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        / /_/  >  | \// __ \|  |  / /_/ | |  ||  |  
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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
trim-galore-0.6.6/Changelog.md-48-
trim-galore-0.6.6/Changelog.md:49:- Fixed setting `-j $cores` for Cutadapt versions 2.X or above.
trim-galore-0.6.6/Changelog.md-50-
##############################################
trim-galore-0.6.6/trim_galore-1473-            if ($fastqc_args){
trim-galore-0.6.6/trim_galore:1474:                system ("$path_to_fastqc $fastqc_args $output_dir$output_filename");
trim-galore-0.6.6/trim_galore-1475-            }
trim-galore-0.6.6/trim_galore-1476-            else{
trim-galore-0.6.6/trim_galore:1477:                system ("$path_to_fastqc $output_dir$output_filename");
trim-galore-0.6.6/trim_galore-1478-            }
##############################################
trim-galore-0.6.6/trim_galore-1524-        if ($fastqc_args){
trim-galore-0.6.6/trim_galore:1525:            system ("$path_to_fastqc $fastqc_args $output_dir$val_1");
trim-galore-0.6.6/trim_galore-1526-        }
trim-galore-0.6.6/trim_galore-1527-        else{
trim-galore-0.6.6/trim_galore:1528:            system ("$path_to_fastqc $output_dir$val_1");
trim-galore-0.6.6/trim_galore-1529-        }
##############################################
trim-galore-0.6.6/trim_galore-1534-        if ($fastqc_args){
trim-galore-0.6.6/trim_galore:1535:        system ("$path_to_fastqc $fastqc_args $output_dir$val_2");
trim-galore-0.6.6/trim_galore-1536-        }
trim-galore-0.6.6/trim_galore-1537-        else{
trim-galore-0.6.6/trim_galore:1538:        system ("$path_to_fastqc $output_dir$val_2");
trim-galore-0.6.6/trim_galore-1539-        }
##############################################
trim-galore-0.6.6/trim_galore-2491-		warn "Cutadapt seems to be working fine (tested command '$path_to_cutadapt --version')\n";
trim-galore-0.6.6/trim_galore:2492:		$cutadapt_version = `$path_to_cutadapt --version 2>&1`;
trim-galore-0.6.6/trim_galore-2493-		chomp $cutadapt_version;	
##############################################
trim-galore-0.6.6/trim_galore-2507-		# warn "Let's also find out the Python version used. $path_to_cutadapt\n";
trim-galore-0.6.6/trim_galore:2508:		my $location_of_cutadapt = `which $path_to_cutadapt`;
trim-galore-0.6.6/trim_galore-2509-		#warn "Location is: $location_of_cutadapt\n";
##############################################
trim-galore-0.6.6/trim_galore-2525-	
trim-galore-0.6.6/trim_galore:2526:			my $python_return = `$shebang --version 2>&1`;
trim-galore-0.6.6/trim_galore-2527-			chomp $python_return;
##############################################
trim-galore-0.6.6/debian/createmanpages-4-
trim-galore-0.6.6/debian/createmanpages:5:VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'`
trim-galore-0.6.6/debian/createmanpages-6-NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1`
##############################################
trim-galore-0.6.6/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
trim-galore-0.6.6/debian/tests/run-unit-test:7:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trim-galore-0.6.6/debian/tests/run-unit-test-8-  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM