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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
r-cran-rnexml-2.4.5+ds/vignettes/S4.Rmd-36-S3 objects in R are likely familiar with the use of the `$` operator, such as
r-cran-rnexml-2.4.5+ds/vignettes/S4.Rmd:37:`phy$edge`. S4 objects simply use an `@` operator instead (but cannot be subset
r-cran-rnexml-2.4.5+ds/vignettes/S4.Rmd-38-using numeric arguments such as `phy[[1]]` or named arguments such as phy[["edge"]]).  
##############################################
r-cran-rnexml-2.4.5+ds/R/simmap.R-10-#' 
r-cran-rnexml-2.4.5+ds/R/simmap.R:11:#' @param phy a phylo object containing simmap `phy$maps` element,
r-cran-rnexml-2.4.5+ds/R/simmap.R-12-#'  from the phytools package
##############################################
r-cran-rnexml-2.4.5+ds/R/simmap.R-114-#' @param nexml a nexml object
r-cran-rnexml-2.4.5+ds/R/simmap.R:115:#' @return a simmap object (phylo object with a `$maps` element
r-cran-rnexml-2.4.5+ds/R/simmap.R-116-#'  for use in phytools functions).
##############################################
r-cran-rnexml-2.4.5+ds/R/tbl_df.R:1:`$.tbl_df` <- function(x, i) .subset2(x, i)
##############################################
r-cran-rnexml-2.4.5+ds/inst/doc/S4.Rmd-36-S3 objects in R are likely familiar with the use of the `$` operator, such as
r-cran-rnexml-2.4.5+ds/inst/doc/S4.Rmd:37:`phy$edge`. S4 objects simply use an `@` operator instead (but cannot be subset
r-cran-rnexml-2.4.5+ds/inst/doc/S4.Rmd-38-using numeric arguments such as `phy[[1]]` or named arguments such as phy[["edge"]]).  
##############################################
r-cran-rnexml-2.4.5+ds/debian/tests/run-unit-test-3-oname=rnexml
r-cran-rnexml-2.4.5+ds/debian/tests/run-unit-test:4:pkg=r-cran-`echo $oname | tr '[A-Z]' '[a-z]'`
r-cran-rnexml-2.4.5+ds/debian/tests/run-unit-test-5-
r-cran-rnexml-2.4.5+ds/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
r-cran-rnexml-2.4.5+ds/debian/tests/run-unit-test:7:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
r-cran-rnexml-2.4.5+ds/debian/tests/run-unit-test-8-fi