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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-cran-eaf-1.9-1/R/eaf-package.R-111-#' \describe{
r-cran-eaf-1.9-1/R/eaf-package.R:112:#' \item{`$vanzyl`}{data frame of results on vanzyl network}
r-cran-eaf-1.9-1/R/eaf-package.R:113:#' \item{`$richmond`}{data frame of results on Richmond
r-cran-eaf-1.9-1/R/eaf-package.R-114-#' network. The second column is filled with `NA`}
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-344- } elsif (!(-s $inpfile)
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl:345: or `grep -v -e "#\\|^\$" $inpfile | wc --bytes` =~ /\s+0$/o) {
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-346- die "$progname: warning: $inpfile: empty file.\n";
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-353- my $file_eps;
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl:354: chomp($basefile = `basename $inpfile .dat`);
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl:355: chomp($inpdir = `dirname $inpfile`);
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-356-
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-636- my $command = shift;
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl:637: system ($command);
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-638-
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-656- } else {
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl:657: `$command`;
r-cran-eaf-1.9-1/inst/scripts/eafplot/eafplot.pl-658- }
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-419- if ($flag_eps) {
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:420: `$eps2png -render +antialias -density 300 -background white -flatten $output_file $output_png`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-421- } else {
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-422- my $tmpfile = "/tmp/". basename($output_file);
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:423: `pdfcrop $output_file $tmpfile`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:424: `$pdf2png -render +antialias -density 300 -background white -flatten $tmpfile $output_png`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-425- }
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-427- #my $output_png_eps =~ s/\.png$/_png.eps/;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:428: #`convert $output_png $output_png_eps`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:429: #`rm -f $output_png`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:430: #`gzip --force -v $output_png_eps`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-431-}
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-438-
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:439:# `convert -render +antialias -density 300 $output_eps $output_jpg`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:440:# `convert $output_jpg -compress jpeg eps2:${output_jpg_eps}`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:441:# `rm -f $output_jpg`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:442:# `gzip --force -v $output_jpg_eps`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-443-# }
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-447- print "$progname: compressing: ";
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:448: `gzip --force -v $output_file`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-449-}
##############################################
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-532- print $command ."\n";
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:533: print `$command`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-534- } else {
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl:535: `$command`;
r-cran-eaf-1.9-1/inst/scripts/eafdiff/eafdiff.pl-536- }
##############################################
r-cran-eaf-1.9-1/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
r-cran-eaf-1.9-1/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX`
r-cran-eaf-1.9-1/debian/tests/run-unit-test-8- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM