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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
repeatmasker-recon-1.08/scripts/recon.pl-31-
repeatmasker-recon-1.08/scripts/recon.pl:32:`$path/imagespread $ARGV[0] $ARGV[1] $ARGV[2]`;
repeatmasker-recon-1.08/scripts/recon.pl-33-
##############################################
repeatmasker-recon-1.08/scripts/recon.pl-43- $spread = "images/spread" . $i;
repeatmasker-recon-1.08/scripts/recon.pl:44: `sort -k 3,3 -k 4n,4n -k 5nr,5nr $spread >> images/images_sorted`;
repeatmasker-recon-1.08/scripts/recon.pl-45- if ($?) {die "sort failed for $spread.\n";}
##############################################
repeatmasker-recon-1.08/scripts/recon.pl-56-
repeatmasker-recon-1.08/scripts/recon.pl:57:`$path/eledef $ARGV[0] $ARGV[1] single`;
repeatmasker-recon-1.08/scripts/recon.pl-58-if ($?) {die "eledef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/scripts/recon.pl-70-
repeatmasker-recon-1.08/scripts/recon.pl:71:`$path/eleredef $ARGV[0]`;
repeatmasker-recon-1.08/scripts/recon.pl-72-if ($?) {die "eleredef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/scripts/recon.pl-86-
repeatmasker-recon-1.08/scripts/recon.pl:87:`$path/edgeredef $ARGV[0]`;
repeatmasker-recon-1.08/scripts/recon.pl-88-if ($?) {die "edgeredef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/scripts/recon.pl-96-
repeatmasker-recon-1.08/scripts/recon.pl:97:`$path/famdef $ARGV[0]`;
repeatmasker-recon-1.08/scripts/recon.pl-98-if ($?) {die "famdef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-31-
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl:32:`$path/imagespread $ARGV[0] $ARGV[1] $ARGV[2]`;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-33-
##############################################
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-43- $spread = "images/spread" . $i;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl:44: `sort -k 3,3 -k 4n,4n -k 5nr,5nr $spread >> images/images_sorted`;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-45- if ($?) {die "sort failed for $spread.\n";}
##############################################
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-56-
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl:57:`$path/eledef $ARGV[0] $ARGV[1] single`;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-58-if ($?) {die "eledef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-70-
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl:71:`$path/eleredef $ARGV[0]`;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-72-if ($?) {die "eleredef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-86-
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl:87:`$path/edgeredef $ARGV[0]`;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-88-if ($?) {die "edgeredef failed. Exit code $?\n";}
##############################################
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-96-
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl:97:`$path/famdef $ARGV[0]`;
repeatmasker-recon-1.08/.pc/0001-udpate-paths.patch/scripts/recon.pl-98-if ($?) {die "famdef failed. Exit code $?\n";}