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         / ___\_` __ \__  \ |  |  \/ __ | | \\_  __\
        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-26-__shunit_oldShellFlags="$-"
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:27:for _shunit_shellFlag in `echo "${__SHUNIT_SHELL_FLAGS}" |sed 's/\(.\)/\1 /g'`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-28-do
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-260-  # see if condition is an integer, i.e. a return value
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:261:  _su_match=`expr "${_su_condition}" : '\([0-9]*\)'`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-262-  if [ -z "${_su_condition}" ]; then
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-323-  # see if condition is an integer, i.e. a return value
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:324:  _su_match=`expr "${_su_condition}" : '\([0-9]*\)'`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-325-  if [ -z "${_su_condition}" ]; then
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-630-    # add 128 to signal and exit
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:631:    exit `expr ${signal} + 128`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-632-  fi
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-704-    _su__date=`date '+%Y%m%d%H%M%S'`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:705:    _su__random=`expr ${_su__date} / $$`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-706-  fi
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-734-{
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:735:  __shunit_testsPassed=`expr ${__shunit_testsPassed} + 1`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:736:  __shunit_testsTotal=`expr ${__shunit_testsTotal} + 1`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-737-}
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-742-
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:743:  __shunit_testsFailed=`expr ${__shunit_testsFailed} + 1`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:744:  __shunit_testsTotal=`expr ${__shunit_testsTotal} + 1`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-745-  echo "${__SHUNIT_ASSERT_MSG_PREFIX}${_su__msg}" >&2
##############################################
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-774-if [ -z "${__shunit_suite}" ]; then
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2:775:  funcs=`grep "^[ \t]*test[A-Za-z0-9_]* *()" $0 |sed 's/[^A-Za-z0-9_]//g'`
sambamba-0.7.1/contrib/shunit2-2.0.3/shunit2-776-  for func in ${funcs}; do
##############################################
sambamba-0.7.1/deb/makepackage.rb-152-  Dir.chdir '..'
sambamba-0.7.1/deb/makepackage.rb:153:  `fakeroot dpkg-deb --build #{$rootdir}`
sambamba-0.7.1/deb/makepackage.rb-154-end
##############################################
sambamba-0.7.1/scripts/dropbox.sh-2-for i in "$@"; do
sambamba-0.7.1/scripts/dropbox.sh:3:  CONTENT_LENGTH=`ls -la "$i" | awk '{ print $5}'`
sambamba-0.7.1/scripts/dropbox.sh-4-  curl --request PUT --header "Content-Length: "${CONTENT_LENGTH}"" --header "Content-Type: multipart/mixed" --data-binary "@"$i"" "https://api-content.dropbox.com/1/files_put/sandbox/$i?access_token="${ACCESS_TOKEN}""
##############################################
sambamba-0.7.1/scripts/bioconda_push.sh-5-python3 bioconda_yaml_gen.py > $UPDATED_RECIPE
sambamba-0.7.1/scripts/bioconda_push.sh:6:VERSION=`grep version $UPDATED_RECIPE | cut -d\' -f2`
sambamba-0.7.1/scripts/bioconda_push.sh-7-
##############################################
sambamba-0.7.1/test/test_suite.sh-34-    $sambamba $opts index $nsortedbam
sambamba-0.7.1/test/test_suite.sh:35:    assertEquals "aabb4fb319497dec1069028dd354eeda" `$sambamba $opts view -f unpack $nsortedbam |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh:36:    assertEquals "68e19d0f1092e1f0429ba07b418d1d9f" `$sambamba $opts view -f unpack $sortedbam |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-37-}
##############################################
sambamba-0.7.1/test/test_suite.sh-46-    # should be same as sorted bam
sambamba-0.7.1/test/test_suite.sh:47:    assertEquals "6e226f6acc8466115600d4de52ca8944" `$sambamba $opts view -f unpack $outfn |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-48-    outfn=$outdir/subsample2.bam
##############################################
sambamba-0.7.1/test/test_suite.sh-50-    assertEquals 0 $?
sambamba-0.7.1/test/test_suite.sh:51:    assertEquals "4092fb75c87cde6efc47ff0a4dc443fb" `$sambamba $opts view -f unpack $outfn |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-52-}
##############################################
sambamba-0.7.1/test/test_suite.sh-58-    $sambamba $opts view -t2 $nsortedbam > $outfn
sambamba-0.7.1/test/test_suite.sh:59:    assertEquals "3270" `wc -l < $outfn`
sambamba-0.7.1/test/test_suite.sh-60-    cat $outfn | cut -f1 | LC_ALL=C sort -c
##############################################
sambamba-0.7.1/test/test_suite.sh-70-    # check sorted with cat output/ex1_header.sorted2.bam.sam |awk '{print $3 " " $4}'|less
sambamba-0.7.1/test/test_suite.sh:71:    assertEquals "d92c51b9e067590d7d5a18a0bdbbe0cc" `$sambamba $opts view -f unpack $outfn |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-72-}
##############################################
sambamba-0.7.1/test/test_suite.sh-78-    $sambamba $opts view -t2 $outfn > $outfn.sam
sambamba-0.7.1/test/test_suite.sh:79:    assertEquals "2d9af987d7aeaf3a38396870a2f30dca" `$sambamba $opts view -f unpack $outfn |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-80-}
##############################################
sambamba-0.7.1/test/test_suite.sh-85-    assertEquals 0 $?
sambamba-0.7.1/test/test_suite.sh:86:    assertEquals "8a0b62e1ac85185c31cf66126c876217" `$sambamba $opts view -f unpack $outfn |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-87-}
##############################################
sambamba-0.7.1/test/test_suite.sh-92-    assertEquals 0 $?
sambamba-0.7.1/test/test_suite.sh:93:    assertEquals "8a0b62e1ac85185c31cf66126c876217" `$sambamba $opts view -f unpack $outfn |$md5sum|cut -c 1-32`
sambamba-0.7.1/test/test_suite.sh-94-}
##############################################
sambamba-0.7.1/test/test_suite.sh-112-testView() {
sambamba-0.7.1/test/test_suite.sh:113:    assertEquals "1806" `$sambamba $opts view -c $sortedbam chr2`
sambamba-0.7.1/test/test_suite.sh:114:    assertEquals "1464" `$sambamba $opts view -c $sortedbam chr1`
sambamba-0.7.1/test/test_suite.sh:115:    assertEquals "0" `$sambamba $opts view -c $sortedbam '*'`
sambamba-0.7.1/test/test_suite.sh-116-}
##############################################
sambamba-0.7.1/test/test_suite.sh-133-    $sambamba $opts sort -m 50M $outdir/empty.bam -o $outdir/empty2.bam 2>/dev/null
sambamba-0.7.1/test/test_suite.sh:134:    assertEquals "0" `$sambamba $opts view -c $outdir/empty2.bam`
sambamba-0.7.1/test/test_suite.sh-135-}
##############################################
sambamba-0.7.1/test/test_suite.sh-139-    $sambamba $opts markdup $outdir/empty.bam $outdir/empty.dedup.bam 2>/dev/null
sambamba-0.7.1/test/test_suite.sh:140:    assertEquals "0" `$sambamba $opts view -c $outdir/empty.dedup.bam`
sambamba-0.7.1/test/test_suite.sh-141-}
##############################################
sambamba-0.7.1/debian/patches/2to3.patch-69-+python3 bioconda_yaml_gen.py > $UPDATED_RECIPE
sambamba-0.7.1/debian/patches/2to3.patch:70: VERSION=`grep version $UPDATED_RECIPE | cut -d\' -f2`
sambamba-0.7.1/debian/patches/2to3.patch-71- 
##############################################
sambamba-0.7.1/.pc/2to3.patch/scripts/bioconda_push.sh-5-python bioconda_yaml_gen.py > $UPDATED_RECIPE
sambamba-0.7.1/.pc/2to3.patch/scripts/bioconda_push.sh:6:VERSION=`grep version $UPDATED_RECIPE | cut -d\' -f2`
sambamba-0.7.1/.pc/2to3.patch/scripts/bioconda_push.sh-7-