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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
snap-2013-11-29/hmm-assembler.pl-233-###############
snap-2013-11-29/hmm-assembler.pl:234:my $Phaseprefs = `cat $DIR/phaseprefs`;
snap-2013-11-29/hmm-assembler.pl-235-
##############################################
snap-2013-11-29/hmm-assembler.pl-336-	elsif ($name eq 'ORF') {
snap-2013-11-29/hmm-assembler.pl:337:		my $hack = `cat $DIR/Exon-explicit.duration`;
snap-2013-11-29/hmm-assembler.pl-338-		$hack =~ s/Exon/ORF/;
##############################################
snap-2013-11-29/hmm-assembler.pl-363-		my $file = "$name-$State{$name}{dur}.duration";
snap-2013-11-29/hmm-assembler.pl:364:		system("cat $DIR/$file");
snap-2013-11-29/hmm-assembler.pl-365-	}
##############################################
snap-2013-11-29/hmm-assembler.pl-440-	} else {
snap-2013-11-29/hmm-assembler.pl:441:		system("cat $file");
snap-2013-11-29/hmm-assembler.pl-442-	}
##############################################
snap-2013-11-29/patch-hmm.pl-9-foreach my $file (@file) {
snap-2013-11-29/patch-hmm.pl:10:	my $contents = `cat $file`;
snap-2013-11-29/patch-hmm.pl-11-	my ($type) = $contents =~ /^(\S+)/;
##############################################
snap-2013-11-29/debian/tests/run-unit-test-4-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
snap-2013-11-29/debian/tests/run-unit-test:5:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
snap-2013-11-29/debian/tests/run-unit-test-6-  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM