=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== rapmap-0.15.0+dfsg/include/sparsepp/spp_dlalloc.h-1311- rapmap-0.15.0+dfsg/include/sparsepp/spp_dlalloc.h:1312: // assign tree index for size S to variable I. Use x86 asm if possible rapmap-0.15.0+dfsg/include/sparsepp/spp_dlalloc.h-1313-#if defined(__GNUC__) && (defined(__i386__) || defined(__x86_64__)) ############################################## rapmap-0.15.0+dfsg/include/sparsepp/spp_dlalloc.h-1392- rapmap-0.15.0+dfsg/include/sparsepp/spp_dlalloc.h:1393: // index corresponding to given bit. Use x86 asm if possible rapmap-0.15.0+dfsg/include/sparsepp/spp_dlalloc.h-1394-#if defined(__GNUC__) && (defined(__i386__) || defined(__x86_64__)) ############################################## rapmap-0.15.0+dfsg/include/FastxParserThreadUtils.hpp-21-#if defined(__aarch64__) || defined(arm64) rapmap-0.15.0+dfsg/include/FastxParserThreadUtils.hpp:22: asm volatile("yield" ::: "memory"); rapmap-0.15.0+dfsg/include/FastxParserThreadUtils.hpp-23-#elif defined(__PPC64__) || defined(PPC64) || defined(__ppc64__) ############################################## rapmap-0.15.0+dfsg/scripts/RunRapMap.sh-4-DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" rapmap-0.15.0+dfsg/scripts/RunRapMap.sh:5:bam_out=`echo $cmd | sed -n 's/.*--bamOut\s\+\(\S\+\)\s*.*/\1/p'` rapmap-0.15.0+dfsg/scripts/RunRapMap.sh:6:bam_compress_threads=`echo $cmd | sed -n 's/.*--bamThreads\s\+\([[:digit:]]\+\)\s*.*/\1/p'` rapmap-0.15.0+dfsg/scripts/RunRapMap.sh-7- ############################################## rapmap-0.15.0+dfsg/scripts/RunRapMap.sh-14- if command -v samtools >/dev/null; then rapmap-0.15.0+dfsg/scripts/RunRapMap.sh:15: new_cmd=`echo $cmd | sed 's/--bamOut\s\+\(\S\+\)\s*//'` rapmap-0.15.0+dfsg/scripts/RunRapMap.sh-16- execmd="" ############################################## rapmap-0.15.0+dfsg/scripts/bump_version.sh-4- rapmap-0.15.0+dfsg/scripts/bump_version.sh:5:major_v=`${HERE}/../build/src/rapmap -v | cut -d ' ' -f 2 | cut -d '.' -f 1` rapmap-0.15.0+dfsg/scripts/bump_version.sh:6:minor_v=`${HERE}/../build/src/rapmap -v | cut -d ' ' -f 2 | cut -d '.' -f 2` rapmap-0.15.0+dfsg/scripts/bump_version.sh:7:patch_v=`${HERE}/../build/src/rapmap -v | cut -d ' ' -f 2 | cut -d '.' -f 3` rapmap-0.15.0+dfsg/scripts/bump_version.sh-8- ############################################## rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp-26-#if defined(__x86_64__) rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp:27: asm volatile ("cpuid" rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp-28- : "=a" (cpuid[0]), "=b" (cpuid[1]), "=c" (cpuid[2]), "=d" (cpuid[3]) ############################################## rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp-30-#else // on 32bit, ebx can NOT be used as PIC code rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp:31: asm volatile ("xchgl %%ebx, %1; cpuid; xchgl %%ebx, %1" rapmap-0.15.0+dfsg/src/ksw2pp/KSW2Aligner.cpp-32- : "=a" (cpuid[0]), "=r" (cpuid[1]), "=c" (cpuid[2]), "=d" (cpuid[3]) ############################################## rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_dispatch.c-20-#if defined(__x86_64__) rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_dispatch.c:21: asm volatile ("cpuid" rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_dispatch.c-22- : "=a" (cpuid[0]), "=b" (cpuid[1]), "=c" (cpuid[2]), "=d" (cpuid[3]) ############################################## rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_dispatch.c-24-#else // on 32bit, ebx can NOT be used as PIC code rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_dispatch.c:25: asm volatile ("xchgl %%ebx, %1; cpuid; xchgl %%ebx, %1" rapmap-0.15.0+dfsg/src/ksw2pp/ksw2_dispatch.c-26- : "=a" (cpuid[0]), "=r" (cpuid[1]), "=c" (cpuid[2]), "=d" (cpuid[3]) ############################################## rapmap-0.15.0+dfsg/debian/bin/rapmap_pseudoindex-1-#!/bin/sh rapmap-0.15.0+dfsg/debian/bin/rapmap_pseudoindex:2:command=`echo $0 | sed 's/rapmap_/rapmap /'` rapmap-0.15.0+dfsg/debian/bin/rapmap_pseudoindex-3-$command $* ############################################## rapmap-0.15.0+dfsg/debian/bin/rapmap_pseudomap-1-#!/bin/sh rapmap-0.15.0+dfsg/debian/bin/rapmap_pseudomap:2:command=`echo $0 | sed 's/rapmap_/rapmap /'` rapmap-0.15.0+dfsg/debian/bin/rapmap_pseudomap-3-$command $* ############################################## rapmap-0.15.0+dfsg/debian/bin/rapmap_quasiindex-1-#!/bin/sh rapmap-0.15.0+dfsg/debian/bin/rapmap_quasiindex:2:command=`echo $0 | sed 's/rapmap_/rapmap /'` rapmap-0.15.0+dfsg/debian/bin/rapmap_quasiindex-3-$command $* ############################################## rapmap-0.15.0+dfsg/debian/bin/rapmap_quasimap-1-#!/bin/sh rapmap-0.15.0+dfsg/debian/bin/rapmap_quasimap:2:command=`echo $0 | sed 's/rapmap_/rapmap /'` rapmap-0.15.0+dfsg/debian/bin/rapmap_quasimap-3-$command $* ############################################## rapmap-0.15.0+dfsg/debian/patches/portable_pause-9-+#if defined(__aarch64__) || defined(arm64) rapmap-0.15.0+dfsg/debian/patches/portable_pause:10:+ asm volatile("yield" ::: "memory"); rapmap-0.15.0+dfsg/debian/patches/portable_pause-11-+#elif defined(__PPC64__) || defined(PPC64) || defined(__ppc64__) ############################################## rapmap-0.15.0+dfsg/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then rapmap-0.15.0+dfsg/debian/tests/run-unit-test:7: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX` rapmap-0.15.0+dfsg/debian/tests/run-unit-test-8- trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM