=========================================================== .___ __ __ _________________ __ __ __| _/|__|/ |_ / ___\_` __ \__ \ | | \/ __ | | \\_ __\ / /_/ > | \// __ \| | / /_/ | | || | \___ /|__| (____ /____/\____ | |__||__| /_____/ \/ \/ grep rough audit - static analysis tool v2.8 written by @Wireghoul =================================[justanotherhacker.com]=== subread-2.0.1+dfsg/test/test_all.sh-24- sleep 1 subread-2.0.1+dfsg/test/test_all.sh:25: sec0=` echo 8-$secs | bc ` subread-2.0.1+dfsg/test/test_all.sh-26- echo |awk -v secs=$sec0 '{printf("%c[13;26H%s",27,secs)}' ############################################## subread-2.0.1+dfsg/test/featureCounts/data/compare.sh-22- cat $ORA_FILE $TMPF.FC |grep -v ^# |grep -iv Geneid | awk 'BEGIN{is_faild = 0; nl2=0; nl3=0} NF==2{ora[$1]=$2; is_faild++; nl2++} NF>3{if(ora[$1]==$7){is_faild -- } nl3++} END{if(is_faild || nl2!=nl3)printf("%c[31mFAILED%c[0m", 27,27);else printf("%c[32mPASS%c[0m", 27,27)}' subread-2.0.1+dfsg/test/featureCounts/data/compare.sh:23: lines_res=`cat $ORA_FILE.jcounts $TMPF.FC.jcounts |grep -v ^# |grep -v PrimaryGene|sort |uniq -c|awk '$1!=2' |wc -l` subread-2.0.1+dfsg/test/featureCounts/data/compare.sh-24- if [[ $lines_res -gt 0 ]] ############################################## subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex-587-Short indels detected from the read data will be saved to a text file (`.indel'). subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex:588:If `$--$sv' is specified when running \code{subread-align}, breakpoints detected from structural variant events will be output to a text file for each library as well (`.breakpoints.txt'). subread-2.0.1+dfsg/doc/SubreadUsersGuide.tex-589-Screen output includes a brief mapping summary, including percentage of uniquely mapped reads, percentage of multi-mapping reads and percentage of unmapped reads. ############################################## subread-2.0.1+dfsg/src/HelperFunctions.c-877- sdl = (struct sockaddr_dl *)(ifm + 1); subread-2.0.1+dfsg/src/HelperFunctions.c:878: ptr = (unsigned char *)LLADDR(sdl); subread-2.0.1+dfsg/src/HelperFunctions.c-879- ############################################## subread-2.0.1+dfsg/.pc/fix_ftbfs_kfreebsd.patch/src/HelperFunctions.c-874- sdl = (struct sockaddr_dl *)(ifm + 1); subread-2.0.1+dfsg/.pc/fix_ftbfs_kfreebsd.patch/src/HelperFunctions.c:875: ptr = (unsigned char *)LLADDR(sdl); subread-2.0.1+dfsg/.pc/fix_ftbfs_kfreebsd.patch/src/HelperFunctions.c-876-