=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== r-cran-haplo.stats-1.8.6/R/plot.seqhap.q-68- ylim.indx <- match('ylim', names(dots)) r-cran-haplo.stats-1.8.6/R/plot.seqhap.q:69: ylim.user <- if(!is.na(ylim.indx)) eval(dots[ylim.indx]$ylim) else NULL r-cran-haplo.stats-1.8.6/R/plot.seqhap.q-70- ############################################## r-cran-haplo.stats-1.8.6/inst/doc/manualHaploStats.rnwsave-1855-pairs of haplotypes. Hence, the number of possible haplotype r-cran-haplo.stats-1.8.6/inst/doc/manualHaploStats.rnwsave:1856:pairs can be expressed as $2^{x}$, where $x = H-1$, if $H$\ (the number of r-cran-haplo.stats-1.8.6/inst/doc/manualHaploStats.rnwsave-1857-heterozygous loci) is at least 2, otherwise $x = 0$. ############################################## r-cran-haplo.stats-1.8.6/inst/doc/manualHaploStats.rnwsave-1911- r-cran-haplo.stats-1.8.6/inst/doc/manualHaploStats.rnwsave:1912:\noindent where again $x = H-1$\ if H is at least 2, otherwise x = 0. This special r-cran-haplo.stats-1.8.6/inst/doc/manualHaploStats.rnwsave-1913-case can be represented by our more general genotype counting functions as ############################################## r-cran-haplo.stats-1.8.6/debian/tests/run-unit-test-22-if [ "$AUTOPKGTEST_TMP" = "" ] ; then r-cran-haplo.stats-1.8.6/debian/tests/run-unit-test:23: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` r-cran-haplo.stats-1.8.6/debian/tests/run-unit-test-24-fi ############################################## r-cran-haplo.stats-1.8.6/debian/tests/run-unit-test-27-gunzip *.gz r-cran-haplo.stats-1.8.6/debian/tests/run-unit-test:28:for htest in `ls *.R | sed 's/\.R$//'` ; do r-cran-haplo.stats-1.8.6/debian/tests/run-unit-test-29- LC_ALL=C R --no-save < ${htest}.R 2>&1 | tee > ${htest}.Rout