAD-box protein p72 regulates ERalpha-/oestrogen-dependent transcription and cell growth, and is associated with improved survival in ERalpha-positive breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5290-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5291:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`4` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5292-#> [1] "Transcriptional regulation of c-myc oncogene expression by estrogen in hormone-responsive human breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5293-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5294:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`5` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5295-#> [1] "An H2A histone isotype regulates estrogen receptor target genes by mediating enhancer-promoter-3'-UTR interactions in breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5296-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5297:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`6` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5298-#> [1] "Stimulation of c-myc oncogene expression associated with estrogen-induced proliferation of human breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5299-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5300:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`7` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5301-#> [1] "Cathepsin D gene is controlled by a mixed promoter, and estrogens stimulate only TATA-dependent transcription in breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5302-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5303:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`8` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5304-#> [1] "Cathepsin D: newly discovered functions of a long-standing aspartic protease in cancer and apoptosis." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5305-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5306:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`9` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5307-#> [1] "A cell-type-specific transcriptional network required for estrogen regulation of cyclin D1 and cell cycle progression in breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5308-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5309:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`10` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5310-#> [1] "Histone demethylase JMJD2B functions as a co-factor of estrogen receptor in breast cancer proliferation and mammary gland development." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5311-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5312:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`11` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5313-#> [1] "HER-2 tyrosine kinase pathway targets estrogen receptor and promotes hormone-independent growth in human breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5314-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5315:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`12` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5316-#> [1] "Long-range activation of GREB1 by estrogen receptor via three distal consensus estrogen-responsive elements in breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5317-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5318:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`13` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5319-#> [1] "RUNX1 prevents oestrogen-mediated AXIN1 suppression and β-catenin activation in ER-positive breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5320-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5321:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`14` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5322-#> [1] "Meta-analysis of human cancer microarrays reveals GATA3 is integral to the estrogen receptor alpha pathway." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5323-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5324:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`15` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5325-#> [1] "Mechanism of and requirement for estrogen-regulated MYB expression in estrogen-receptor-positive breast cancer cells." 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5344-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5345:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`22` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5346-#> [1] "Strong association between c-myb and oestrogen-receptor expression in human breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5347-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5348:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`23` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5349-#> [1] "The ERBB4/HER4 intracellular domain 4ICD is a BH3-only protein promoting apoptosis of breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5350-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5351:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`24` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5352-#> [1] "Serum receptor-binding cancer antigen expressed on SiSo cells (RCAS1) as a diagnostic and prognostic marker for non-small cell lung cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5353-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5354:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`25` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5355-#> [1] "Gene regulation by cohesin in cancer: is the ring an unexpected party to proliferation?" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5356-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5357:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`26` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5358-#> [1] "Estrogen receptor alpha phosphorylation and its functional impact in human breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5359-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5360:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`27` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5361-#> [1] "PDZK1 and GREB1 are estrogen-regulated genes expressed in hormone-responsive breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5362-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5363:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`28` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5364-#> [1] "GREB 1 is a critical regulator of hormone dependent breast cancer growth." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5365-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5366:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`29` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5367-#> [1] "Estrogen receptor-mediated long-range chromatin interactions and transcription in breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5368-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5369:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`30` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5370-#> [1] "The functional role of the novel biomarker karyopherin α 2 (KPNA2) in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5371-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5372:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`31` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5373-#> [1] "Identification and characterization of novel spliced variants of neuregulin 4 in prostate cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5374-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5375:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`32` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5376-#> [1] 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5383-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5384:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`35` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5385-#> [1] "Progesterone receptor modulates ERα action in breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5386-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5387:#> $`https://www.wikipathways.org/index.php/Pathway:WP4432`$fields$literature.title$values$`36` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5388-#> [1] "FOXA1: master of steroid receptor function in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5389-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5390:#> 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5558-#> [1] "26910647" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5559-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5560:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.pubmed$values$`8` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5561-#> [1] "23856247" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5562-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5563:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.pubmed$values$`9` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5564-#> [1] "18199536" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5565-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5566:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.pubmed$values$`10` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5567-#> [1] "17496923" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5568-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5569:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.pubmed$values$`11` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5570-#> [1] "21102609" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5571-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5572:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.pubmed$values$`12` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5573-#> 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5597-#> [1] "22270953" r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5598-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5599:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.pubmed$values$`21` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5600-#> [1] "12068308" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5608-#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5609:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5610-#> [1] "The identification of 2-(1H-indazol-4-yl)-6-(4-methanesulfonyl-piperazin-1-ylmethyl)-4-morpholin-4-yl-thieno[3,2-d]pyrimidine (GDC-0941) as a potent, selective, orally bioavailable inhibitor of class I PI3 kinase for the treatment of cancer ." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5611-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5612:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`2` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5613-#> [1] "Novel phosphoinositide 3-kinase/mTOR dual inhibitor, NVP-BGT226, displays potent growth-inhibitory activity against human head and neck cancer cells in vitro and in vivo." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5614-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5615:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`3` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5616-#> [1] "Cancer-derived mutations in the regulatory subunit p85alpha of phosphoinositide 3-kinase function through the catalytic subunit p110alpha." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5617-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5618:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`4` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5619-#> [1] "NVP-BEZ235, a dual PI3K/mTOR inhibitor, prevents PI3K signaling and inhibits the growth of cancer cells with activating PI3K mutations." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5620-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5621:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`5` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5622-#> [1] "Cytoplasmic relocalization and inhibition of the cyclin-dependent kinase inhibitor p27(Kip1) by PKB/Akt-mediated phosphorylation in breast cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5623-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5624:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`6` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5625-#> [1] "The ERBB4/HER4 intracellular domain 4ICD is a BH3-only protein promoting apoptosis of breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5626-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5627:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`7` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5628-#> [1] "MAF1 suppresses AKT-mTOR signaling and liver cancer through activation of PTEN transcription." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5629-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5630:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`8` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5631-#> [1] "miR-205 targets PTEN and PHLPP2 to augment AKT signaling and drive malignant phenotypes in non-small cell lung cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5632-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5633:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`9` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5634-#> [1] "MicroRNA expression profiling in human ovarian cancer: miR-214 induces cell survival and cisplatin resistance by targeting PTEN." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5635-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5636:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`10` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5637-#> [1] "Targeting the Raf-MEK-ERK mitogen-activated protein kinase cascade for the treatment of cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5638-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5639:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`11` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5640-#> [1] "MET signalling: principles and functions in development, organ regeneration and cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5641-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5642:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`12` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5643-#> [1] "Identification and characterization of novel spliced variants of neuregulin 4 in prostate cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5644-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5645:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`13` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5646-#> [1] "mTOR: from growth signal integration to cancer, diabetes and ageing." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5647-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5648:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`14` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5649-#> [1] "The stem cell factor receptor/c-Kit as a drug target in cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5650-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5651:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`15` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5652-#> [1] "MicroRNA-21 regulates expression of the PTEN tumor suppressor gene in human hepatocellular cancer." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5653-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5654:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`16` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5655-#> [1] "Activation of the PI3K pathway in cancer through inhibition of PTEN by exchange factor P-REX2a." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5656-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:5657:#> $`https://www.wikipathways.org/index.php/Pathway:WP2653`$fields$literature.title$values$`17` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-5658-#> [1] "A transforming mutation in the pleckstrin homology domain of AKT1 in cancer." 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:6423:#> $`https://www.wikipathways.org/index.php/Pathway:WP4105`$fields$literature.title$values$`3` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-6424-#> [1] "MicroRNA-378-mediated suppression of Runx1 alleviates the aggressive phenotype of triple-negative MDA-MB-231 human breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-6425-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:6426:#> $`https://www.wikipathways.org/index.php/Pathway:WP4105`$fields$literature.title$values$`4` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-6427-#> [1] "Runx2 activates PI3K/Akt signaling via mTORC2 regulation in invasive breast cancer cells." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-6428-#> 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-8095-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:8096:#> $`https://www.wikipathways.org/index.php/Pathway:WP1858`$fields$literature.title$values$`8` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-8097-#> [1] "Differential roles of trans-phosphorylated EGFR, HER2, HER3, and RET as heterodimerisation partners of MET in lung cancer with MET amplification." r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-8098-#> r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:8099:#> $`https://www.wikipathways.org/index.php/Pathway:WP1858`$fields$literature.title$values$`9` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-8100-#> [1] "EZH2 is downstream of the pRB-E2F pathway, essential for proliferation and amplified in cancer." 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r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19672:#> $`https://www.wikipathways.org/index.php/Pathway:WP3301`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19673-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19711-#> $`https://www.wikipathways.org/index.php/Pathway:WP2361`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19712:#> $`https://www.wikipathways.org/index.php/Pathway:WP2361`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19713-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19751-#> $`https://www.wikipathways.org/index.php/Pathway:WP3166`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19752:#> $`https://www.wikipathways.org/index.php/Pathway:WP3166`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19753-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19791-#> $`https://www.wikipathways.org/index.php/Pathway:WP3967`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19792:#> $`https://www.wikipathways.org/index.php/Pathway:WP3967`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19793-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19831-#> $`https://www.wikipathways.org/index.php/Pathway:WP3670`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19832:#> $`https://www.wikipathways.org/index.php/Pathway:WP3670`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19833-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19871-#> $`https://www.wikipathways.org/index.php/Pathway:WP2059`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19872:#> $`https://www.wikipathways.org/index.php/Pathway:WP2059`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19873-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19919-#> $`https://www.wikipathways.org/index.php/Pathway:WP4204`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19920:#> $`https://www.wikipathways.org/index.php/Pathway:WP4204`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19921-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19967-#> $`https://www.wikipathways.org/index.php/Pathway:WP4763`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:19968:#> $`https://www.wikipathways.org/index.php/Pathway:WP4763`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-19969-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20015-#> $`https://www.wikipathways.org/index.php/Pathway:WP4746`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20016:#> $`https://www.wikipathways.org/index.php/Pathway:WP4746`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20017-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20063-#> $`https://www.wikipathways.org/index.php/Pathway:WP4674`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20064:#> $`https://www.wikipathways.org/index.php/Pathway:WP4674`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20065-#> [1] "0.17734282" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20103-#> $`https://www.wikipathways.org/index.php/Pathway:WP3363`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20104:#> $`https://www.wikipathways.org/index.php/Pathway:WP3363`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20105-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20152-#> $`https://www.wikipathways.org/index.php/Pathway:WP4301`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20153:#> $`https://www.wikipathways.org/index.php/Pathway:WP4301`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20154-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20192-#> $`https://www.wikipathways.org/index.php/Pathway:WP3803`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20193:#> $`https://www.wikipathways.org/index.php/Pathway:WP3803`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20194-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20240-#> $`https://www.wikipathways.org/index.php/Pathway:WP4445`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20241:#> $`https://www.wikipathways.org/index.php/Pathway:WP4445`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20242-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20288-#> $`https://www.wikipathways.org/index.php/Pathway:WP2799`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20289:#> $`https://www.wikipathways.org/index.php/Pathway:WP2799`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20290-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20336-#> $`https://www.wikipathways.org/index.php/Pathway:WP2792`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20337:#> $`https://www.wikipathways.org/index.php/Pathway:WP2792`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20338-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20384-#> $`https://www.wikipathways.org/index.php/Pathway:WP4564`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20385:#> $`https://www.wikipathways.org/index.php/Pathway:WP4564`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20386-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20424-#> $`https://www.wikipathways.org/index.php/Pathway:WP4561`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20425:#> $`https://www.wikipathways.org/index.php/Pathway:WP4561`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20426-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20464-#> $`https://www.wikipathways.org/index.php/Pathway:WP4565`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20465:#> $`https://www.wikipathways.org/index.php/Pathway:WP4565`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20466-#> [1] "0.15517497" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20504-#> $`https://www.wikipathways.org/index.php/Pathway:WP2733`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20505:#> $`https://www.wikipathways.org/index.php/Pathway:WP2733`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20506-#> [1] "0.13300711" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20552-#> $`https://www.wikipathways.org/index.php/Pathway:WP2753`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20553:#> $`https://www.wikipathways.org/index.php/Pathway:WP2753`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20554-#> [1] "0.13300711" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20600-#> $`https://www.wikipathways.org/index.php/Pathway:WP4448`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20601:#> $`https://www.wikipathways.org/index.php/Pathway:WP4448`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20602-#> [1] "0.13300711" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20648-#> $`https://www.wikipathways.org/index.php/Pathway:WP3327`$score r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html:20649:#> $`https://www.wikipathways.org/index.php/Pathway:WP3327`$score$`0` r-bioc-rwikipathways-1.10.0+dfsg/docs/reference/findPathwaysByLiterature.html-20650-#> [1] "0.13300711" ############################################## r-bioc-rwikipathways-1.10.0+dfsg/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then r-bioc-rwikipathways-1.10.0+dfsg/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX` r-bioc-rwikipathways-1.10.0+dfsg/debian/tests/run-unit-test-8- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM