=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== seqkit-0.14.0+ds/benchmark/run.pl-119- my ($cmd) = @_; seqkit-0.14.0+ds/benchmark/run.pl:120: system($cmd); seqkit-0.14.0+ds/benchmark/run.pl-121- ############################################## seqkit-0.14.0+ds/benchmark/seqkit_multi_threads/run.pl-119- my ($cmd) = @_; seqkit-0.14.0+ds/benchmark/seqkit_multi_threads/run.pl:120: system($cmd); seqkit-0.14.0+ds/benchmark/seqkit_multi_threads/run.pl-121- ############################################## seqkit-0.14.0+ds/doc/docs/faq.md-257-capture the ID (`^([^ ]+ )`) so we can restore it in "replacement" with seqkit-0.14.0+ds/doc/docs/faq.md:258:capture variable `${1}` (robuster than `$1`). seqkit-0.14.0+ds/doc/docs/faq.md-259-And flag `-I/--key-capt-idx` (default: 1) is set to 2 because the key `(\w+)` ############################################## seqkit-0.14.0+ds/seqkit/cmd/translate.go-122- allowUnknownCodon := getFlagBool(cmd, "allow-unknown-codon") seqkit-0.14.0+ds/seqkit/cmd/translate.go:123: markInitCodonAsM := getFlagBool(cmd, "init-codon-as-M") seqkit-0.14.0+ds/seqkit/cmd/translate.go-124- listTable := getFlagInt(cmd, "list-transl-table") ############################################## seqkit-0.14.0+ds/seqkit/cmd/replace.go-235- `use the \ escape character. Record number is also supported by "{nr}".`+ seqkit-0.14.0+ds/seqkit/cmd/replace.go:236: `use ${1} instead of $1 when {kv} given!`) seqkit-0.14.0+ds/seqkit/cmd/replace.go-237- replaceCmd.Flags().IntP("nr-width", "", 1, `minimum width for {nr} in flag -r/--replacement. e.g., formatting "1" to "001" by --nr-width 3`) ############################################## seqkit-0.14.0+ds/tests/test.sh-608- SIZE=3 seqkit-0.14.0+ds/tests/test.sh:609: for i in `seq 0 $SIZE`; seqkit-0.14.0+ds/tests/test.sh-610- do seqkit-0.14.0+ds/tests/test.sh:611: for j in `seq 0 $SIZE`; seqkit-0.14.0+ds/tests/test.sh-612- do ############################################## seqkit-0.14.0+ds/tests/test.sh-655- SIZE=3 seqkit-0.14.0+ds/tests/test.sh:656: for i in `seq 0 $SIZE`; seqkit-0.14.0+ds/tests/test.sh-657- do seqkit-0.14.0+ds/tests/test.sh:658: for j in `seq 0 $SIZE`; seqkit-0.14.0+ds/tests/test.sh-659- do ############################################## seqkit-0.14.0+ds/debian/createmanpages-4- seqkit-0.14.0+ds/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'` seqkit-0.14.0+ds/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1` ############################################## seqkit-0.14.0+ds/debian/patches/spellings.patch-49- `use the \ escape character. Record number is also supported by "{nr}".`+ seqkit-0.14.0+ds/debian/patches/spellings.patch:50: `use ${1} instead of $1 when {kv} given!`) seqkit-0.14.0+ds/debian/patches/spellings.patch-51-- replaceCmd.Flags().IntP("nr-width", "", 1, `minimum width for {nr} in flag -r/--replacement. e.g., formating "1" to "001" by --nr-width 3`) ############################################## seqkit-0.14.0+ds/debian/tests/run-unit-test-19-echo "Test 1" seqkit-0.14.0+ds/debian/tests/run-unit-test:20:filegrep=`grep -c '^>' $file` seqkit-0.14.0+ds/debian/tests/run-unit-test:21:testfilegrep=`grep -c '^>' $file` seqkit-0.14.0+ds/debian/tests/run-unit-test-22-if [ "$filegrep" != "$testfilegrep" ] ############################################## seqkit-0.14.0+ds/debian/tests/run-unit-test-27- seqkit-0.14.0+ds/debian/tests/run-unit-test:28:cksumfile=`cat $file | md5sum | cut -d" " -f 1` seqkit-0.14.0+ds/debian/tests/run-unit-test-29-cksumtestfile=`cat testfile | md5sum | cut -d' ' -f 1` ############################################## seqkit-0.14.0+ds/.pc/spellings.patch/seqkit/cmd/replace.go-235- `use the \ escape character. Record number is also supported by "{nr}".`+ seqkit-0.14.0+ds/.pc/spellings.patch/seqkit/cmd/replace.go:236: `use ${1} instead of $1 when {kv} given!`) seqkit-0.14.0+ds/.pc/spellings.patch/seqkit/cmd/replace.go-237- replaceCmd.Flags().IntP("nr-width", "", 1, `minimum width for {nr} in flag -r/--replacement. e.g., formating "1" to "001" by --nr-width 3`)