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/ /_/ > | \// __ \| | / /_/ | | || |
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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-cran-luminescence-0.9.8/man/plot_GrowthCurve.Rd-242- x = x,
r-cran-luminescence-0.9.8/man/plot_GrowthCurve.Rd:243: y = eval(temp$Formula),
r-cran-luminescence-0.9.8/man/plot_GrowthCurve.Rd-244- type = "l"
##############################################
r-cran-luminescence-0.9.8/man/calc_gSGC.Rd-56-\strong{\verb{@info}}\cr
r-cran-luminescence-0.9.8/man/calc_gSGC.Rd:57:`$ call`` (\link{call}) the original function call
r-cran-luminescence-0.9.8/man/calc_gSGC.Rd-58-}
##############################################
r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R-66-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R:67:#' `$unique_pairs` \tab `data.frame` \tab the unique position and grain pairs \cr
r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R:68:#' `$selection_id` \tab `numeric` \tab the selection as record ID \cr
r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R:69:#' `$selection_full` \tab `data.frame` \tab implemented models used in the baSAR-model core \cr
r-cran-luminescence-0.9.8/R/verify_SingleGrainData.R-70-#' }
##############################################
r-cran-luminescence-0.9.8/R/CW2pHMi.R-69-#' \tabular{ll}{
r-cran-luminescence-0.9.8/R/CW2pHMi.R:70:#' `$CW2pHMi.x.t` \tab: transformed time values \cr
r-cran-luminescence-0.9.8/R/CW2pHMi.R:71:#' `$CW2pHMi.method` \tab: used method for the production of the new data points
r-cran-luminescence-0.9.8/R/CW2pHMi.R-72-#' }
##############################################
r-cran-luminescence-0.9.8/R/CW2pHMi.R-76-#' \tabular{ll}{
r-cran-luminescence-0.9.8/R/CW2pHMi.R:77:#' `$x` \tab: time\cr
r-cran-luminescence-0.9.8/R/CW2pHMi.R:78:#' `$y.t` \tab: transformed count values\cr
r-cran-luminescence-0.9.8/R/CW2pHMi.R:79:#' `$x.t` \tab: transformed time values \cr
r-cran-luminescence-0.9.8/R/CW2pHMi.R:80:#' `$method` \tab: used method for the production of the new data points
r-cran-luminescence-0.9.8/R/CW2pHMi.R-81-#' }
##############################################
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-289-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:290:#' `$summary` \tab `data.frame` \tab statistical summary, including the central dose \cr
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:291:#' `$mcmc` \tab `mcmc` \tab [coda::mcmc.list] object including raw output \cr
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:292:#' `$models` \tab `character` \tab implemented models used in the baSAR-model core \cr
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:293:#' `$input_object` \tab `data.frame` \tab summarising table (same format as the XLS-file) including, e.g., Lx/Tx values\cr
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:294:#' `$removed_aliquots` \tab `data.frame` \tab table with removed aliquots (e.g., NaN, or Inf Lx/Tx values). If nothing was removed `NULL` is returned
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-295-#' }
##############################################
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-917- if(!is.null(function_arguments.new$aliquot_range)){
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:918: aliquot_range <- eval(function_arguments.new$aliquot_range)
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-919- }
##############################################
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-922- if(!is.null(function_arguments.new$method_control)){
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:923: method_control <- eval(function_arguments.new$method_control)
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-924- }
##############################################
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-927- if(!is.null(function_arguments.new$baSAR_model)){
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:928: baSAR_model <- eval(function_arguments.new$baSAR_model)
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-929- }
##############################################
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-2098- if(!is.null(function_arguments$source_doserate)){
r-cran-luminescence-0.9.8/R/analyse_baSAR.R:2099: source_doserate <- eval(function_arguments$source_doserate)
r-cran-luminescence-0.9.8/R/analyse_baSAR.R-2100-
##############################################
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R-90-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R:91:#' `$data` \tab `data.frame` \tab the estimated equivalent dose \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R:92:#' `$data_table` \tab `data.frame` \tab full dose and signal table \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_Measurement.R-93-#' `test_parameters` \tab `data.frame` \tab results with test paramaters \cr
##############################################
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-168-#' **DATA.OBJECT** \tab **TYPE** \tab **DESCRIPTION** \cr
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:169:#' `..$De` : \tab `data.frame` \tab Table with De values \cr
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:170:#' `..$De.MC` : \tab `numeric` \tab Table with De values from MC runs \cr
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:171:#' `..$Fit` : \tab [nls] or [lm] \tab object from the fitting for `EXP`, `EXP+LIN` and `EXP+EXP`.
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-172-#' In case of a resulting linear fit when using `LIN`, `QDR` or `EXP OR LIN` \cr
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:173:#' `..$Formula` : \tab [expression] \tab Fitting formula as R expression \cr
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:174:#' `..$call` : \tab `call` \tab The original function call\cr
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-175-#' }
##############################################
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-221-#' x = x,
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R:222:#' y = eval(temp$Formula),
r-cran-luminescence-0.9.8/R/plot_GrowthCurve.R-223-#' type = "l"
##############################################
r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R-87-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:88:#' `$data` \tab `matrix` \tab the final fit matrix \cr
r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:89:#' `$start_matrix` \tab `matrix` \tab the start matrix used for the fitting \cr
r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:90:#' `$total_counts` \tab `integer` \tab Photon count sum \cr
r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R:91:#' `$fit` \tab `nls` \tab the fit object returned by [minpack.lm::nls.lm] \cr
r-cran-luminescence-0.9.8/R/fit_OSLLifeTimes.R-92-#' }
##############################################
r-cran-luminescence-0.9.8/R/CW2pPMi.R-70-#' \tabular{rl}{
r-cran-luminescence-0.9.8/R/CW2pPMi.R:71:#' `$CW2pPMi.x.t` \tab: transformed time values \cr
r-cran-luminescence-0.9.8/R/CW2pPMi.R:72:#' `$CW2pPMi.method` \tab: used method for the production of the new data points
r-cran-luminescence-0.9.8/R/CW2pPMi.R-73-#' }
##############################################
r-cran-luminescence-0.9.8/R/CW2pPMi.R-77-#' \tabular{rl}{
r-cran-luminescence-0.9.8/R/CW2pPMi.R:78:#' `$x` \tab: time\cr
r-cran-luminescence-0.9.8/R/CW2pPMi.R:79:#' `$y.t` \tab: transformed count values\cr
r-cran-luminescence-0.9.8/R/CW2pPMi.R:80:#' `$x.t` \tab: transformed time values \cr
r-cran-luminescence-0.9.8/R/CW2pPMi.R:81:#' `$method` \tab: used method for the production of the new data points
r-cran-luminescence-0.9.8/R/CW2pPMi.R-82-#' }
##############################################
r-cran-luminescence-0.9.8/R/fit_LMCurve.R-163-#'
r-cran-luminescence-0.9.8/R/fit_LMCurve.R:164:#' `.. $data` : [data.frame] with fitting results\cr
r-cran-luminescence-0.9.8/R/fit_LMCurve.R:165:#' `.. $fit` : nls ([nls] object)\cr
r-cran-luminescence-0.9.8/R/fit_LMCurve.R:166:#' `.. $component.contribution.matrix` : [list] component distribution matrix
r-cran-luminescence-0.9.8/R/fit_LMCurve.R-167-#'
##############################################
r-cran-luminescence-0.9.8/R/fit_LMCurve.R-170-#'
r-cran-luminescence-0.9.8/R/fit_LMCurve.R:171:#' `.. $call` : [call] the original function call
r-cran-luminescence-0.9.8/R/fit_LMCurve.R-172-#'
##############################################
r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R-50-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R:51:#' `$data` \tab `data.frame` \tab the fading corrected values \cr
r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R:52:#' `$fit` \tab `nls` \tab the object returned by the dose response curve fitting \cr
r-cran-luminescence-0.9.8/R/calc_Lamothe2003.R-53-#' }
##############################################
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-120-#' `fit`:
r-cran-luminescence-0.9.8/R/fit_CWCurve.R:121:#' an `nls` object (`$fit`) for which generic R functions are
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-122-#' provided, e.g. [summary], [confint], [profile]. For more
##############################################
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-129-#' [matrix] containing the values for the component to sum contribution plot
r-cran-luminescence-0.9.8/R/fit_CWCurve.R:130:#' (`$component.contribution.matrix`).
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-131-#'
##############################################
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-144-#' `fit`:
r-cran-luminescence-0.9.8/R/fit_CWCurve.R:145:#' an `nls` object (`$fit`) for which generic R functions
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-146-#' are provided, e.g. [summary], [confint], [profile]. For more
##############################################
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-151-#' `component.contribution.matrix`: [matrix] containing the values
r-cran-luminescence-0.9.8/R/fit_CWCurve.R:152:#' for the component to sum contribution plot (`$component.contribution.matrix`).\cr
r-cran-luminescence-0.9.8/R/fit_CWCurve.R-153-#'
##############################################
r-cran-luminescence-0.9.8/R/plot_FilterCombinations.R-367- if (!is.null(plot_settings$grid)) {
r-cran-luminescence-0.9.8/R/plot_FilterCombinations.R:368: graphics::grid(eval(plot_settings$grid))
r-cran-luminescence-0.9.8/R/plot_FilterCombinations.R-369-
##############################################
r-cran-luminescence-0.9.8/R/calc_SourceDoseRate.R-16-#' original .BIN file (using e.g., `BINfile <- readBIN2R()` and the slot
r-cran-luminescence-0.9.8/R/calc_SourceDoseRate.R:17:#' `BINfile@@METADATA$DATE`)
r-cran-luminescence-0.9.8/R/calc_SourceDoseRate.R-18-#'
##############################################
r-cran-luminescence-0.9.8/R/plot_RLum.Results.R-1097- if(!is.null(plot.settings$grid)){
r-cran-luminescence-0.9.8/R/plot_RLum.Results.R:1098: grid(eval(plot.settings$grid))
r-cran-luminescence-0.9.8/R/plot_RLum.Results.R-1099-
##############################################
r-cran-luminescence-0.9.8/R/scale_GammaDose.R-157-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R:158:#' `$summary` \tab `data.frame` \tab summary of the model results \cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R:159:#' `$data` \tab `data.frame` \tab the original input data \cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R:160:#' `$dose_rates` \tab `list` \tab two `data.frames` for the scaled and infinite matrix dose rates \cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R:161:#' `$tables` \tab `list` \tab several `data.frames` containing intermediate results \cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R:162:#' `$args` \tab `character` \tab arguments of the call \cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R:163:#' `$call` \tab `call` \tab the original function call \cr
r-cran-luminescence-0.9.8/R/scale_GammaDose.R-164-#' }
##############################################
r-cran-luminescence-0.9.8/R/plot_DRTResults.R-47-#' - `"mean"` (mean De value),
r-cran-luminescence-0.9.8/R/plot_DRTResults.R:48:#' - `"weighted$mean"` (error-weighted mean),
r-cran-luminescence-0.9.8/R/plot_DRTResults.R-49-#' - `"median"` (median of the De values),
##############################################
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-76-#'
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R:77:#' `[.. $data : data.frame]`\cr
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-78-#'
##############################################
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-80-#'
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R:81:#' `[.. $fit : nls object]` \cr
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-82-#'
##############################################
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-88-#'
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R:89:#' `[.. $call : call]`\cr
r-cran-luminescence-0.9.8/R/fit_ThermalQuenching.R-90-#'
##############################################
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R-75-#' **DATA.OBJECT** \tab **TYPE** \tab **DESCRIPTION** \cr
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:76:#' `..$data` : \tab `data.frame` \tab Table with De values \cr
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:77:#' `..$LnLxTnTx.table` : \tab `data.frame` \tab with the LnLxTnTx values \cr
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:78:#' `..$rejection.criteria` : \tab [data.frame] \tab rejection criteria \cr
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:79:#' `..$Formula` : \tab [list] \tab Function used for fitting of the dose response curve \cr
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R:80:#' `..$call` : \tab [call] \tab the original function call
r-cran-luminescence-0.9.8/R/analyse_pIRIRSequence.R-81-#' }
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-779-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:780:#' The data contain two elements: (a) `$Sequence.Header` is a
r-cran-luminescence-0.9.8/R/Luminescence-package.R-781-#' [data.frame] with metadata from the measurement,(b)
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-881-#' \describe{
r-cran-luminescence-0.9.8/R/Luminescence-package.R:882:#' `$BT998`: De and De error values for a fine grain quartz
r-cran-luminescence-0.9.8/R/Luminescence-package.R-883-#' sample from a loess section in Rottewitz.
r-cran-luminescence-0.9.8/R/Luminescence-package.R-884-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:885:#' `$CA1`: Single grain De
r-cran-luminescence-0.9.8/R/Luminescence-package.R-886-#' and De error values for a coarse grain quartz sample from a fluvial deposit
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-957-#' \describe{
r-cran-luminescence-0.9.8/R/Luminescence-package.R:958:#' `$fading.data`: A named [list] of [data.frame]s,
r-cran-luminescence-0.9.8/R/Luminescence-package.R-959-#' each having three named columns (`LxTx, LxTx.error, timeSinceIrradiation`).\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:960:#' `..$IR50`: Fading data of the IR50 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:961:#' `..$IR100`: Fading data of the IR100 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:962:#' `..$IR150`: Fading data of the IR150 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:963:#' `..$IR225`: Fading data of the IR225 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R-964-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R-965-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:966:#' `$equivalentDose.data`: A named of [data.frame]s,
r-cran-luminescence-0.9.8/R/Luminescence-package.R-967-#' each having three named columns (`dose, LxTx, LxTx.error`).\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:968:#' `..$IR50`: Equivalent dose measurement data of the IR50 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:969:#' `..$IR100`: Equivalent dose measurement data of the IR100 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:970:#' `..$IR150`: Equivalent dose measurement data of the IR150 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:971:#' `..$IR225`: Equivalent dose measurement data of the IR225 signal.\cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R-972-#' }
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1049-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1050:#' **`$sample_1`**
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1051-#'
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1056-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1057:#' **`$sample_2`**
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1058-#'
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1063-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1064:#' **`$set_1`**
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1065-#'
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1070-#'
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1071:#' **`$set_2`**
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1072-#'
##############################################
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1081-#' **Element** \tab **Content** \cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1082:#' `$sample_1` \tab A [data.frame] with 3 columns (depth, intensity, error) \cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1083:#' `$sample_2` \tab A [data.frame] with 3 columns (depth, intensity, error) \cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1084:#' `$set_1` \tab A [list] of 4 [data.frame]s, each representing a sample with different ages \cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R:1085:#' `$set_2` \tab A [list] of 5 [data.frame]s, each representing a sample with different ages \cr
r-cran-luminescence-0.9.8/R/Luminescence-package.R-1086-#' }
##############################################
r-cran-luminescence-0.9.8/R/methods_RLum.R-552-#' @export
r-cran-luminescence-0.9.8/R/methods_RLum.R:553:`$.RLum.Data.Curve` <- function(x, i) {get_RLum(x, info.object = i)}
r-cran-luminescence-0.9.8/R/methods_RLum.R-554-
##############################################
r-cran-luminescence-0.9.8/R/methods_RLum.R-562-#' @export
r-cran-luminescence-0.9.8/R/methods_RLum.R:563:`$.RLum.Analysis` <- function(x, i) {get_RLum(x, recordType = i)}
r-cran-luminescence-0.9.8/R/methods_RLum.R-564-
##############################################
r-cran-luminescence-0.9.8/R/methods_RLum.R-566-#' @export
r-cran-luminescence-0.9.8/R/methods_RLum.R:567:`$.RLum.Results` <- function(x, i) {get_RLum(x, data.object = i)}
##############################################
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R-118-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:119:#' `$summary` \tab `data.frame` \tab summary of the fitting results \cr
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:120:#' `$data` \tab `data.frame` \tab the original input data \cr
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:121:#' `$fit` \tab `nls` \tab the fitting object produced by [minpack.lm::nlsLM] \cr
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:122:#' `$args` \tab `character` \tab arguments of the call \cr
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R:123:#' `$call` \tab `call` \tab the original function call \cr
r-cran-luminescence-0.9.8/R/fit_SurfaceExposure.R-124-#' }
##############################################
r-cran-luminescence-0.9.8/R/methods_DRAC.R-243-#' @export
r-cran-luminescence-0.9.8/R/methods_DRAC.R:244:`$<-.DRAC.list`<- function(x, name, value) {
r-cran-luminescence-0.9.8/R/methods_DRAC.R-245- # this is straightforward; retrieve the index and pass the object
##############################################
r-cran-luminescence-0.9.8/R/CW2pLMi.R-70-#' \tabular{rl}{
r-cran-luminescence-0.9.8/R/CW2pLMi.R:71:#' `$CW2pLMi.x.t` \tab: transformed time values \cr
r-cran-luminescence-0.9.8/R/CW2pLMi.R:72:#' `$CW2pLMi.method` \tab: used method for the production of the new data points
r-cran-luminescence-0.9.8/R/CW2pLMi.R-73-#' }
##############################################
r-cran-luminescence-0.9.8/R/calc_gSGC.R-40-#' **`@data`**\cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:41:#' `$ De.value` ([data.frame]) \cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:42:#' `.. $ De` \cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:43:#' `.. $ De.error` \cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:44:#' `.. $ Eta` \cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:45:#' `$ De.MC` ([list]) contains the matrices from the error estimation.\cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:46:#' `$ uniroot` ([list]) contains the [uniroot] outputs of the De estimations\cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R-47-#'
r-cran-luminescence-0.9.8/R/calc_gSGC.R-48-#' **`@info`**\cr
r-cran-luminescence-0.9.8/R/calc_gSGC.R:49:#' `$ call`` ([call]) the original function call
r-cran-luminescence-0.9.8/R/calc_gSGC.R-50-#'
##############################################
r-cran-luminescence-0.9.8/R/calc_gSGC.R-306- if(!is.null(plot.settings$grid)){
r-cran-luminescence-0.9.8/R/calc_gSGC.R:307: graphics::grid(eval(plot.settings$grid))
r-cran-luminescence-0.9.8/R/calc_gSGC.R-308-
##############################################
r-cran-luminescence-0.9.8/R/calc_AverageDose.R-59-#'
r-cran-luminescence-0.9.8/R/calc_AverageDose.R:60:#' `[.. $summary : data.frame]`\cr
r-cran-luminescence-0.9.8/R/calc_AverageDose.R-61-#'
##############################################
r-cran-luminescence-0.9.8/R/calc_AverageDose.R-76-#'
r-cran-luminescence-0.9.8/R/calc_AverageDose.R:77:#' `[.. $dstar : matrix]` \cr
r-cran-luminescence-0.9.8/R/calc_AverageDose.R-78-#'
##############################################
r-cran-luminescence-0.9.8/R/calc_AverageDose.R-80-#'
r-cran-luminescence-0.9.8/R/calc_AverageDose.R:81:#' `[.. $hist : list]`\cr
r-cran-luminescence-0.9.8/R/calc_AverageDose.R-82-#'
##############################################
r-cran-luminescence-0.9.8/R/report_RLum.R-416- if (elements$endpoint[i]) {
r-cran-luminescence-0.9.8/R/report_RLum.R:417: table <- tryCatch(eval(parse(text = elements$branch[i])),
r-cran-luminescence-0.9.8/R/report_RLum.R-418- error = function(e) {
##############################################
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-234-#'
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:235:#' `[.. $data : data.frame]`
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-236-#'
##############################################
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-251-#'
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:252:#' `[.. $De.MC : numeric]`
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-253-#'
##############################################
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-255-#'
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:256:#' `[.. $test_parameters : data.frame]`
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-257-#'
##############################################
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-268-#'
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:269:#' `[.. $fit : data.frame]`
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-270-#'
##############################################
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-272-#'
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R:273:#' `[.. $slide : list]`
r-cran-luminescence-0.9.8/R/analyse_IRSAR.RF.R-274-#'
##############################################
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R-45-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:46:#' `$data` \tab `data.frame` \tab summed apparent dose table \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:47:#' `$data_full` \tab `data.frame` \tab full apparent dose table \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:48:#' `$fit` \tab `lm` \tab the linear model obtained from fitting \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R:49:#' `$col.seq` \tab `numeric` \tab the used colour vector \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_CrossTalk.R-50-#' }
##############################################
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-67-#' **Element** \tab **Type** \tab **Description**\cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:68:#' `$data` \tab `data.frame` \tab correction value and error \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:69:#' `$table` \tab `data.frame` \tab table used for plotting \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:70:#' `$table_mean` \tab `data.frame` \tab table used for fitting \cr
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:71:#' `$fit` \tab `lm` or `nls` \tab the fitting as returned by the function [plot_GrowthCurve]
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-72-#' }
##############################################
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-331- x = x,
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:332: y = eval(GC$Formula)
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-333- )
##############################################
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-336- x <- 0
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:337: lines(x = c(-GC$De[1], -GC$De[1]), y = c(eval(GC$Formula), 0), lty = 2, col = "red")
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-338- shape::Arrows(
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-339- x0 = 0,
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:340: y0 = eval(GC$Formula),
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-341- x1 = as.numeric(-GC$De[1]),
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:342: y1 = eval(GC$Formula),
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-343- arr.type = "triangle",
##############################################
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-351- x = -GC$De[1] / 2,
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R:352: y = eval(GC$Formula),
r-cran-luminescence-0.9.8/R/analyse_Al2O3C_ITC.R-353- pos = 3,
##############################################
r-cran-luminescence-0.9.8/R/use_DRAC.R-32-#' \tabular{lll}{
r-cran-luminescence-0.9.8/R/use_DRAC.R:33:#' `$highlights` \tab [data.frame] \tab summary of 25 most important input/output fields \cr
r-cran-luminescence-0.9.8/R/use_DRAC.R:34:#' `$header` \tab [character] \tab HTTP header from the DRAC server response \cr
r-cran-luminescence-0.9.8/R/use_DRAC.R:35:#' `$labels` \tab [data.frame] \tab descriptive headers of all input/output fields \cr
r-cran-luminescence-0.9.8/R/use_DRAC.R:36:#' `$content` \tab [data.frame] \tab complete DRAC input/output table \cr
r-cran-luminescence-0.9.8/R/use_DRAC.R:37:#' `$input` \tab [data.frame] \tab DRAC input table \cr
r-cran-luminescence-0.9.8/R/use_DRAC.R:38:#' `$output` \tab [data.frame] \tab DRAC output table \cr
r-cran-luminescence-0.9.8/R/use_DRAC.R-39-#' `references`\tab [list] \tab A list of [bibentry]s of used references \cr
##############################################
r-cran-luminescence-0.9.8/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
r-cran-luminescence-0.9.8/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX`
r-cran-luminescence-0.9.8/debian/tests/run-unit-test-8- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM