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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-22-* to use the structure of the `optim()` call;
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:23:* to provide for parameter scaling for all methods via `control$parscale`;
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-24-* to return a consistent result structure that as far as possible
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-158-* Provide, if required, appropriate links to modified function and gradient
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:159:routines that allow the parameter scaling `control$parscale` to be applied
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-160-if this funtionality is not present in the methods. To my knowledge, only the
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-322-
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:323:`optim()` uses `control$fnscale` to "scale" the value of the function or gradient computed by
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-324-`fn` or `gr` respectively. In practice, the only use for this scaling is to convert a
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-336-translating or transforming the names and values to achieve the desired result. This is
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:337:sometimes not possible precisely. A method which uses `control$trace = TRUE` (a logical
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-338-element) has only "on" or "off" for controlling output. Other methods use an integer
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-346-Thus, if `print.level` is the desired control, and it more or less matches the `optimr()`
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:347:`control$trace`, we need to set
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-348-
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-352-```
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:353:After the method has run, we may need to reset `control$trace`.
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-354-
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-412-set of triplets consisting of a method name (character), a function evaluation count and an iteration count.
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:413:* the `control$maxit` and `control$maxfeval` are replaced, if present, with values from the `methcontrol`
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-414-argument list.
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-616-many methods put the contols into separate parameters of their function call. For example,
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd:617:the `control$maxit` iteration limit is `iterlim` for the function `nlm()`.
r-cran-optimx-2020-4.2+dfsg/vignettes/Extend-optimx.Rmd-618-
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd-90-
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd:91:where c is some number less than 1. Typically $c = 1e-4 = 0.0001$. Note that the product
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd-92-of gradient times search vector is negative for any reasonable situation, since we are
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd-131-than 1). If the Armijo condition is not met, we replace $step$ with $ r * step $
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd:132:where $r$ is less than 1. Here we suggest `control$stepdec = 0.2`. We repeat until
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd-133-$x_t$ satisfies the Armijo condition or $x_t$ is essentially unchanged by the step.
##############################################
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd-139-
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd:140:where $d$ is the search direction. `control$offset = 100` is used. We could
r-cran-optimx-2020-4.2+dfsg/vignettes/SNewton.Rmd-141-also, and almost equivalently, use the **R** `identical` function.
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-22-* to use the structure of the `optim()` call;
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:23:* to provide for parameter scaling for all methods via `control$parscale`;
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-24-* to return a consistent result structure that as far as possible
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-158-* Provide, if required, appropriate links to modified function and gradient
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:159:routines that allow the parameter scaling `control$parscale` to be applied
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-160-if this funtionality is not present in the methods. To my knowledge, only the
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-322-
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:323:`optim()` uses `control$fnscale` to "scale" the value of the function or gradient computed by
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-324-`fn` or `gr` respectively. In practice, the only use for this scaling is to convert a
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-336-translating or transforming the names and values to achieve the desired result. This is
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:337:sometimes not possible precisely. A method which uses `control$trace = TRUE` (a logical
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-338-element) has only "on" or "off" for controlling output. Other methods use an integer
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-346-Thus, if `print.level` is the desired control, and it more or less matches the `optimr()`
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:347:`control$trace`, we need to set
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-348-
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-352-```
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:353:After the method has run, we may need to reset `control$trace`.
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-354-
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-412-set of triplets consisting of a method name (character), a function evaluation count and an iteration count.
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:413:* the `control$maxit` and `control$maxfeval` are replaced, if present, with values from the `methcontrol`
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-414-argument list.
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-616-many methods put the contols into separate parameters of their function call. For example,
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd:617:the `control$maxit` iteration limit is `iterlim` for the function `nlm()`.
r-cran-optimx-2020-4.2+dfsg/inst/doc/Extend-optimx.Rmd-618-
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd-90-
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd:91:where c is some number less than 1. Typically $c = 1e-4 = 0.0001$. Note that the product
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd-92-of gradient times search vector is negative for any reasonable situation, since we are
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd-131-than 1). If the Armijo condition is not met, we replace $step$ with $ r * step $
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd:132:where $r$ is less than 1. Here we suggest `control$stepdec = 0.2`. We repeat until
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd-133-$x_t$ satisfies the Armijo condition or $x_t$ is essentially unchanged by the step.
##############################################
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd-139-
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd:140:where $d$ is the search direction. `control$offset = 100` is used. We could
r-cran-optimx-2020-4.2+dfsg/inst/doc/SNewton.Rmd-141-also, and almost equivalently, use the **R** `identical` function.
##############################################
r-cran-optimx-2020-4.2+dfsg/debian/tests/run-unit-test-5-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
r-cran-optimx-2020-4.2+dfsg/debian/tests/run-unit-test:6: AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX`
r-cran-optimx-2020-4.2+dfsg/debian/tests/run-unit-test-7- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM