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_________________ __ __ __| _/|__|/ |_
/ ___\_` __ \__ \ | | \/ __ | | \\_ __\
/ /_/ > | \// __ \| | / /_/ | | || |
\___ /|__| (____ /____/\____ | |__||__|
/_____/ \/ \/
grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
trinityrnaseq-2.11.0+dfsg/util/retrieve_sequences_from_fasta.pl-19-
trinityrnaseq-2.11.0+dfsg/util/retrieve_sequences_from_fasta.pl:20: my @accs = `cat $acc_list_file`;
trinityrnaseq-2.11.0+dfsg/util/retrieve_sequences_from_fasta.pl-21- chomp @accs;
##############################################
trinityrnaseq-2.11.0+dfsg/util/retrieve_sequences_from_fasta.pl-39-
trinityrnaseq-2.11.0+dfsg/util/retrieve_sequences_from_fasta.pl:40: my $result = `$cmd`;
trinityrnaseq-2.11.0+dfsg/util/retrieve_sequences_from_fasta.pl-41- if ($result) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl-75-
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl:76:my $node=`qstat -f $jobid|grep exec_host`;
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl-77-$node =~/exec_host\s+=\s+(\w+)/;
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl-92-if ($method eq 'top'){
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl:93: system("ssh $node -t top");
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl-94-}else{
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl-96- $exec.= " $node $cmd $spool_dir/$jobid.$pbs_server.ER" if $show_error;
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl:97: system($exec);
trinityrnaseq-2.11.0+dfsg/util/PBS/pbs_check.pl-98-}
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-36-
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:37: NUMCMDS=\`ls -l \$FILENAME.??? | wc -l\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:38: NUMCMDSBFLY=\`ls -l \$FILENAMEBFLY.??? | wc -l\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-39- let NUMCMDS=\$NUMCMDS-1
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-44- for ((JOBID=0;JOBID<=\$NUMCMDS;++JOBID));do
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:45: JOB_INDEX_PADDED=\`printf "%03d" \$JOBID\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-46- MYJOBQ=\""\$FILENAME".\$JOB_INDEX_PADDED\"
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-55- if [ \"\$JOB_FILESIZE_Q\" -gt \"\$JOB_COMPLETED_FILESIZE_Q\" ] ; then
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:56: PBS_JOB4=\`qsub -v JOB_INDEX_PADDED=\$JOB_INDEX_PADDED \"\$JOB_CHRYSALIS.sh\" \`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-57- if [[ ! \$PBS_JOB4 ]]; then
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-63- echo \$PBS_JOB4 >> jobnumbers.out ;
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:64: PBS_JOB5=\`qsub -v JOB_INDEX_PADDED=\$JOB_INDEX_PADDED -W depend=afterok:$PBS_JOB4 \"\$JOB_BUTTERFLY.sh\" \`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-65- if [[ ! \$PBS_JOB5 ]]; then
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-82- if [ \"\$JOB_FILESIZE_B\" -gt \"\$JOB_COMPLETED_FILESIZE_B\" ] ; then
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:83: PBS_JOB5=\`qsub -v JOB_INDEX_PADDED=\$JOB_INDEX_PADDED \"\$JOB_BUTTERFLY.sh\" \`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-84- if [[ ! \$PBS_JOB5 ]]; then
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-97- else
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:98: PBS_JOB5=\`qsub -v JOB_INDEX_PADDED=\$JOB_INDEX_PADDED \"\$JOB_BUTTERFLY.sh\" \`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-99- if [[ ! \$PBS_JOB5 ]]; then
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-113- else
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:114: PBS_JOB4=\`qsub -v JOB_INDEX_PADDED=\$JOB_INDEX_PADDED \"\$JOB_CHRYSALIS.sh\" \`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-115- if [[ ! \$PBS_JOB4 ]]; then
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-121- echo \$PBS_JOB4 >> jobnumbers.out ;
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a:122: PBS_JOB5=\`qsub -v JOB_INDEX_PADDED=\$JOB_INDEX_PADDED -W depend=afterok:\$PBS_JOB4 \"\$JOB_BUTTERFLY.sh\" \`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.p4a-123- if [[ ! \$PBS_JOB5 ]]; then
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/N50stats.pl-84- my $seq_ref;
trinityrnaseq-2.11.0+dfsg/util/PBS/N50stats.pl:85: my @head=`head $infile`;
trinityrnaseq-2.11.0+dfsg/util/PBS/N50stats.pl-86- foreach (@head){
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/N50stats.pl-144- print "Done, see $outfile\n";
trinityrnaseq-2.11.0+dfsg/util/PBS/N50stats.pl:145: system("cat $outfile");
trinityrnaseq-2.11.0+dfsg/util/PBS/N50stats.pl-146- }else {
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.sh-84-##################################################################################################################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.sh:85:TRINITYPBSPATH=`dirname "$0"`; # set to location of this script
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.sh-86-
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-27-if [ ! -e \""$OUTPUTDIR"/inchworm.K25.L25"$DS"fa.finished\" ] ;then # do the whole analysis
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:28: PBS_JOB1=\`qsub "$JOBNAME1".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:29: PBS_JOB2=\`qsub -W depend=afterok:\$PBS_JOB1 "$JOBNAME2".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:30: PBS_JOB3=\`qsub -W depend=afternotok:\$PBS_JOB2 "$JOBNAME3".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:31: PBS_JOB4_2=\`qsub -W depend=afterok:\$PBS_JOB2,afterany:\$PBS_JOB3 "$JOBNAME4".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-32- echo "$JOBNAME1".sh submitted ; echo \"\$PBS_JOB1\" > jobnumbers.out ;
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-37- if [ ! -e \""$OUTPUTDIR"/chrysalis/GraphFromIwormFasta.finished\" ] ; then # start analysis after inchworm
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:38: PBS_JOB2=\`qsub "$JOBNAME2".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:39: PBS_JOB3=\`qsub -W depend=afternotok:\$PBS_JOB2 "$JOBNAME3".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:40: PBS_JOB4_2=\`qsub -W depend=afterok:\$PBS_JOB2,afterany:\$PBS_JOB3 "$JOBNAME4".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-41- echo "$JOBNAME2".sh submitted ; echo \"\$PBS_JOB2\" > jobnumbers.out ;
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-45- if [ ! -e \""$OUTPUTDIR"/chrysalis/readsToComponents.finished\" ] ;then # start analysis at Chrisyalis ReadsToTranscripts - which is slow due to I/O
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:46: PBS_JOB3=\`qsub "$JOBNAME3".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:47: PBS_JOB4=\`qsub -W depend=afterok:\$PBS_JOB3 "$JOBNAME4".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-48- echo "$JOBNAME3".sh submitted ; echo \"\$PBS_JOB3\" > jobnumbers.out ;
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-50- else # Run Chrysalis QuantifyGraph and then Butterfly
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont:51: PBS_JOB4=\`qsub "$JOBNAME4".sh\`
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_pbs.cont-52- echo "$JOBNAME4".sh submitted ; echo \"\$PBS_JOB4\" > jobnumbers.out ;
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-6-my $me = $ENV{'USER'};
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl:7:my @jobs_running_ln = `qstat -u $ENV{'USER'}`;
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-8-if (!@jobs_running_ln || scalar(@jobs_running_ln)<1){
##############################################
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-22- if (-s $dir."/jobnumbers.out"){
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl:23: my @job_sub = `tac $dir/jobnumbers.out`;
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-24- chomp(@job_sub);
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-25- foreach my $job (@job_sub){
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl:26: system("qdel -W force $job") if $jobs_running{$job};
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-27- # twice to make sure
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl:28: system("qdel -W force $job >/dev/null 2>/dev/null") if $jobs_running{$job};
trinityrnaseq-2.11.0+dfsg/util/PBS/trinity_kill.pl-29- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/merge_RSEM_output_to_matrix.pl-75- unless (-f $rsem_files_list_file) { die "$usage\nError: cannot open file $rsem_files_list_file"; }
trinityrnaseq-2.11.0+dfsg/util/misc/merge_RSEM_output_to_matrix.pl:76: my @rsem_files = `cat $rsem_files_list_file`;
trinityrnaseq-2.11.0+dfsg/util/misc/merge_RSEM_output_to_matrix.pl-77- chomp @rsem_files;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-138- $pattern='/^\s*(\S+)\s+/';
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl:139: my @test_lines=`head $idfile`;
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-140- foreach my $test (@test_lines){if ($test=~/^>/){$pattern="Bio::SeqIO";}}
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-269- unless ($use_hash) {
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl:270: my $total_queries = `grep -c Query= $blastfile`;
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-271- chomp($total_queries);
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-278- my $result;
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl:279: my @lines = `tail -n 20 $blastfile`;
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-280- foreach my $ln (@lines){
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-557- elsif (-s "$blastfile.hash") {
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl:558: $line_num = `wc $blastfile.hash`;
trinityrnaseq-2.11.0+dfsg/util/misc/alexie_analyze_blast.pl-559- chomp($line_num);
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/tblastn_wrapper.pl-31-
trinityrnaseq-2.11.0+dfsg/util/misc/tblastn_wrapper.pl:32: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/tblastn_wrapper.pl-33- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_bwasw_trinity.pl-45- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/run_bwasw_trinity.pl:46: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_bwasw_trinity.pl-47-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.sh-10-
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.sh:11:CMD="`dirname $0`/run_Trinity_eval.pl $*"
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.sh-12-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-17-
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/info_files_to_eval_cmds.pl:18: my @files = `cat $files_listing_file`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-19- chomp @files;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-29-
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/info_files_to_eval_cmds.pl:30: my $line = `cat $file`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-31- chomp $line;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/partition_target_transcripts.pl-120- if ($restrict_to_genes_file) {
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/partition_target_transcripts.pl:121: my @gene_ids = `cat $restrict_to_genes_file`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/partition_target_transcripts.pl-122- chomp @gene_ids;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/partition_target_transcripts.pl-262- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/partition_target_transcripts.pl:263: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/partition_target_transcripts.pl-264- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-224-
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl:225: my $num_entries = `grep '>' $ref_trans_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-226- $num_entries =~ /(\d+)/ or die "Error, cannot parse number of entries from $ref_trans_fa";
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-331- $cmd = "grep '>' trinity_out_dir.Trinity.fasta | wc -l";
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl:332: my $result = `$cmd`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-333- $result =~ s/^\s+//g;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-341- &process_cmd("echo $cmd > FL.cmd");
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl:342: my @results = `$cmd`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-343- print @results;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-383- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl:384: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-385- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-424-
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl:425: my $pruned_ref_edges = `/usr/lib/trinityrnaseq/util/misc/sim_test_framework/util/find_pruned_edges_shouldve_kept.pl $ref_kmers_file $log_file`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_Trinity_eval.pl-426-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_simulate_reads.wgsim.pl-139- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_simulate_reads.wgsim.pl:140: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/run_simulate_reads.wgsim.pl-141- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/write_simulate_read_commands.pl-14-
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/write_simulate_read_commands.pl:15: my @ref_files = `cat $target_trans_files_file`;
trinityrnaseq-2.11.0+dfsg/util/misc/sim_test_framework/write_simulate_read_commands.pl-16- chomp @ref_files;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/combined_nameSorted_to_dup_pairs_removed.pl-114- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/combined_nameSorted_to_dup_pairs_removed.pl:115: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/combined_nameSorted_to_dup_pairs_removed.pl-116-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/testUnlimitStacksize.pl-40-
trinityrnaseq-2.11.0+dfsg/util/misc/testUnlimitStacksize.pl:41: eval($unset_stacksize_code);
trinityrnaseq-2.11.0+dfsg/util/misc/testUnlimitStacksize.pl-42-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/seqinfo_refseq_to_dot.pl-92-
trinityrnaseq-2.11.0+dfsg/util/misc/seqinfo_refseq_to_dot.pl:93: exit(system("dot -Tpdf $dot_file > $dot_file.pdf"));
trinityrnaseq-2.11.0+dfsg/util/misc/seqinfo_refseq_to_dot.pl-94-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/sim_reads.pl-34- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/sim_reads.pl:35: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/sim_reads.pl-36- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/run_trinity_WITH_LR.pl-40- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/run_trinity_WITH_LR.pl:41: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/run_trinity_WITH_LR.pl-42- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/gmap_to_ref.pl-36- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/gmap_to_ref.pl:37: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/gmap_to_ref.pl-38- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/run_trinity_no_LR.pl-31- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/run_trinity_no_LR.pl:32: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/iso_reco_analysis/run_trinity_no_LR.pl-33- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blastn_wrapper.pl-31-
trinityrnaseq-2.11.0+dfsg/util/misc/blastn_wrapper.pl:32: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/blastn_wrapper.pl-33- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/Monarch_util/generate_gene_alt_splicing_graphs.pl-90-
trinityrnaseq-2.11.0+dfsg/util/misc/Monarch_util/generate_gene_alt_splicing_graphs.pl:91: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/Monarch_util/generate_gene_alt_splicing_graphs.pl-92- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/Monarch_util/generate_trans_graphs.pl-62-
trinityrnaseq-2.11.0+dfsg/util/misc/Monarch_util/generate_trans_graphs.pl:63: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/Monarch_util/generate_trans_graphs.pl-64- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/run_BLAT_shortReads.pl-29-
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/run_BLAT_shortReads.pl:30: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/run_BLAT_shortReads.pl-31- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-85-
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl:86:my $num_seqs = `grep '>' $transcript_db | wc -l `;
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-87-$num_seqs =~ s/\s//g;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-147- my $checkpoint = $thread_info_href->{checkpoint};
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl:148: system("touch $checkpoint");
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-149- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-196- my $checkpoint = $thread_info_href->{checkpoint};
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl:197: system("touch $checkpoint");
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-198- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-270-
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl:271: system("touch $checkpoint_file");
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/process_BLAT_alignments.pl-272-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/blat_to_sam.pl-62- foreach my $prog (@required_progs) {
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/blat_to_sam.pl:63: my $path = `which $prog`;
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/blat_to_sam.pl-64- unless ($path =~ /^\//) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/blat_to_sam.pl-112- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/blat_to_sam.pl:113: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/blat_util/blat_to_sam.pl-114-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_DETONATE.pl-80-
trinityrnaseq-2.11.0+dfsg/util/misc/run_DETONATE.pl:81: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_DETONATE.pl-82-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/alt_GG_read_partitioning_JCornish/genwig.sh-67-sam2wig {1} {2} $inbam $nosingle $minins $maxins $nproc \
trinityrnaseq-2.11.0+dfsg/util/misc/alt_GG_read_partitioning_JCornish/genwig.sh:68:::: `cut -f2 $chrinfo` ::: `cut -f1 $chrinfo`
trinityrnaseq-2.11.0+dfsg/util/misc/alt_GG_read_partitioning_JCornish/genwig.sh-69-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/SRA_to_fastq.pl-76- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/SRA_to_fastq.pl:77: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/SRA_to_fastq.pl-78-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/acc_list_to_fasta_entries.pl-179-
trinityrnaseq-2.11.0+dfsg/util/misc/acc_list_to_fasta_entries.pl:180: my $acc_text = `cat $acc_list`;
trinityrnaseq-2.11.0+dfsg/util/misc/acc_list_to_fasta_entries.pl-181-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/compare_bflies.pl-85- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/compare_bflies.pl:86: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/compare_bflies.pl-87-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl-117-
trinityrnaseq-2.11.0+dfsg/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl:118: `touch $checkpoint`;
trinityrnaseq-2.11.0+dfsg/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl-119- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/fastQ_rand_subset.pl-86- if ($fastq_file =~ /\.gz$/) {
trinityrnaseq-2.11.0+dfsg/util/misc/fastQ_rand_subset.pl:87: $linecount = `gunzip -c $fastq_file | wc -l`;
trinityrnaseq-2.11.0+dfsg/util/misc/fastQ_rand_subset.pl-88- }
trinityrnaseq-2.11.0+dfsg/util/misc/fastQ_rand_subset.pl-89- else {
trinityrnaseq-2.11.0+dfsg/util/misc/fastQ_rand_subset.pl:90: $linecount = `cat $fastq_file | wc -l`;
trinityrnaseq-2.11.0+dfsg/util/misc/fastQ_rand_subset.pl-91- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/illustrate_ref_comparison.pl-179- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/illustrate_ref_comparison.pl:180: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/illustrate_ref_comparison.pl-181-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/map_gtf_transcripts_to_genome_annots.pl-535-
trinityrnaseq-2.11.0+dfsg/util/misc/map_gtf_transcripts_to_genome_annots.pl:536: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/map_gtf_transcripts_to_genome_annots.pl-537- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_HISAT.pl-210-
trinityrnaseq-2.11.0+dfsg/util/misc/run_HISAT.pl:211: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_HISAT.pl-212- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR.pl-82-
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR.pl:83:my $star_prog = `which $star_path`;
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR.pl-84-chomp $star_prog;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR.pl-198-
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR.pl:199: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR.pl-200- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR_via_samples_file.pl-81-
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR_via_samples_file.pl:82: my $num_contigs = `grep '>' $genome | wc -l`;
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR_via_samples_file.pl-83- chomp $num_contigs;
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR_via_samples_file.pl-179-
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR_via_samples_file.pl:180: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_STAR_via_samples_file.pl-181- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_read_simulator_per_fasta_entry.pl-64-
trinityrnaseq-2.11.0+dfsg/util/misc/run_read_simulator_per_fasta_entry.pl:65: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_read_simulator_per_fasta_entry.pl-66- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_illuminaPE_from_transcripts.pl-263-
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_illuminaPE_from_transcripts.pl:264: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_illuminaPE_from_transcripts.pl-265-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_illuminaPE_from_transcripts.wgsim.pl-166-
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_illuminaPE_from_transcripts.wgsim.pl:167: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_illuminaPE_from_transcripts.wgsim.pl-168-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/sort_fastq.pl-54- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/sort_fastq.pl:55: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/sort_fastq.pl-56-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/transcript_coverage_UTR_trimmer.pl-154-
trinityrnaseq-2.11.0+dfsg/util/misc/transcript_coverage_UTR_trimmer.pl:155: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/transcript_coverage_UTR_trimmer.pl-156-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/align_reads_launch_igv.pl-41-
trinityrnaseq-2.11.0+dfsg/util/misc/align_reads_launch_igv.pl:42: system("igv.sh -g $target_fa $alignments_file");
trinityrnaseq-2.11.0+dfsg/util/misc/align_reads_launch_igv.pl-43-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/filter_similar_seqs_expr_and_strand_aware.pl-170- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/filter_similar_seqs_expr_and_strand_aware.pl:171: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/filter_similar_seqs_expr_and_strand_aware.pl-172- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/TophatCufflinksWrapper.pl-188-
trinityrnaseq-2.11.0+dfsg/util/misc/TophatCufflinksWrapper.pl:189: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/TophatCufflinksWrapper.pl-190- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/genome_gff3_to_gene_gff3_partitions.pl-105-
trinityrnaseq-2.11.0+dfsg/util/misc/genome_gff3_to_gene_gff3_partitions.pl:106: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/genome_gff3_to_gene_gff3_partitions.pl-107- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/plot_expressed_gene_dist.pl-29-
trinityrnaseq-2.11.0+dfsg/util/misc/plot_expressed_gene_dist.pl:30: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/plot_expressed_gene_dist.pl-31- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/process_GMAP_alignments_gff3_chimeras_ok.pl-109-
trinityrnaseq-2.11.0+dfsg/util/misc/process_GMAP_alignments_gff3_chimeras_ok.pl:110: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/process_GMAP_alignments_gff3_chimeras_ok.pl-111- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_GSNAP.pl-162-
trinityrnaseq-2.11.0+dfsg/util/misc/run_GSNAP.pl:163: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_GSNAP.pl-164- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_HiCpipe_bowtie.pl-41-
trinityrnaseq-2.11.0+dfsg/util/misc/run_HiCpipe_bowtie.pl:42: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_HiCpipe_bowtie.pl-43-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_TOPHAT.pl-95- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/run_TOPHAT.pl:96: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_TOPHAT.pl-97- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_bwa.pl-99-
trinityrnaseq-2.11.0+dfsg/util/misc/run_bwa.pl:100: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_bwa.pl-101-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_jellyfish.pl-60-
trinityrnaseq-2.11.0+dfsg/util/misc/run_jellyfish.pl:61: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_jellyfish.pl-62-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_read_simulator_per_gene.pl-91-
trinityrnaseq-2.11.0+dfsg/util/misc/run_read_simulator_per_gene.pl:92: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_read_simulator_per_gene.pl-93- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/run_trimmomatic_qual_trimming.pl-98-
trinityrnaseq-2.11.0+dfsg/util/misc/run_trimmomatic_qual_trimming.pl:99: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/run_trimmomatic_qual_trimming.pl-100-
##############################################
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_reads_sam_and_fa.pl-615- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_reads_sam_and_fa.pl:616: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/misc/simulate_reads_sam_and_fa.pl-617- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/batch_cmds.pl-54-
trinityrnaseq-2.11.0+dfsg/util/support_scripts/batch_cmds.pl:55: my @cmds = `cat $cmds_file`;
trinityrnaseq-2.11.0+dfsg/util/support_scripts/batch_cmds.pl-56- chomp @cmds;
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_to_frag_coords.pl-83-
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_to_frag_coords.pl:84:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_to_frag_coords.pl-85-
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_to_frag_coords.pl-266- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_to_frag_coords.pl:267: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_to_frag_coords.pl-268- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/ordered_fragment_coords_to_jaccard.pl-125- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/support_scripts/ordered_fragment_coords_to_jaccard.pl:126: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/ordered_fragment_coords_to_jaccard.pl-127- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/run_TMM_scale_matrix.pl-99- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/support_scripts/run_TMM_scale_matrix.pl:100: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/run_TMM_scale_matrix.pl-101-
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/run_UpperQuartileNormalization_matrix.pl-104- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/support_scripts/run_UpperQuartileNormalization_matrix.pl:105: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/run_UpperQuartileNormalization_matrix.pl-106-
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl-215-
trinityrnaseq-2.11.0+dfsg/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl:216: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl-217-
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/salmon_runner.pl-42- if ($@) {
trinityrnaseq-2.11.0+dfsg/util/support_scripts/salmon_runner.pl:43: my $errmsg = `cat $stderr_file`;
trinityrnaseq-2.11.0+dfsg/util/support_scripts/salmon_runner.pl-44- die "Error, cmd: $cmd failed with msg: $errmsg $@";
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_ordered_pair_jaccard.pl-118- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_ordered_pair_jaccard.pl:119: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/SAM_ordered_pair_jaccard.pl-120- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/bowtie2_wrapper.pl-162- foreach my $prog (@required_progs) {
trinityrnaseq-2.11.0+dfsg/util/support_scripts/bowtie2_wrapper.pl:163: my $path = `which $prog`;
trinityrnaseq-2.11.0+dfsg/util/support_scripts/bowtie2_wrapper.pl-164- unless ($path =~ /^\//) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/bowtie2_wrapper.pl-289-
trinityrnaseq-2.11.0+dfsg/util/support_scripts/bowtie2_wrapper.pl:290: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/bowtie2_wrapper.pl-291-
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/inchworm_transcript_splitter.pl-161-
trinityrnaseq-2.11.0+dfsg/util/support_scripts/inchworm_transcript_splitter.pl:162: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/inchworm_transcript_splitter.pl-163-
##############################################
trinityrnaseq-2.11.0+dfsg/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl-84-
trinityrnaseq-2.11.0+dfsg/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl:85: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl-86- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl-402- foreach my $tool (@tools) {
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl:403: my $p = `which $tool`;
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl-404- unless ($p =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl-562- unless (-d $output_dir) {
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl:563: system("mkdir -p $output_dir");
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl-564- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl-724-
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl:725: my $ret = system("bash", "-o", "pipefail", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/util/align_and_estimate_abundance.pl-726-
##############################################
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl-262-
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl:263:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl-264-
##############################################
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl-451- print STDERR "-removing tmp dir $tmp_directory\n";
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl:452: `rm -rf $tmp_directory`;
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl-453- }
##############################################
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl-787- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl:788: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/util/insilico_read_normalization.pl-789- my $end_time = time();
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trinityrnaseq-2.11.0+dfsg/util/abundance_estimates_to_matrix.pl-93- # allow for a file listing the various files.
trinityrnaseq-2.11.0+dfsg/util/abundance_estimates_to_matrix.pl:94: @files = `cat $quant_files`;
trinityrnaseq-2.11.0+dfsg/util/abundance_estimates_to_matrix.pl-95- chomp @files;
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trinityrnaseq-2.11.0+dfsg/util/abundance_estimates_to_matrix.pl-381- print STDERR $cmd;
trinityrnaseq-2.11.0+dfsg/util/abundance_estimates_to_matrix.pl:382: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/util/abundance_estimates_to_matrix.pl-383- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-38- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm:39: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-40- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-175-
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm:176: my $ret = system($cmdstr);
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-177- if ($ret) {
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trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-179- if (-e $tmp_stderr) {
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm:180: my $errmsg = `cat $tmp_stderr`;
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-181- if ($errmsg =~ /\w/) {
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trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-189- else {
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm:190: `touch $checkpoint_file`;
trinityrnaseq-2.11.0+dfsg/PerlLib/Pipeliner.pm-191- if ($?) {
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trinityrnaseq-2.11.0+dfsg/PerlLib/COMMON.pm-21-
trinityrnaseq-2.11.0+dfsg/PerlLib/COMMON.pm:22: my $help_text = `$sort_exec --help`;
trinityrnaseq-2.11.0+dfsg/PerlLib/COMMON.pm-23- if ($help_text =~ m|--parallel|) {
##############################################
trinityrnaseq-2.11.0+dfsg/PerlLib/Process_cmd.pm-17-
trinityrnaseq-2.11.0+dfsg/PerlLib/Process_cmd.pm:18: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/PerlLib/Process_cmd.pm-19- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/PerlLib/SingleLinkageClusterer.pm-49-
trinityrnaseq-2.11.0+dfsg/PerlLib/SingleLinkageClusterer.pm:50: my $ret = system ($cmd);
trinityrnaseq-2.11.0+dfsg/PerlLib/SingleLinkageClusterer.pm-51- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/PerlLib/CMD_processor.pm-16- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/PerlLib/CMD_processor.pm:17: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/PerlLib/CMD_processor.pm-18-
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOplot/data/Trinity_genes.counts.matrix.log_growth_vs_heatshock.edgeR.DE_results.P0.001_C2.DE.subset.GOseq.enriched-106-GO:0032787 0.045548219602159 0.989707071773572 4 55 monocarboxylic acid metabolic process BP 0.9999999999 BP monocarboxylic acid metabolic process TRINITY_DN2035_c0_g1, TRINITY_DN3593_c0_g1, TRINITY_DN653_c0_g2, TRINITY_DN7591_c0_g1
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOplot/data/Trinity_genes.counts.matrix.log_growth_vs_heatshock.edgeR.DE_results.P0.001_C2.DE.subset.GOseq.enriched:107:GO:0005737 0.0497457666874273 0.978052693016492 15 406 cytoplasm CC 0.9999999999 CC cytoplasm TRINITY_DN1069_c0_g2, TRINITY_DN1829_c0_g3, TRINITY_DN2035_c0_g1, TRINITY_DN2569_c0_g1, TRINITY_DN2570_c0_g1, TRINITY_DN2700_c0_g1, TRINITY_DN3776_c0_g1, TRINITY_DN4659_c0_g1, TRINITY_DN4689_c0_g1, TRINITY_DN5638_c0_g1, TRINITY_DN5652_c0_g1, TRINITY_DN7591_c0_g1, TRINITY_DN7600_c0_g1, TRINITY_DN7661_c0_g1, TRINITY_DN871_c0_g1
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOplot/data/Trinity_genes.counts.matrix.log_growth_vs_heatshock.edgeR.DE_results.P0.001_C2.DE.subset.GOseq.enriched-108-GO:0009295 0.0498248119113274 0.999383913408794 1 2 nucleoid CC 0.9999999999 CC nucleoid TRINITY_DN7657_c0_g1
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DE_analysis/Candida_example/validate_results.pl-19- my ($filename, $target_count, $optional_upper_bound) = @_;
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DE_analysis/Candida_example/validate_results.pl:20: my $count = `cat $filename | wc -l`;
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DE_analysis/Candida_example/validate_results.pl-21- $count =~ s/\s+//g;
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DE_analysis/Spombe_example/validate_results.pl-19- my ($filename, $target_count) = @_;
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DE_analysis/Spombe_example/validate_results.pl:20: my $count = `cat $filename | wc -l`;
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DE_analysis/Spombe_example/validate_results.pl-21- $count =~ s/\s+//g;
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-377-comp716_c0 comp716_c0_seq1 sp|O14274|DTD_SCHPO^O14274^Q:279-689,H:13-149^98.54%ID^E:4e-74^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|O14274|DTD_SCHPO^O14274^Q:196-237,H:1-14^100%ID^E:4e-74^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14274^O14274^Q:279-689,H:13-149^98.54%ID^E:1e-72^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O14274^O14274^Q:196-237,H:1-14^100%ID^E:1e-72^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . COG1490^Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus`GO:0051499^molecular_function^D-aminoacyl-tRNA deacylase activity`GO:0016788^molecular_function^hydrolase activity, acting on ester bonds`GO:0002181^biological_process^cytoplasmic translation`GO:0019478^biological_process^D-amino acid catabolic process`GO:0006412^biological_process^translation . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:378:comp716_c0 comp716_c0_seq2 sp|O14274|DTD_SCHPO^O14274^Q:196-642,H:1-149^100%ID^E:3e-79^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14274^O14274^Q:196-642,H:1-149^100%ID^E:7e-78^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.182 196-645[+] sp|Q6C7S6|DTD_YARLI^Q6C7S6^Q:1-148,H:1-151^57.89%ID^E:2e-43^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q6FT39|DTD_CANGA^Q6FT39^Q:1-149,H:1-149^55.03%ID^E:4e-43^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces`sp|Q6CRI9|DTD_KLULA^Q6CRI9^Q:1-148,H:1-149^53.02%ID^E:2e-40^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|Q07648|DTD_YEAST^Q07648^Q:1-147,H:1-148^50.68%ID^E:3e-37^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q75E22|DTD_ASHGO^Q75E22^Q:1-149,H:1-150^47.33%ID^E:2e-36^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium UniRef90_O14274^O14274^Q:1-149,H:1-149^100%ID^E:1e-81^RecName: Full=D-tyrosyl-tRNA(Tyr) deacylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02580.11^Tyr_Deacylase^D-Tyr-tRNA(Tyr) deacylase^2-146^E:7.9e-51 . . COG1490^Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0016788^molecular_function^hydrolase activity, acting on ester bonds`GO:0019478^biological_process^D-amino acid catabolic process GO:0016788^molecular_function^hydrolase activity, acting on ester bonds`GO:0019478^biological_process^D-amino acid catabolic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-379-comp717_c0 comp717_c0_seq1 sp|Q9P6K9|DOHH_SCHPO^Q9P6K9^Q:262-1215,H:1-318^100%ID^E:6e-179^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9P6K9^Q9P6K9^Q:262-1215,H:1-318^100%ID^E:2e-177^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.183 262-1218[+] sp|Q6CHJ7|DOHH_YARLI^Q6CHJ7^Q:1-312,H:1-308^57.01%ID^E:6e-97^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q59Z14|DOHH_CANAL^Q59Z14^Q:6-313,H:8-317^54.95%ID^E:1e-90^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|Q6BKA6|DOHH_DEBHA^Q6BKA6^Q:6-308,H:7-311^51.46%ID^E:2e-83^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|Q6CV81|DOHH_KLULA^Q6CV81^Q:6-311,H:13-320^53.85%ID^E:9e-83^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|Q6FUV3|DOHH_CANGA^Q6FUV3^Q:4-311,H:11-320^52.23%ID^E:2e-80^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces UniRef90_Q9P6K9^Q9P6K9^Q:1-318,H:1-318^100%ID^E:0^RecName: Full=Deoxyhypusine hydroxylase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF13646.1^HEAT_2^HEAT repeats^58-136^E:1.2e-10`PF03130.11^HEAT_PBS^PBS lyase HEAT-like repeat^96-118^E:0.0028`PF13646.1^HEAT_2^HEAT repeats^195-253^E:1.3e-06`PF13646.1^HEAT_2^HEAT repeats^214-297^E:4.4e-15`PF03130.11^HEAT_PBS^PBS lyase HEAT-like repeat^258-284^E:0.00016 . . COG1413^Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)- L-lysine intermediate to form hypusine, an essential post- translational modification only found in mature eIF-5A factor (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0019135^molecular_function^deoxyhypusine monooxygenase activity`GO:0046872^molecular_function^metal ion binding`GO:0008612^biological_process^peptidyl-lysine modification to peptidyl-hypusine . . .
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-410-comp746_c0 comp746_c0_seq1 . UniRef90_C6Y4B6^C6Y4B6^Q:246-320,H:1-25^100%ID^E:3e-07^RecName: Full=Non-classical export protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:411:comp748_c0 comp748_c0_seq1 sp|P21135|SECU_SCHPO^P21135^Q:3-764,H:48-301^100%ID^E:3e-125^RecName: Full=Securin;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P21135^P21135^Q:3-764,H:48-301^100%ID^E:8e-124^RecName: Full=Securin;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.208 3-767[+] . UniRef90_P21135^P21135^Q:1-254,H:48-301^100%ID^E:3e-141^RecName: Full=Securin;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04856.8^Securin^Securin sister-chromatid separation inhibitor^2-244^E:9.6e-55 . . . . GO:0051276^biological_process^chromosome organization`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-412-comp749_c0 comp749_c0_seq1 sp|O74964|RSC1_SCHPO^O74964^Q:32-2365,H:1-778^100%ID^E:0^RecName: Full=Chromatin structure-remodeling complex subunit rsc1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74964^O74964^Q:32-2365,H:1-778^100%ID^E:0^RecName: Full=Chromatin structure-remodeling complex subunit rsc1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.209 2-2368[+] sp|Q06488|RSC2_YEAST^Q06488^Q:224-520,H:280-566^38.61%ID^E:5e-58^RecName: Full=Chromatin structure-remodeling complex subunit RSC2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P53236|RSC1_YEAST^P53236^Q:224-527,H:240-536^37.94%ID^E:8e-58^RecName: Full=Chromatin structure-remodeling complex subunit RSC1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q86U86|PB1_HUMAN^Q86U86^Q:266-510,H:819-1099^26.83%ID^E:2e-26^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q90941|PB1_CHICK^Q90941^Q:356-510,H:949-1097^36.13%ID^E:2e-23^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q90941|PB1_CHICK^Q90941^Q:24-310,H:179-469^27.63%ID^E:8e-17^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q90941|PB1_CHICK^Q90941^Q:322-513,H:1123-1304^33.51%ID^E:1e-16^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q86U86|PB1_HUMAN^Q86U86^Q:321-589,H:1123-1372^28.36%ID^E:3e-15^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q86U86|PB1_HUMAN^Q86U86^Q:215-336,H:652-773^35.25%ID^E:6e-15^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q90941|PB1_CHICK^Q90941^Q:215-336,H:650-771^34.43%ID^E:2e-14^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q9NR48|ASH1L_HUMAN^Q9NR48^Q:382-478,H:2701-2797^32.99%ID^E:3e-13^RecName: Full=Histone-lysine N-methyltransferase ASH1L;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q86U86|PB1_HUMAN^Q86U86^Q:232-310,H:393-471^41.77%ID^E:9e-13^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q90941|PB1_CHICK^Q90941^Q:224-347,H:520-637^36.8%ID^E:2e-12^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q86U86|PB1_HUMAN^Q86U86^Q:224-347,H:522-639^36%ID^E:3e-12^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q86U86|PB1_HUMAN^Q86U86^Q:207-312,H:34-137^37.04%ID^E:2e-10^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q90941|PB1_CHICK^Q90941^Q:207-312,H:35-138^36.11%ID^E:2e-10^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q90941|PB1_CHICK^Q90941^Q:239-316,H:197-274^35.9%ID^E:8e-10^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q86U86|PB1_HUMAN^Q86U86^Q:239-316,H:200-277^35.9%ID^E:1e-09^RecName: Full=Protein polybromo-1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O74964^O74964^Q:11-788,H:1-778^100%ID^E:0^RecName: Full=Chromatin structure-remodeling complex subunit rsc1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00439.20^Bromodomain^Bromodomain^240-313^E:6.4e-21`PF01426.13^BAH^BAH domain^363-479^E:2.7e-20 . . COG5076^bromodomain GO:0016586^cellular_component^RSC complex`GO:0003682^molecular_function^chromatin binding`GO:0006200^biological_process^ATP catabolic process`GO:0043044^biological_process^ATP-dependent chromatin remodeling`GO:0007059^biological_process^chromosome segregation`GO:0000724^biological_process^double-strand break repair via homologous recombination`GO:0006303^biological_process^double-strand break repair via nonhomologous end joining`GO:0006337^biological_process^nucleosome disassembly`GO:0006276^biological_process^plasmid maintenance`GO:0042173^biological_process^regulation of sporulation resulting in formation of a cellular spore`GO:0006355^biological_process^regulation of transcription, DNA-templated`GO:0007062^biological_process^sister chromatid cohesion`GO:0030435^biological_process^sporulation resulting in formation of a cellular spore`GO:0006368^biological_process^transcription elongation from RNA polymerase II promoter GO:0005515^molecular_function^protein binding`GO:0003682^molecular_function^chromatin binding . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-459-comp792_c0 comp792_c0_seq1 sp|O60053|POF12_SCHPO^O60053^Q:133-1428,H:1-432^100%ID^E:0^RecName: Full=F-box protein pof12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60053^O60053^Q:133-1428,H:1-432^100%ID^E:0^RecName: Full=F-box protein pof12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.252 133-1431[+] . UniRef90_O60053^O60053^Q:1-432,H:1-432^100%ID^E:0^RecName: Full=F-box protein pof12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00646.28^F-box^F-box domain^15-53^E:1.4e-05`PF12937.2^F-box-like^F-box-like^17-57^E:9.5e-08 . . . . GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:460:comp793_c0 comp793_c0_seq1 sp|O14110|GCST_SCHPO^O14110^Q:8-1168,H:1-387^100%ID^E:0^RecName: Full=Probable aminomethyltransferase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14110^O14110^Q:8-1168,H:1-387^100%ID^E:0^RecName: Full=Probable aminomethyltransferase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.253 2-1171[+] sp|P93256|GCST_MESCR^P93256^Q:19-389,H:31-406^46.56%ID^E:4e-95^RecName: Full=Aminomethyltransferase, mitochondrial;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Aizoaceae; Mesembryanthemum`sp|O65396|GCST_ARATH^O65396^Q:19-389,H:31-406^46.56%ID^E:4e-95^RecName: Full=Aminomethyltransferase, mitochondrial;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|O49849|GCST_FLAAN^O49849^Q:3-389,H:16-405^45.18%ID^E:6e-95^RecName: Full=Aminomethyltransferase, mitochondrial;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Tageteae; Flaveria`sp|O23936|GCST_FLATR^O23936^Q:3-389,H:16-405^45.18%ID^E:1e-94^RecName: Full=Aminomethyltransferase, mitochondrial;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Tageteae; Flaveria`sp|P49363|GCST_FLAPR^P49363^Q:19-389,H:30-405^46.03%ID^E:2e-94^RecName: Full=Aminomethyltransferase, mitochondrial;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Tageteae; Flaveria UniRef90_O14110^O14110^Q:3-389,H:1-387^100%ID^E:0^RecName: Full=Probable aminomethyltransferase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01571.16^GCV_T^Aminomethyltransferase folate-binding domain^70-280^E:1e-66`PF08669.6^GCV_T_C^Glycine cleavage T-protein C-terminal barrel domain^289-380^E:5.6e-23 . . . GO:0005739^cellular_component^mitochondrion`GO:0004047^molecular_function^aminomethyltransferase activity`GO:0008483^molecular_function^transaminase activity`GO:0006546^biological_process^glycine catabolic process GO:0004047^molecular_function^aminomethyltransferase activity`GO:0006546^biological_process^glycine catabolic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-461-comp794_c0 comp794_c0_seq1 sp|Q09890|YC9G_SCHPO^Q09890^Q:696-1325,H:22-231^100%ID^E:3e-111^RecName: Full=Uncharacterized protein C584.16c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09890^Q09890^Q:696-1325,H:22-231^100%ID^E:1e-109^RecName: Full=Uncharacterized protein C584.16c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.254 633-1328[+] . UniRef90_Q09890^Q09890^Q:1-231,H:1-231^100%ID^E:1e-130^RecName: Full=Uncharacterized protein C584.16c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-504-comp835_c0 comp835_c0_seq2 sp|Q10110|RRN3_SCHPO^Q10110^Q:1601-3397,H:1-599^100%ID^E:0^RecName: Full=RNA polymerase I-specific transcription initiation factor rrn3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10110^Q10110^Q:1601-3397,H:1-599^100%ID^E:0^RecName: Full=RNA polymerase I-specific transcription initiation factor rrn3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.300 109-1038[+] . UniRef90_Q10111^Q10111^Q:1-309,H:1-309^100%ID^E:0^RecName: Full=Uncharacterized protein C18G6.12c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:505:comp835_c0 comp835_c0_seq2 sp|Q10110|RRN3_SCHPO^Q10110^Q:1601-3397,H:1-599^100%ID^E:0^RecName: Full=RNA polymerase I-specific transcription initiation factor rrn3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10110^Q10110^Q:1601-3397,H:1-599^100%ID^E:0^RecName: Full=RNA polymerase I-specific transcription initiation factor rrn3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.299 1601-3400[+] sp|Q9NYV6|RRN3_HUMAN^Q9NYV6^Q:58-598,H:56-614^25.89%ID^E:2e-46^RecName: Full=RNA polymerase I-specific transcription initiation factor RRN3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5R4N9|RRN3_PONAB^Q5R4N9^Q:23-598,H:26-613^25.16%ID^E:2e-42^RecName: Full=RNA polymerase I-specific transcription initiation factor RRN3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo`sp|P36070|RRN3_YEAST^P36070^Q:53-575,H:51-618^24.07%ID^E:6e-40^RecName: Full=RNA polymerase I-specific transcription initiation factor RRN3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P48322|YPJ1_CAEEL^P48322^Q:144-566,H:150-570^22.37%ID^E:7e-20^RecName: Full=Uncharacterized protein C36E8.1;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis`sp|Q2M238|RN3P1_HUMAN^Q2M238^Q:374-517,H:3-141^31.97%ID^E:2e-14^RecName: Full=Putative RRN3-like protein RRN3P1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q10110^Q10110^Q:1-599,H:1-599^100%ID^E:0^RecName: Full=RNA polymerase I-specific transcription initiation factor rrn3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05327.6^RRN3^RNA polymerase I specific transcription initiation factor RRN3^43-575^E:7e-166 . . . GO:0005730^cellular_component^nucleolus`GO:0005654^cellular_component^nucleoplasm`GO:0008283^biological_process^cell proliferation`GO:0007028^biological_process^cytoplasm organization`GO:0010467^biological_process^gene expression`GO:0048872^biological_process^homeostasis of number of cells`GO:0001701^biological_process^in utero embryonic development`GO:1902254^biological_process^negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator`GO:0007000^biological_process^nucleolus organization`GO:0045893^biological_process^positive regulation of transcription, DNA-templated`GO:2000142^biological_process^regulation of DNA-templated transcription, initiation`GO:0042254^biological_process^ribosome biogenesis`GO:0006360^biological_process^transcription from RNA polymerase I promoter`GO:0006361^biological_process^transcription initiation from RNA polymerase I promoter . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-506-comp836_c0 comp836_c0_seq1 sp|Q10439|YDE5_SCHPO^Q10439^Q:325-1548,H:92-486^96.57%ID^E:0^RecName: Full=Intermediate cleaving peptidase 55;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|Q10439|YDE5_SCHPO^Q10439^Q:3-278,H:1-92^100%ID^E:0^RecName: Full=Intermediate cleaving peptidase 55;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10439^Q10439^Q:325-1548,H:92-486^96.57%ID^E:0^RecName: Full=Intermediate cleaving peptidase 55;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_Q10439^Q10439^Q:3-278,H:1-92^100%ID^E:0^RecName: Full=Intermediate cleaving peptidase 55;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.301 457-1551[+] sp|P40051|ICP55_YEAST^P40051^Q:14-360,H:140-492^42.13%ID^E:3e-77^RecName: Full=Intermediate cleaving peptidase 55;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|B5DEQ3|XPP3_RAT^B5DEQ3^Q:9-362,H:146-501^36.09%ID^E:1e-58^RecName: Full=Probable Xaa-Pro aminopeptidase 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q9NQH7|XPP3_HUMAN^Q9NQH7^Q:9-362,H:146-502^34.44%ID^E:8e-57^RecName: Full=Probable Xaa-Pro aminopeptidase 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5R9W8|XPP3_PONAB^Q5R9W8^Q:9-362,H:146-502^33.88%ID^E:4e-56^RecName: Full=Probable Xaa-Pro aminopeptidase 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo`sp|Q54T46|XPP3_DICDI^Q54T46^Q:14-362,H:158-514^35.87%ID^E:3e-52^RecName: Full=Probable Xaa-Pro aminopeptidase 3;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_Q10439^Q10439^Q:1-364,H:123-486^100%ID^E:0^RecName: Full=Intermediate cleaving peptidase 55;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00557.19^Peptidase_M24^Metallopeptidase family M24^119-341^E:5e-50 . . COG0006^peptidase M24 GO:0031314^cellular_component^extrinsic component of mitochondrial inner membrane`GO:0005739^cellular_component^mitochondrion`GO:0005634^cellular_component^nucleus`GO:0004177^molecular_function^aminopeptidase activity`GO:0030145^molecular_function^manganese ion binding`GO:0008237^molecular_function^metallopeptidase activity`GO:0016485^biological_process^protein processing`GO:0050821^biological_process^protein stabilization . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-578-comp903_c0 comp903_c0_seq1 sp|O94236|EIF3D_SCHPO^O94236^Q:38-1738,H:1-567^99.82%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94236^O94236^Q:38-1738,H:1-567^99.82%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.371 2-1741[+] sp|A1DI25|EIF3D_NEOFI^A1DI25^Q:24-565,H:14-565^55.48%ID^E:4e-164^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Neosartorya`sp|Q4X054|EIF3D_ASPFU^Q4X054^Q:24-565,H:14-565^55.66%ID^E:1e-163^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|B0XU47|EIF3D_ASPFC^B0XU47^Q:24-565,H:14-565^55.66%ID^E:1e-163^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|A1C777|EIF3D_ASPCL^A1C777^Q:24-567,H:14-568^54.46%ID^E:9e-160^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|A5ABX6|EIF3D_ASPNC^A5ABX6^Q:24-565,H:14-566^55.48%ID^E:2e-158^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_O94236^O94236^Q:13-579,H:1-567^99.82%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 3 subunit D;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05091.7^eIF-3_zeta^Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)^17-560^E:2.3e-188 . . . GO:0016282^cellular_component^eukaryotic 43S preinitiation complex`GO:0033290^cellular_component^eukaryotic 48S preinitiation complex`GO:0005852^cellular_component^eukaryotic translation initiation factor 3 complex`GO:0003743^molecular_function^translation initiation factor activity`GO:0001731^biological_process^formation of translation preinitiation complex`GO:0006446^biological_process^regulation of translational initiation GO:0003743^molecular_function^translation initiation factor activity`GO:0005737^cellular_component^cytoplasm`GO:0005852^cellular_component^eukaryotic translation initiation factor 3 complex . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:579:comp904_c0 comp904_c0_seq1 sp|P78954|IF4E1_SCHPO^P78954^Q:3-653,H:2-218^100%ID^E:2e-126^RecName: Full=Eukaryotic translation initiation factor 4E-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P78954^P78954^Q:3-653,H:2-218^100%ID^E:5e-125^RecName: Full=Eukaryotic translation initiation factor 4E-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.372 3-656[+] sp|Q9P975|IF4E_CANAL^Q9P975^Q:24-208,H:17-203^48.4%ID^E:6e-47^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|Q9P974|IF4E_CANGA^Q9P974^Q:24-200,H:20-195^51.12%ID^E:2e-46^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces`sp|P07260|IF4E_YEAST^P07260^Q:12-207,H:12-204^45.69%ID^E:8e-43^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q75AV8|IF4E_ASHGO^Q75AV8^Q:9-211,H:7-208^41.67%ID^E:4e-41^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|O77210|IF4E_APLCA^O77210^Q:35-217,H:33-215^36.96%ID^E:5e-34^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Euopisthobranchia; Aplysiomorpha; Aplysioidea; Aplysiidae; Aplysia UniRef90_P78954^P78954^Q:1-217,H:2-218^100%ID^E:2e-124^RecName: Full=Eukaryotic translation initiation factor 4E-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01652.13^IF4E^Eukaryotic initiation factor 4E^38-200^E:1.9e-54 . . COG5053^eukaryotic translation initiation factor GO:0005737^cellular_component^cytoplasm`GO:0005845^cellular_component^mRNA cap binding complex`GO:0003743^molecular_function^translation initiation factor activity`GO:0006417^biological_process^regulation of translation`GO:0006413^biological_process^translational initiation GO:0003723^molecular_function^RNA binding`GO:0003743^molecular_function^translation initiation factor activity`GO:0006413^biological_process^translational initiation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-580-comp905_c0 comp905_c0_seq1 sp|O42842|APT_SCHPO^O42842^Q:124-603,H:29-188^100%ID^E:2e-85^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O42842^O42842^Q:124-603,H:29-188^100%ID^E:7e-84^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.373 127-606[+] sp|Q6CA53|APT_YARLI^Q6CA53^Q:1-150,H:31-182^57.89%ID^E:2e-43^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q5ALX8|APT_CANAL^Q5ALX8^Q:1-151,H:36-184^53.64%ID^E:2e-38^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|Q6BZF9|APT_DEBHA^Q6BZF9^Q:1-151,H:34-182^51.66%ID^E:2e-36^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|Q6CWV0|APT_KLULA^Q6CWV0^Q:1-152,H:31-184^48.7%ID^E:6e-35^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|Q1IKJ1|APT_KORVE^Q1IKJ1^Q:26-146,H:57-178^56.56%ID^E:1e-33^RecName: Full=Adenine phosphoribosyltransferase;^Bacteria; Acidobacteria; Candidatus Koribacter UniRef90_O42842^O42842^Q:1-159,H:30-188^100%ID^E:3e-85^RecName: Full=Adenine phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00156.22^Pribosyltran^Phosphoribosyl transferase domain^3-123^E:6.6e-17 . . COG0503^Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0003999^molecular_function^adenine phosphoribosyltransferase activity`GO:0046872^molecular_function^metal ion binding`GO:0006168^biological_process^adenine salvage`GO:0044209^biological_process^AMP salvage`GO:0006166^biological_process^purine ribonucleoside salvage GO:0009116^biological_process^nucleoside metabolic process . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-645-comp970_c0 comp970_c0_seq1 sp|Q9UTS0|PSP3_SCHPO^Q9UTS0^Q:322-1674,H:1-451^100%ID^E:0^RecName: Full=Subtilase-type proteinase psp3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTS0^Q9UTS0^Q:322-1674,H:1-451^100%ID^E:0^RecName: Full=Subtilase-type proteinase psp3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.436 322-1677[+] sp|C5P4Z8|SUB8_COCP7^C5P4Z8^Q:76-448,H:40-441^49.5%ID^E:1e-103^RecName: Full=Subtilisin-like protease CPC735_031240;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; mitosporic Onygenales; Coccidioides`sp|D4DKQ4|SUB8_TRIVH^D4DKQ4^Q:76-448,H:40-439^47.75%ID^E:8e-103^RecName: Full=Subtilisin-like protease 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; mitosporic Arthrodermataceae; Trichophyton`sp|D4AX50|SUB8_ARTBC^D4AX50^Q:76-448,H:40-439^47.75%ID^E:1e-102^RecName: Full=Subtilisin-like protease 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Arthroderma`sp|P87184|ALP2_ASPFU^P87184^Q:76-448,H:40-441^48.76%ID^E:2e-102^RecName: Full=Alkaline protease 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|B0Y473|ALP2_ASPFC^B0Y473^Q:76-448,H:40-441^48.76%ID^E:2e-102^RecName: Full=Alkaline protease 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_Q9UTS0^Q9UTS0^Q:1-451,H:1-451^100%ID^E:0^RecName: Full=Subtilase-type proteinase psp3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05922.11^Inhibitor_I9^Peptidase inhibitor I9^80-162^E:4.2e-15`PF00082.17^Peptidase_S8^Subtilase family^202-429^E:1.8e-51 sigP:1^20^0.765^YES . COG1404^peptidase (S8 and S53, subtilisin, kexin, sedolisin GO:0005576^cellular_component^extracellular region`GO:0004252^molecular_function^serine-type endopeptidase activity`GO:0043086^biological_process^negative regulation of catalytic activity`GO:0009405^biological_process^pathogenesis GO:0004252^molecular_function^serine-type endopeptidase activity`GO:0006508^biological_process^proteolysis . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:646:comp972_c0 comp972_c0_seq1 sp|O94272|ATG8_SCHPO^O94272^Q:105-467,H:1-121^100%ID^E:2e-54^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94272^O94272^Q:105-467,H:1-121^100%ID^E:5e-53^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.437 105-470[+] sp|Q2GVL1|ATG8_CHAGB^Q2GVL1^Q:1-117,H:1-117^86.32%ID^E:8e-55^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Chaetomium`sp|A7E8H4|ATG8_SCLS1^A7E8H4^Q:1-119,H:1-119^84.03%ID^E:1e-54^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia`sp|A6RPU4|ATG8_BOTFB^A6RPU4^Q:1-119,H:1-119^84.03%ID^E:2e-54^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Botryotinia`sp|Q8J282|ATG8_PODAS^Q8J282^Q:1-116,H:1-116^86.21%ID^E:2e-54^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Lasiosphaeriaceae; Podospora`sp|Q0V3Y9|ATG8_PHANO^Q0V3Y9^Q:1-116,H:1-116^86.21%ID^E:2e-54^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora UniRef90_O94272^O94272^Q:1-121,H:1-121^100%ID^E:5e-63^RecName: Full=Autophagy-related protein 8;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02991.11^Atg8^Autophagy protein Atg8 ubiquitin like^13-116^E:2.8e-50`PF04110.8^APG12^Ubiquitin-like autophagy protein Apg12^40-116^E:1.8e-06 . . . GO:0000421^cellular_component^autophagic vacuole membrane`GO:0033110^cellular_component^Cvt vesicle membrane`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0000045^biological_process^autophagic vacuole assembly`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-647-comp973_c0 comp973_c0_seq1 sp|Q9UUC6|SMD3_SCHPO^Q9UUC6^Q:20-298,H:1-93^100%ID^E:1e-48^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUC6^Q9UUC6^Q:20-298,H:1-93^100%ID^E:5e-47^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.438 2-313[+] sp|P62323|SMD3_XENLA^P62323^Q:11-88,H:7-84^74.36%ID^E:5e-30^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|P62318|SMD3_HUMAN^P62318^Q:11-88,H:7-84^74.36%ID^E:5e-30^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P43321|SMD3_YEAST^P43321^Q:9-101,H:6-97^54.84%ID^E:2e-27^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q17348|SMD3_CAEEL^Q17348^Q:5-88,H:2-85^60.71%ID^E:6e-26^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis`sp|Q43582|LSM4_TOBAC^Q43582^Q:9-79,H:2-73^40.28%ID^E:1e-09^RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana UniRef90_Q9UUC6^Q9UUC6^Q:7-103,H:1-97^100%ID^E:2e-50^RecName: Full=Small nuclear ribonucleoprotein Sm D3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01423.17^LSM^LSM domain^13-76^E:5e-15 . . . GO:0005829^cellular_component^cytosol`GO:0034709^cellular_component^methylosome`GO:0034715^cellular_component^pICln-Sm protein complex`GO:0034719^cellular_component^SMN-Sm protein complex`GO:0005685^cellular_component^U1 snRNP`GO:0005687^cellular_component^U4 snRNP`GO:0071208^molecular_function^histone pre-mRNA DCP binding`GO:0000387^biological_process^spliceosomal snRNP assembly . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-826-comp1132_c0 comp1132_c0_seq1 sp|Q9Y7Y2|SLU7_SCHPO^Q9Y7Y2^Q:228-1364,H:1-379^100%ID^E:0^RecName: Full=Pre-mRNA-splicing factor slu7;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7Y2^Q9Y7Y2^Q:228-1364,H:1-379^100%ID^E:0^RecName: Full=Pre-mRNA-splicing factor slu7;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.612 228-1367[+] sp|Q5B3U2|SLU7_EMENI^Q5B3U2^Q:49-329,H:14-298^44.93%ID^E:3e-62^RecName: Full=Pre-mRNA-splicing factor slu7;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q51LA6|SLU7_MAGO7^Q51LA6^Q:48-335,H:22-306^44.22%ID^E:6e-60^RecName: Full=Pre-mRNA-splicing factor SLU7;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Magnaporthales; Magnaporthaceae; Magnaporthe`sp|Q4WWR2|SLU7_ASPFU^Q4WWR2^Q:49-329,H:14-300^43.62%ID^E:5e-56^RecName: Full=Pre-mRNA-splicing factor slu7;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|P0CR52|SLU7_CRYNJ^P0CR52^Q:46-329,H:42-356^40.25%ID^E:2e-55^RecName: Full=Pre-mRNA-splicing factor SLU7;^Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex`sp|P0CR53|SLU7_CRYNB^P0CR53^Q:46-329,H:42-356^40.25%ID^E:2e-55^RecName: Full=Pre-mRNA-splicing factor SLU7;^Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex UniRef90_Q9Y7Y2^Q9Y7Y2^Q:1-379,H:1-379^100%ID^E:0^RecName: Full=Pre-mRNA-splicing factor slu7;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF14392.1^zf-CCHC_4^Zinc knuckle^112-126^E:0.12`PF11708.3^Slu7^Pre-mRNA splicing Prp18-interacting factor^153-378^E:1e-53 . . . GO:0005681^cellular_component^spliceosomal complex`GO:0003676^molecular_function^nucleic acid binding`GO:0008270^molecular_function^zinc ion binding`GO:0006397^biological_process^mRNA processing`GO:0008380^biological_process^RNA splicing . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:827:comp1133_c0 comp1133_c0_seq1 sp|Q9Y7Y6|YOY4_SCHPO^Q9Y7Y6^Q:49-921,H:1-291^100%ID^E:1e-163^RecName: Full=Uncharacterized protein C342.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7Y6^Q9Y7Y6^Q:49-921,H:1-291^100%ID^E:3e-162^RecName: Full=Uncharacterized protein C342.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.613 1-924[+] sp|Q6NZ09|ADRM1_DANRE^Q6NZ09^Q:19-129,H:22-129^38.74%ID^E:4e-20^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q6P877|ADRM1_XENTR^Q6P877^Q:19-129,H:22-129^37.84%ID^E:8e-20^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q6GN67|ADM1A_XENLA^Q6GN67^Q:19-129,H:22-129^37.84%ID^E:1e-19^RecName: Full=Proteasomal ubiquitin receptor ADRM1-A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q98SH3|ADRM1_CHICK^Q98SH3^Q:19-129,H:23-130^37.84%ID^E:2e-19^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q7ZXD6|ADM1B_XENLA^Q7ZXD6^Q:19-129,H:22-129^36.04%ID^E:7e-19^RecName: Full=Proteasomal ubiquitin receptor ADRM1-B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q98SH3|ADRM1_CHICK^Q98SH3^Q:185-300,H:267-384^35.59%ID^E:9e-11^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q6P877|ADRM1_XENTR^Q6P877^Q:185-296,H:266-380^37.29%ID^E:2e-09^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q7ZXD6|ADM1B_XENLA^Q7ZXD6^Q:185-296,H:266-380^37.29%ID^E:2e-09^RecName: Full=Proteasomal ubiquitin receptor ADRM1-B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q6GN67|ADM1A_XENLA^Q6GN67^Q:185-296,H:266-380^36.44%ID^E:2e-08^RecName: Full=Proteasomal ubiquitin receptor ADRM1-A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q6NZ09|ADRM1_DANRE^Q6NZ09^Q:185-296,H:271-385^32.17%ID^E:7e-06^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio UniRef90_Q9Y7Y6^Q9Y7Y6^Q:17-307,H:1-291^100%ID^E:2e-169^RecName: Full=Uncharacterized protein C342.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04683.8^Proteasom_Rpn13^Proteasome complex subunit Rpn13 ubiquitin receptor^26-110^E:9.8e-26 . . . GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0000502^cellular_component^proteasome complex`GO:0061133^molecular_function^endopeptidase activator activity`GO:0010950^biological_process^positive regulation of endopeptidase activity`GO:0043248^biological_process^proteasome assembly GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-828-comp1134_c0 comp1134_c0_seq1 sp|Q09709|YA32_SCHPO^Q09709^Q:71-1252,H:1-394^100%ID^E:0^RecName: Full=Uncharacterized protein C18B11.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09709^Q09709^Q:71-1252,H:1-394^100%ID^E:0^RecName: Full=Uncharacterized protein C18B11.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.614 71-1255[+] sp|Q12069|PUS9_YEAST^Q12069^Q:12-381,H:94-460^47.92%ID^E:2e-100^RecName: Full=tRNA pseudouridine(32) synthase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q12362|RIB2_YEAST^Q12362^Q:12-382,H:67-433^46.75%ID^E:1e-99^RecName: Full=Bifunctional protein RIB2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q8IZ73|RUSD2_HUMAN^Q8IZ73^Q:10-387,H:128-545^38.63%ID^E:2e-79^RecName: Full=RNA pseudouridylate synthase domain-containing protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q0E0Y3|PUS7_ORYSJ^Q0E0Y3^Q:14-381,H:21-382^37.6%ID^E:9e-68^RecName: Full=RNA pseudouridine synthase 7;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza`sp|Q9LU60|PUS7_ARATH^Q9LU60^Q:14-380,H:46-393^35.54%ID^E:6e-61^RecName: Full=RNA pseudouridine synthase 7;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_Q09709^Q09709^Q:1-394,H:1-394^100%ID^E:0^RecName: Full=Uncharacterized protein C18B11.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00849.17^PseudoU_synth_2^RNA pseudouridylate synthase^114-260^E:1e-29 . . COG0564^Pseudouridine synthase GO:0005739^cellular_component^mitochondrion`GO:0009982^molecular_function^pseudouridine synthase activity`GO:0003723^molecular_function^RNA binding`GO:0031119^biological_process^tRNA pseudouridine synthesis GO:0003723^molecular_function^RNA binding`GO:0009982^molecular_function^pseudouridine synthase activity`GO:0001522^biological_process^pseudouridine synthesis`GO:0009451^biological_process^RNA modification . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-906-comp1212_c0 comp1212_c0_seq1 sp|Q9P544|VDAC_SCHPO^Q9P544^Q:319-1137,H:1-273^100%ID^E:8e-153^RecName: Full=Probable mitochondrial outer membrane protein porin;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9P544^Q9P544^Q:319-1137,H:1-273^100%ID^E:2e-151^RecName: Full=Probable mitochondrial outer membrane protein porin;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.695 319-1167[+] sp|P07144|VDAC_NEUCR^P07144^Q:1-282,H:1-283^46.83%ID^E:8e-64^RecName: Full=Mitochondrial outer membrane protein porin;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|P83781|VDAC_CANAL^P83781^Q:1-282,H:1-282^41.2%ID^E:2e-58^RecName: Full=Mitochondrial outer membrane protein porin;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|P04840|VDAC1_YEAST^P04840^Q:1-282,H:1-283^34.62%ID^E:2e-45^RecName: Full=Mitochondrial outer membrane protein porin 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P40478|VDAC2_YEAST^P40478^Q:1-281,H:1-280^33.1%ID^E:1e-35^RecName: Full=Mitochondrial outer membrane protein porin 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P82013|VDAC2_MELGA^P82013^Q:3-282,H:3-282^30.31%ID^E:7e-34^RecName: Full=Voltage-dependent anion-selective channel protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Meleagridinae; Meleagris UniRef90_Q9P544^Q9P544^Q:1-282,H:1-282^100%ID^E:2e-161^RecName: Full=Probable mitochondrial outer membrane protein porin;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01459.17^Porin_3^Eukaryotic porin^2-275^E:5.8e-59 . . . GO:0005741^cellular_component^mitochondrial outer membrane`GO:0046930^cellular_component^pore complex`GO:0015288^molecular_function^porin activity`GO:0008308^molecular_function^voltage-gated anion channel activity GO:0055085^biological_process^transmembrane transport`GO:0005741^cellular_component^mitochondrial outer membrane . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:907:comp1213_c0 comp1213_c0_seq1 sp|O14037|YEY4_SCHPO^O14037^Q:301-675,H:1-125^100%ID^E:2e-67^RecName: Full=UPF0538 protein C2C4.04c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14037^O14037^Q:301-675,H:1-125^100%ID^E:6e-66^RecName: Full=UPF0538 protein C2C4.04c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.696 301-678[+] sp|P36154|AIM29_YEAST^P36154^Q:1-124,H:29-155^45.31%ID^E:3e-23^RecName: Full=Altered inheritance rate of mitochondria protein 29;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q54R16|U538_DICDI^Q54R16^Q:6-124,H:8-124^42.86%ID^E:6e-23^RecName: Full=UPF0538 protein;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|A4IGN3|CB076_XENTR^A4IGN3^Q:3-124,H:5-126^38.21%ID^E:2e-17^RecName: Full=UPF0538 protein C2orf76 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q66IB8|CB076_DANRE^Q66IB8^Q:4-124,H:6-126^39.02%ID^E:2e-17^RecName: Full=UPF0538 protein C2orf76 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q5RBS7|CB076_PONAB^Q5RBS7^Q:5-124,H:7-126^39.52%ID^E:6e-17^RecName: Full=UPF0538 protein C2orf76 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo UniRef90_O14037^O14037^Q:1-125,H:1-125^100%ID^E:2e-67^RecName: Full=UPF0538 protein C2C4.04c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10209.4^DUF2340^Uncharacterized conserved protein (DUF2340)^6-124^E:6.7e-49`PF05339.6^DUF739^Protein of unknown function (DUF739)^11-87^E:0.017 . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-908-comp1214_c0 comp1214_c0_seq1 sp|O60077|ARZ1_SCHPO^O60077^Q:179-1654,H:1-492^100%ID^E:0^RecName: Full=Armadillo repeat-containing zfs1 target protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60077^O60077^Q:179-1654,H:1-492^100%ID^E:0^RecName: Full=Armadillo repeat-containing zfs1 target protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.697 179-1657[+] . UniRef90_O60077^O60077^Q:1-492,H:1-492^100%ID^E:0^RecName: Full=Armadillo repeat-containing zfs1 target protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1071-comp1404_c0 comp1404_c0_seq1 sp|P87156|TSR4_SCHPO^P87156^Q:832-2019,H:1-396^100%ID^E:0^RecName: Full=Probable 20S rRNA accumulation protein 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87156^P87156^Q:832-2019,H:1-396^100%ID^E:0^RecName: Full=Probable 20S rRNA accumulation protein 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.847 3-635[+] sp|Q7ZUU1|UNC50_DANRE^Q7ZUU1^Q:1-199,H:51-248^39.81%ID^E:4e-35^RecName: Full=Protein unc-50 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q53HI1|UNC50_HUMAN^Q53HI1^Q:1-196,H:53-245^43.28%ID^E:1e-34^RecName: Full=Protein unc-50 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|O55227|UNC50_RAT^O55227^Q:1-196,H:53-245^42.29%ID^E:1e-34^RecName: Full=Protein unc-50 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q3ZBG6|UNC50_BOVIN^Q3ZBG6^Q:1-196,H:53-245^42.79%ID^E:1e-34^RecName: Full=Protein unc-50 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q54DD7|UNC50_DICDI^Q54DD7^Q:8-207,H:59-258^37.13%ID^E:3e-34^RecName: Full=Protein unc-50 homolog;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_P87155^P87155^Q:1-210,H:26-235^100%ID^E:8e-118^RecName: Full=Protein GMH1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05216.8^UNC-50^UNC-50 family^1-206^E:5.7e-77 . ExpAA=110.97^PredHel=5^Topology=i30-52o62-84i117-136o141-163i176-198o . GO:0000139^cellular_component^Golgi membrane`GO:0016021^cellular_component^integral component of membrane`GO:0005637^cellular_component^nuclear inner membrane`GO:0003723^molecular_function^RNA binding`GO:0015031^biological_process^protein transport . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1072:comp1404_c0 comp1404_c0_seq1 sp|P87156|TSR4_SCHPO^P87156^Q:832-2019,H:1-396^100%ID^E:0^RecName: Full=Probable 20S rRNA accumulation protein 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87156^P87156^Q:832-2019,H:1-396^100%ID^E:0^RecName: Full=Probable 20S rRNA accumulation protein 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.846 832-2022[+] sp|P25040|TSR4_YEAST^P25040^Q:10-396,H:24-405^28.31%ID^E:2e-27^RecName: Full=20S rRNA accumulation protein 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5ZID2|PDD2L_CHICK^Q5ZID2^Q:43-377,H:44-356^25.94%ID^E:9e-12^RecName: Full=Programmed cell death protein 2-like;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q2YDC9|PDCD2_BOVIN^Q2YDC9^Q:10-391,H:9-335^24.56%ID^E:4e-11^RecName: Full=Programmed cell death protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|P47816|PDCD2_RAT^P47816^Q:12-391,H:11-334^22.34%ID^E:3e-08^RecName: Full=Programmed cell death protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q16342|PDCD2_HUMAN^Q16342^Q:256-376,H:210-325^30.71%ID^E:1e-06^RecName: Full=Programmed cell death protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_P87156^P87156^Q:1-396,H:1-396^100%ID^E:0^RecName: Full=Probable 20S rRNA accumulation protein 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04194.8^PDCD2_C^Programmed cell death protein 2, C-terminal putative domain^263-396^E:4.7e-34 . . . GO:0005737^cellular_component^cytoplasm`GO:0030490^biological_process^maturation of SSU-rRNA GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1073-comp1405_c0 comp1405_c0_seq1 sp|O60183|SAT1_SCHPO^O60183^Q:3-341,H:438-550^100%ID^E:3e-35^RecName: Full=Protein sat1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60183^O60183^Q:3-341,H:438-550^100%ID^E:9e-34^RecName: Full=Protein sat1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . NOG114828^Amidohydrolase family GO:0005829^cellular_component^cytosol`GO:0005794^cellular_component^Golgi apparatus`GO:0032045^cellular_component^guanyl-nucleotide exchange factor complex`GO:0005634^cellular_component^nucleus`GO:0042147^biological_process^retrograde transport, endosome to Golgi . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1262-comp1653_c1 comp1653_c1_seq1 sp|Q9UTA5|TYW3_SCHPO^Q9UTA5^Q:428-60,H:115-237^100%ID^E:3e-65^RecName: Full=tRNA wybutosine-synthesizing protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTA5^Q9UTA5^Q:428-60,H:115-237^100%ID^E:1e-63^RecName: Full=tRNA wybutosine-synthesizing protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . COG1590^tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus`GO:0008175^molecular_function^tRNA methyltransferase activity`GO:0030488^biological_process^tRNA methylation`GO:0031591^biological_process^wybutosine biosynthetic process . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1263:comp1654_c0 comp1654_c0_seq1 sp|Q9UTJ2|PMM_SCHPO^Q9UTJ2^Q:39-809,H:1-257^100%ID^E:2e-147^RecName: Full=Phosphomannomutase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTJ2^Q9UTJ2^Q:39-809,H:1-257^100%ID^E:6e-146^RecName: Full=Phosphomannomutase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.980 3-812[+] sp|P07283|PMM_YEAST^P07283^Q:13-269,H:1-254^69.65%ID^E:3e-104^RecName: Full=Phosphomannomutase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P31353|PMM_CANAL^P31353^Q:24-269,H:9-251^69.92%ID^E:7e-103^RecName: Full=Phosphomannomutase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|O80840|PMM_ARATH^O80840^Q:22-267,H:4-244^62.6%ID^E:6e-88^RecName: Full=Phosphomannomutase;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q1W374|PMM_WHEAT^Q1W374^Q:21-267,H:5-246^60.32%ID^E:5e-85^RecName: Full=Phosphomannomutase;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Pooideae; Triticeae; Triticum`sp|Q7XPW5|PMM_ORYSJ^Q7XPW5^Q:21-267,H:4-245^60.32%ID^E:6e-85^RecName: Full=Phosphomannomutase;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza UniRef90_Q9UTJ2^Q9UTJ2^Q:13-269,H:1-257^100%ID^E:4e-149^RecName: Full=Phosphomannomutase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03332.8^PMM^Eukaryotic phosphomannomutase^47-268^E:1e-115 . . COG0561^,hydrolase GO:0005829^cellular_component^cytosol`GO:0004615^molecular_function^phosphomannomutase activity`GO:0009298^biological_process^GDP-mannose biosynthetic process`GO:0019307^biological_process^mannose biosynthetic process`GO:0045047^biological_process^protein targeting to ER GO:0004615^molecular_function^phosphomannomutase activity`GO:0019307^biological_process^mannose biosynthetic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1264-comp1655_c0 comp1655_c0_seq1 sp|Q09933|DIS1_SCHPO^Q09933^Q:1-534,H:705-882^100%ID^E:3e-89^RecName: Full=Phosphoprotein p93;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09933^Q09933^Q:1-534,H:705-882^100%ID^E:9e-88^RecName: Full=Phosphoprotein p93;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.981 1-537[+] . UniRef90_Q09933^Q09933^Q:1-178,H:705-882^100%ID^E:1e-100^RecName: Full=Phosphoprotein p93;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1495-comp1930_c1 comp1930_c1_seq1 . . . . . . . . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1496:comp1931_c0 comp1931_c0_seq1 sp|O74743|IF4E2_SCHPO^O74743^Q:114-836,H:1-241^100%ID^E:9e-140^RecName: Full=Eukaryotic translation initiation factor 4E-2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74743^O74743^Q:114-836,H:1-241^100%ID^E:3e-138^RecName: Full=Eukaryotic translation initiation factor 4E-2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1169 114-845[+] sp|Q9P974|IF4E_CANGA^Q9P974^Q:60-226,H:29-195^50%ID^E:9e-45^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces`sp|Q9P975|IF4E_CANAL^Q9P975^Q:48-234,H:14-203^43.46%ID^E:1e-42^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|Q75AV8|IF4E_ASHGO^Q75AV8^Q:64-243,H:35-211^46.41%ID^E:7e-41^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|P07260|IF4E_YEAST^P07260^Q:60-230,H:33-203^46.51%ID^E:8e-41^RecName: Full=Eukaryotic translation initiation factor 4E;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|O61955|IF4E3_CAEEL^O61955^Q:46-243,H:9-215^37.02%ID^E:1e-32^RecName: Full=Eukaryotic translation initiation factor 4E-3;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis UniRef90_O74743^O74743^Q:1-243,H:1-243^100%ID^E:1e-140^RecName: Full=Eukaryotic translation initiation factor 4E-2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01652.13^IF4E^Eukaryotic initiation factor 4E^65-226^E:1.3e-55 . . . GO:0005737^cellular_component^cytoplasm`GO:0003743^molecular_function^translation initiation factor activity`GO:0006417^biological_process^regulation of translation GO:0003723^molecular_function^RNA binding`GO:0003743^molecular_function^translation initiation factor activity`GO:0006413^biological_process^translational initiation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1497-comp1932_c0 comp1932_c0_seq1 sp|O14194|GGT2_SCHPO^O14194^Q:298-810,H:1-171^100%ID^E:8e-79^RecName: Full=Gamma-glutamyltranspeptidase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14194^O14194^Q:298-810,H:1-171^100%ID^E:2e-77^RecName: Full=Gamma-glutamyltranspeptidase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1170 298-813[+] sp|P18956|GGT_ECOLI^P18956^Q:75-159,H:42-126^42.35%ID^E:1e-14^RecName: Full=Gamma-glutamyltranspeptidase;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia`sp|Q05902|ECM38_YEAST^Q05902^Q:79-171,H:105-201^39.18%ID^E:2e-13^RecName: Full=Gamma-glutamyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P20735|GGT1_PIG^P20735^Q:81-169,H:39-128^43.33%ID^E:2e-12^RecName: Full=Gamma-glutamyltranspeptidase 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus`sp|P07314|GGT1_RAT^P07314^Q:81-162,H:39-121^44.58%ID^E:5e-12^RecName: Full=Gamma-glutamyltranspeptidase 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P19440|GGT1_HUMAN^P19440^Q:81-162,H:40-122^44.58%ID^E:1e-11^RecName: Full=Gamma-glutamyltranspeptidase 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O14194^O14194^Q:1-171,H:1-171^100%ID^E:3e-98^RecName: Full=Gamma-glutamyltranspeptidase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01019.16^G_glu_transpept^Gamma-glutamyltranspeptidase^97-170^E:4.8e-24 . ExpAA=43.04^PredHel=2^Topology=i46-68o109-131i COG0405^Gamma-glutamyltranspeptidase (EC 2.3.2.2) GO:0042597^cellular_component^periplasmic space`GO:0003840^molecular_function^gamma-glutamyltransferase activity`GO:0036374^molecular_function^glutathione hydrolase activity`GO:0006750^biological_process^glutathione biosynthetic process GO:0003840^molecular_function^gamma-glutamyltransferase activity`GO:0006749^biological_process^glutathione metabolic process . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1664-comp2103_c0 comp2103_c0_seq1 sp|P78794|CWC15_SCHPO^P78794^Q:49-843,H:1-265^100%ID^E:2e-108^RecName: Full=Pre-mRNA-splicing factor cwf15;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P78794^P78794^Q:49-843,H:1-265^100%ID^E:6e-107^RecName: Full=Pre-mRNA-splicing factor cwf15;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1310 49-846[+] sp|Q5B020|CWC15_EMENI^Q5B020^Q:1-264,H:1-231^40.67%ID^E:1e-32^RecName: Full=Pre-mRNA-splicing factor cwc15;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|O45766|CWC15_CAEEL^O45766^Q:1-264,H:1-229^34.66%ID^E:6e-25^RecName: Full=Protein CWC15 homolog;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis`sp|Q0VFP5|CWC15_XENTR^Q0VFP5^Q:170-264,H:127-226^51%ID^E:2e-18^RecName: Full=Protein CWC15 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q2KJD3|CWC15_BOVIN^Q2KJD3^Q:167-264,H:128-230^50.49%ID^E:6e-17^RecName: Full=Spliceosome-associated protein CWC15 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q6C0E6|CWC15_YARLI^Q6C0E6^Q:170-264,H:126-214^45.92%ID^E:2e-13^RecName: Full=Pre-mRNA-splicing factor CWC15;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q6C0E6|CWC15_YARLI^Q6C0E6^Q:1-55,H:1-56^50%ID^E:3e-07^RecName: Full=Pre-mRNA-splicing factor CWC15;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q0VFP5|CWC15_XENTR^Q0VFP5^Q:1-53,H:1-59^47.46%ID^E:2e-06^RecName: Full=Protein CWC15 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q2KJD3|CWC15_BOVIN^Q2KJD3^Q:1-53,H:1-59^47.46%ID^E:3e-06^RecName: Full=Spliceosome-associated protein CWC15 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos UniRef90_P78794^P78794^Q:1-265,H:1-265^100%ID^E:2e-150^RecName: Full=Pre-mRNA-splicing factor cwf15;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04889.7^Cwf_Cwc_15^Cwf15/Cwc15 cell cycle control protein^1-264^E:4.2e-71 . . . GO:0005634^cellular_component^nucleus`GO:0005681^cellular_component^spliceosomal complex`GO:0003723^molecular_function^RNA binding`GO:0000398^biological_process^mRNA splicing, via spliceosome GO:0000398^biological_process^mRNA splicing, via spliceosome`GO:0005681^cellular_component^spliceosomal complex . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1665:comp2104_c0 comp2104_c0_seq1 sp|Q9UUG2|YFT6_SCHPO^Q9UUG2^Q:505-2367,H:1-621^100%ID^E:0^RecName: Full=Uncharacterized leucine-rich repeat-containing protein C926.06c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUG2^Q9UUG2^Q:505-2367,H:1-621^100%ID^E:0^RecName: Full=Uncharacterized leucine-rich repeat-containing protein C926.06c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1311 505-2370[+] sp|Q6P4K6|S11IP_XENTR^Q6P4K6^Q:327-540,H:156-374^30.09%ID^E:3e-09^RecName: Full=Serine/threonine-protein kinase 11-interacting protein;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q5ZLN0|LRC40_CHICK^Q5ZLN0^Q:331-440,H:79-189^37.17%ID^E:3e-07^RecName: Full=Leucine-rich repeat-containing protein 40;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q9NJE9|TILB_TRYBB^Q9NJE9^Q:349-486,H:24-151^30.71%ID^E:8e-07^RecName: Full=Protein tilB homolog;^Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma`sp|Q55FD8|GEFV_DICDI^Q55FD8^Q:211-446,H:58-290^30.04%ID^E:9e-07^RecName: Full=Ras guanine nucleotide exchange factor V;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q9HB75|PIDD_HUMAN^Q9HB75^Q:334-449,H:173-293^35.77%ID^E:1e-06^RecName: Full=p53-induced protein with a death domain;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q9UUG2^Q9UUG2^Q:1-621,H:1-621^100%ID^E:0^RecName: Full=Uncharacterized leucine-rich repeat-containing protein C926.06c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF13504.1^LRR_7^Leucine rich repeat^209-224^E:39`PF13504.1^LRR_7^Leucine rich repeat^333-348^E:36`PF13855.1^LRR_8^Leucine rich repeat^335-391^E:3.4e-10`PF13516.1^LRR_6^Leucine Rich repeat^355-370^E:1.8`PF12799.2^LRR_4^Leucine Rich repeats (2 copies)^357-395^E:6.7e-08`PF00560.28^LRR_1^Leucine Rich Repeat^357-376^E:0.036`PF13504.1^LRR_7^Leucine rich repeat^357-372^E:0.36`PF13855.1^LRR_8^Leucine rich repeat^379-437^E:1.6e-06`PF13504.1^LRR_7^Leucine rich repeat^380-392^E:530`PF13504.1^LRR_7^Leucine rich repeat^403-419^E:1.3`PF12799.2^LRR_4^Leucine Rich repeats (2 copies)^404-440^E:1.4e-07`PF00560.28^LRR_1^Leucine Rich Repeat^404-423^E:0.81`PF13504.1^LRR_7^Leucine rich repeat^425-439^E:7.3 . . COG4886^leucine Rich Repeat GO:0005737^cellular_component^cytoplasm GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1666-comp2105_c0 comp2105_c0_seq1 sp|Q9UUK3|YLO3_SCHPO^Q9UUK3^Q:1-924,H:16-323^99.68%ID^E:8e-174^RecName: Full=Ubiquitin thioesterase otu2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUK3^Q9UUK3^Q:1-924,H:16-323^99.68%ID^E:2e-172^RecName: Full=Ubiquitin thioesterase otu2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1312 1-927[+] sp|P38747|OTU2_YEAST^P38747^Q:10-304,H:13-304^34.11%ID^E:5e-37^RecName: Full=OTU domain-containing protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5ZIP6|OTU6B_CHICK^Q5ZIP6^Q:10-304,H:15-290^28.86%ID^E:4e-31^RecName: Full=OTU domain-containing protein 6B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q6GM06|OTU6B_XENLA^Q6GM06^Q:13-304,H:13-284^29.87%ID^E:7e-31^RecName: Full=OTU domain-containing protein 6B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q7L8S5|OTU6A_HUMAN^Q7L8S5^Q:11-304,H:9-272^30.43%ID^E:5e-30^RecName: Full=OTU domain-containing protein 6A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5M8L0|OTU6B_XENTR^Q5M8L0^Q:13-304,H:13-284^29.33%ID^E:2e-29^RecName: Full=OTU domain-containing protein 6B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana UniRef90_Q9UUK3^Q9UUK3^Q:1-308,H:16-323^99.68%ID^E:5e-178^RecName: Full=Ubiquitin thioesterase otu2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02338.14^OTU^OTU-like cysteine protease^176-301^E:4.3e-28`PF10275.4^Peptidase_C65^Peptidase C65 Otubain^204-269^E:1.3e-05 . . COG5539^otu domain-containing protein . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1706-comp2151_c0 comp2151_c0_seq1 sp|P87297|DAD1_SCHPO^P87297^Q:43-312,H:1-90^100%ID^E:7e-36^RecName: Full=DASH complex subunit dad1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87297^P87297^Q:43-312,H:1-90^100%ID^E:3e-34^RecName: Full=DASH complex subunit dad1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . fuNOG08879^MFS multidrug transporter GO:0000779^cellular_component^condensed chromosome, centromeric region`GO:0005829^cellular_component^cytosol`GO:0042729^cellular_component^DASH complex`GO:0044732^cellular_component^mitotic spindle pole body`GO:0031617^cellular_component^NMS complex`GO:0005634^cellular_component^nucleus`GO:0005819^cellular_component^spindle`GO:0005876^cellular_component^spindle microtubule`GO:0030472^biological_process^mitotic spindle organization in nucleus`GO:0031134^biological_process^sister chromatid biorientation . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1707:comp2152_c0 comp2152_c0_seq1 sp|O13947|MTU1_SCHPO^O13947^Q:74-1318,H:1-415^100%ID^E:0^RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13947^O13947^Q:74-1318,H:1-415^100%ID^E:0^RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1341 74-1321[+] sp|A5IBN1|MNMA_LEGPC^A5IBN1^Q:33-408,H:4-359^38.46%ID^E:2e-66^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|Q5WWV9|MNMA_LEGPL^Q5WWV9^Q:33-408,H:4-359^38.36%ID^E:3e-66^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|Q5ZVQ1|MNMA_LEGPH^Q5ZVQ1^Q:33-408,H:4-359^38.36%ID^E:4e-66^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|Q5X5H6|MNMA_LEGPA^Q5X5H6^Q:33-408,H:4-359^38.46%ID^E:4e-66^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|B1YJE9|MNMA_EXIS2^B1YJE9^Q:22-406,H:2-361^37.31%ID^E:1e-65^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium UniRef90_O13947^O13947^Q:1-415,H:1-415^100%ID^E:0^RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03054.11^tRNA_Me_trans^tRNA methyl transferase^33-405^E:2.8e-136 . . COG0482^Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0005524^molecular_function^ATP binding`GO:0016783^molecular_function^sulfurtransferase activity`GO:0000049^molecular_function^tRNA binding`GO:0006400^biological_process^tRNA modification GO:0016740^molecular_function^transferase activity`GO:0008033^biological_process^tRNA processing`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1708:comp2152_c0 comp2152_c0_seq2 sp|O13947|MTU1_SCHPO^O13947^Q:74-1405,H:1-415^93.47%ID^E:0^RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13947^O13947^Q:74-1405,H:1-415^93.47%ID^E:0^RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1342 347-1408[+] sp|A5IBN1|MNMA_LEGPC^A5IBN1^Q:1-346,H:34-359^35.45%ID^E:2e-53^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|Q5WWV9|MNMA_LEGPL^Q5WWV9^Q:1-346,H:34-359^35.34%ID^E:3e-53^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|Q5ZVQ1|MNMA_LEGPH^Q5ZVQ1^Q:1-346,H:34-359^34.87%ID^E:4e-53^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|Q5X5H6|MNMA_LEGPA^Q5X5H6^Q:1-346,H:34-359^35.45%ID^E:4e-53^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella`sp|P57349|MNMA_BUCAI^P57349^Q:1-348,H:38-366^34.38%ID^E:4e-53^RecName: Full=tRNA-specific 2-thiouridylase MnmA;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera UniRef90_O13947^O13947^Q:1-353,H:63-415^100%ID^E:0^RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03054.11^tRNA_Me_trans^tRNA methyl transferase^1-343^E:1.1e-117 . . COG0482^Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0005524^molecular_function^ATP binding`GO:0016783^molecular_function^sulfurtransferase activity`GO:0000049^molecular_function^tRNA binding`GO:0006400^biological_process^tRNA modification GO:0016740^molecular_function^transferase activity`GO:0008033^biological_process^tRNA processing`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1709-comp2153_c0 comp2153_c0_seq1 sp|O60125|BAG1A_SCHPO^O60125^Q:144-722,H:1-193^100%ID^E:2e-93^RecName: Full=BAG family molecular chaperone regulator 1A;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60125^O60125^Q:144-722,H:1-193^100%ID^E:7e-92^RecName: Full=BAG family molecular chaperone regulator 1A;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1343 144-731[+] sp|Q8RX71|BAG4_ARATH^Q8RX71^Q:4-188,H:46-217^24.47%ID^E:8e-06^RecName: Full=BAG family molecular chaperone regulator 4;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_O60125^O60125^Q:1-195,H:1-195^100%ID^E:2e-108^RecName: Full=BAG family molecular chaperone regulator 1A;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00240.18^ubiquitin^Ubiquitin family^15-72^E:1.7e-06`PF02179.11^BAG^BAG domain^109-188^E:6e-19 . . . GO:0005829^cellular_component^cytosol`GO:0009409^biological_process^response to cold`GO:0009651^biological_process^response to salt stress`GO:0010228^biological_process^vegetative to reproductive phase transition of meristem GO:0005515^molecular_function^protein binding`GO:0051087^molecular_function^chaperone binding . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1725-comp2167_c0 comp2167_c0_seq1 sp|Q92357|CFR1_SCHPO^Q92357^Q:37-1896,H:1-620^100%ID^E:0^RecName: Full=Cell fusion protein cfr1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q92357^Q92357^Q:37-1896,H:1-620^100%ID^E:0^RecName: Full=Cell fusion protein cfr1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1358 1-1899[+] sp|Q12114|CHS5_YEAST^Q12114^Q:19-421,H:6-435^36.66%ID^E:6e-68^RecName: Full=Chitin biosynthesis protein CHS5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|O74161|CHS5_CANAL^O74161^Q:21-270,H:6-261^44.14%ID^E:5e-62^RecName: Full=Chitin biosynthesis protein CHS5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida UniRef90_Q92357^Q92357^Q:13-632,H:1-620^100%ID^E:0^RecName: Full=Cell fusion protein cfr1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00533.21^BRCT^BRCA1 C Terminus (BRCT) domain^183-254^E:2.7e-09`PF12738.2^PTCB-BRCT^twin BRCT domain^188-248^E:1.3e-06 . . NOG149802^HTH_XRE GO:0005737^cellular_component^cytoplasm`GO:0034044^cellular_component^exomer complex`GO:0016020^cellular_component^membrane`GO:0005515^molecular_function^protein binding`GO:0030476^biological_process^ascospore wall assembly`GO:0006039^biological_process^cell wall chitin catabolic process`GO:0000282^biological_process^cellular bud site selection`GO:0000747^biological_process^conjugation with cellular fusion`GO:0006893^biological_process^Golgi to plasma membrane transport`GO:0015031^biological_process^protein transport`GO:0006355^biological_process^regulation of transcription, DNA-templated . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1726:comp2168_c0 comp2168_c0_seq1 sp|O13705|SEC10_SCHPO^O13705^Q:3-2276,H:54-811^100%ID^E:0^RecName: Full=Exocyst complex component sec10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13705^O13705^Q:3-2276,H:54-811^100%ID^E:0^RecName: Full=Exocyst complex component sec10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1360 3-2279[+] sp|Q06245|SEC10_YEAST^Q06245^Q:2-373,H:74-455^27.32%ID^E:3e-26^RecName: Full=Exocyst complex component SEC10;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q8RVQ5|EXOC5_ARATH^Q8RVQ5^Q:7-318,H:99-426^22.87%ID^E:4e-12^RecName: Full=Exocyst complex component SEC10;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q2QV94|EXOC5_ORYSJ^Q2QV94^Q:5-716,H:74-772^19.02%ID^E:8e-11^RecName: Full=Exocyst complex component 5;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza`sp|O00471|EXOC5_HUMAN^O00471^Q:2-737,H:43-697^18.24%ID^E:1e-06^RecName: Full=Exocyst complex component 5;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P97878|EXOC5_RAT^P97878^Q:2-301,H:43-307^19%ID^E:7e-06^RecName: Full=Exocyst complex component 5;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_O13705^O13705^Q:1-758,H:54-811^100%ID^E:0^RecName: Full=Exocyst complex component sec10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF07393.6^Sec10^Exocyst complex component Sec10^49-739^E:2.1e-169 . . . GO:0000145^cellular_component^exocyst`GO:0005515^molecular_function^protein binding`GO:0006887^biological_process^exocytosis`GO:0006893^biological_process^Golgi to plasma membrane transport`GO:0015031^biological_process^protein transport`GO:0048278^biological_process^vesicle docking`GO:0090522^biological_process^vesicle tethering involved in exocytosis GO:0006887^biological_process^exocytosis`GO:0048278^biological_process^vesicle docking`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1727-comp2168_c1 comp2168_c1_seq1 sp|O13705|SEC10_SCHPO^O13705^Q:81-257,H:1-59^100%ID^E:4e-26^RecName: Full=Exocyst complex component sec10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13705^O13705^Q:81-257,H:1-59^100%ID^E:2e-24^RecName: Full=Exocyst complex component sec10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0051285^cellular_component^cell cortex of cell tip`GO:0032153^cellular_component^cell division site`GO:0051286^cellular_component^cell tip`GO:0005829^cellular_component^cytosol`GO:0000145^cellular_component^exocyst`GO:0044732^cellular_component^mitotic spindle pole body`GO:0005634^cellular_component^nucleus`GO:0005515^molecular_function^protein binding`GO:0000920^biological_process^cytokinetic cell separation`GO:0006886^biological_process^intracellular protein transport`GO:0006904^biological_process^vesicle docking involved in exocytosis . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1743-comp2183_c0 comp2183_c0_seq1 sp|Q9USN0|GPI10_SCHPO^Q9USN0^Q:1-1365,H:52-506^100%ID^E:0^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9USN0^Q9USN0^Q:1-1365,H:52-506^100%ID^E:0^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1374 1-1368[+] sp|Q6BH65|GPI10_DEBHA^Q6BH65^Q:1-455,H:92-549^29.74%ID^E:5e-48^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|Q4WPG0|GPI10_ASPFU^Q4WPG0^Q:3-452,H:106-645^27.89%ID^E:5e-47^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q1LZA0|PIGB_BOVIN^Q1LZA0^Q:3-455,H:102-534^30.08%ID^E:7e-45^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q4V7R2|PIGB_XENLA^Q4V7R2^Q:1-443,H:98-518^29.83%ID^E:9e-43^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q5AK24|GPI10_CANAL^Q5AK24^Q:1-454,H:59-481^32.15%ID^E:7e-42^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida UniRef90_Q9USN0^Q9USN0^Q:1-455,H:52-506^100%ID^E:0^RecName: Full=GPI mannosyltransferase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03901.12^Glyco_transf_22^Alg9-like mannosyltransferase family^2-363^E:1.6e-96 sigP:1^21^0.486^YES ExpAA=160.56^PredHel=5^Topology=i122-144o172-194i201-223o233-252i306-328o . GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0016757^molecular_function^transferase activity, transferring glycosyl groups`GO:0006506^biological_process^GPI anchor biosynthetic process GO:0016757^molecular_function^transferase activity, transferring glycosyl groups . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1744:comp2184_c0 comp2184_c0_seq1 sp|O74544|GTR2_SCHPO^O74544^Q:52-993,H:1-314^100%ID^E:2e-166^RecName: Full=GTP-binding protein gtr2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74544^O74544^Q:52-993,H:1-314^100%ID^E:6e-165^RecName: Full=GTP-binding protein gtr2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1375 52-996[+] sp|Q9HB90|RRAGC_HUMAN^Q9HB90^Q:2-310,H:61-367^64.1%ID^E:7e-116^RecName: Full=Ras-related GTP-binding protein C;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q9NQL2|RRAGD_HUMAN^Q9NQL2^Q:1-313,H:61-371^62.54%ID^E:1e-114^RecName: Full=Ras-related GTP-binding protein D;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P53290|GTR2_YEAST^P53290^Q:6-311,H:12-326^47.78%ID^E:8e-83^RecName: Full=GTP-binding protein GTR2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q54IK1|RRAGA_DICDI^Q54IK1^Q:3-229,H:2-230^25.11%ID^E:9e-12^RecName: Full=Ras-related GTP-binding protein A;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q00582|GTR1_YEAST^Q00582^Q:4-289,H:7-308^25.16%ID^E:2e-11^RecName: Full=GTP-binding protein GTR1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O74544^O74544^Q:1-314,H:1-314^100%ID^E:2e-180^RecName: Full=GTP-binding protein gtr2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00025.16^Arf^ADP-ribosylation factor family^4-89^E:4.2e-05`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^5-229^E:6.1e-71 . . . GO:0005737^cellular_component^cytoplasm`GO:0005764^cellular_component^lysosome`GO:0005634^cellular_component^nucleus`GO:0019003^molecular_function^GDP binding`GO:0005525^molecular_function^GTP binding`GO:0003924^molecular_function^GTPase activity`GO:0000287^molecular_function^magnesium ion binding`GO:0005515^molecular_function^protein binding`GO:0046982^molecular_function^protein heterodimerization activity`GO:0006915^biological_process^apoptotic process`GO:0016049^biological_process^cell growth`GO:0034613^biological_process^cellular protein localization`GO:0071230^biological_process^cellular response to amino acid stimulus`GO:0006184^biological_process^GTP catabolic process`GO:0008380^biological_process^RNA splicing`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0006351^biological_process^transcription, DNA-templated GO:0005525^molecular_function^GTP binding`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1745:comp2185_c0 comp2185_c0_seq1 sp|Q09929|CAF17_SCHPO^Q09929^Q:127-972,H:1-282^100%ID^E:8e-153^RecName: Full=Putative transferase caf17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09929^Q09929^Q:127-972,H:1-282^100%ID^E:2e-151^RecName: Full=Putative transferase caf17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1376 127-975[+] sp|Q2U664|CAF17_ASPOR^Q2U664^Q:27-262,H:49-321^36.1%ID^E:9e-38^RecName: Full=Putative transferase caf17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q7RYZ1|CAF17_NEUCR^Q7RYZ1^Q:27-279,H:60-347^38.36%ID^E:1e-36^RecName: Full=Putative transferase caf-17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|A1CBI9|CAF17_ASPCL^A1CBI9^Q:27-240,H:49-296^37.1%ID^E:6e-36^RecName: Full=Putative transferase caf17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q1DK38|CAF17_COCIM^Q1DK38^Q:28-280,H:48-332^37.06%ID^E:1e-35^RecName: Full=Putative transferase CAF17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; mitosporic Onygenales; Coccidioides`sp|Q6C8Y7|CAF17_YARLI^Q6C8Y7^Q:23-241,H:41-301^34.21%ID^E:2e-34^RecName: Full=Putative transferase CAF17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia UniRef90_Q09929^Q09929^Q:1-282,H:1-282^100%ID^E:5e-163^RecName: Full=Putative transferase caf17, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01571.16^GCV_T^Aminomethyltransferase folate-binding domain^27-144^E:1.5e-13 . . COG0354^Folate-binding protein involved in regulating the level of ATP-DnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication (By similarity) GO:0005739^cellular_component^mitochondrion`GO:0004047^molecular_function^aminomethyltransferase activity`GO:0006546^biological_process^glycine catabolic process GO:0004047^molecular_function^aminomethyltransferase activity`GO:0006546^biological_process^glycine catabolic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1746-comp2186_c0 comp2186_c0_seq1 . UniRef90_UPI0002556E6C^UPI0002556E6C^Q:109-2,H:39-74^80.56%ID^E:6e-13^.^.`UniRef90_UPI0002556E6C^UPI0002556E6C^Q:201-115,H:8-36^75.86%ID^E:6e-13^.^. . . . . . . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1889-comp2367_c0 comp2367_c0_seq1 . . . . . . . . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1890:comp2368_c0 comp2368_c0_seq1 sp|Q10206|DPH2_SCHPO^Q10206^Q:1-807,H:235-503^100%ID^E:6e-134^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10206^Q10206^Q:1-807,H:235-503^100%ID^E:2e-132^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1459 1-810[+] sp|A7SKJ3|DPH2_NEMVE^A7SKJ3^Q:5-258,H:293-530^39.45%ID^E:1e-45^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella`sp|Q5ZKI2|DPH2_CHICK^Q5ZKI2^Q:6-261,H:234-476^42.19%ID^E:4e-44^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|A4QN59|DPH2_DANRE^A4QN59^Q:6-261,H:247-491^40.38%ID^E:5e-42^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q6DE00|DPH2_XENLA^Q6DE00^Q:6-257,H:237-475^42.29%ID^E:1e-41^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q4WN99|DPH2_ASPFU^Q4WN99^Q:3-262,H:280-564^35.64%ID^E:2e-37^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_Q10206^Q10206^Q:1-269,H:235-503^100%ID^E:8e-156^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01866.12^Diphthamide_syn^Putative diphthamide synthesis protein^4-136^E:2.9e-36 . . COG1736^diphthamide biosynthesis protein GO:0005737^cellular_component^cytoplasm`GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1891:comp2368_c1 comp2368_c1_seq1 sp|Q10206|DPH2_SCHPO^Q10206^Q:38-754,H:1-239^100%ID^E:4e-133^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10206^Q10206^Q:38-754,H:1-239^100%ID^E:1e-131^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1460 2-757[+] sp|A4QN59|DPH2_DANRE^A4QN59^Q:23-244,H:5-241^39.08%ID^E:3e-37^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q6DE00|DPH2_XENLA^Q6DE00^Q:32-244,H:11-231^38.6%ID^E:2e-33^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q5ZKI2|DPH2_CHICK^Q5ZKI2^Q:23-244,H:5-228^36.4%ID^E:6e-32^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|A7SKJ3|DPH2_NEMVE^A7SKJ3^Q:45-245,H:40-289^34.26%ID^E:8e-29^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella`sp|Q5B2Q1|DPH2_EMENI^Q5B2Q1^Q:13-222,H:1-251^32.82%ID^E:8e-26^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_Q10206^Q10206^Q:13-251,H:1-239^100%ID^E:4e-137^RecName: Full=Diphthamide biosynthesis protein 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01866.12^Diphthamide_syn^Putative diphthamide synthesis protein^70-244^E:6.5e-34 . . COG1736^diphthamide biosynthesis protein GO:0005737^cellular_component^cytoplasm`GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1892-comp2369_c0 comp2369_c0_seq1 sp|Q10221|YAYE_SCHPO^Q10221^Q:2-646,H:131-345^100%ID^E:4e-79^RecName: Full=Uncharacterized protein C4H3.14c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10221^Q10221^Q:2-646,H:131-345^100%ID^E:1e-77^RecName: Full=Uncharacterized protein C4H3.14c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1461 2-649[+] . UniRef90_Q10221^Q10221^Q:1-215,H:131-345^100%ID^E:7e-117^RecName: Full=Uncharacterized protein C4H3.14c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1951-comp2403_c0 comp2403_c0_seq1 sp|O59713|DPH1_SCHPO^O59713^Q:120-215,H:1-32^100%ID^E:3e-11^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O59713^O59713^Q:120-215,H:1-32^100%ID^E:1e-09^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . COG1736^diphthamide biosynthesis protein GO:0005737^cellular_component^cytoplasm`GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus`GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine`GO:2000765^biological_process^regulation of cytoplasmic translation . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:1952:comp2403_c1 comp2403_c1_seq1 sp|O59713|DPH1_SCHPO^O59713^Q:3-1232,H:27-436^100%ID^E:0^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O59713^O59713^Q:3-1232,H:27-436^100%ID^E:0^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1500 3-1235[+] sp|A7SLX5|DPH1_NEMVE^A7SLX5^Q:18-404,H:44-420^60.15%ID^E:2e-137^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella`sp|Q9BZG8|DPH1_HUMAN^Q9BZG8^Q:20-408,H:31-415^58.52%ID^E:2e-134^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q6BPU5|DPH1_DEBHA^Q6BPU5^Q:6-387,H:28-409^58.96%ID^E:2e-132^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|Q54PW5|DPH1_DICDI^Q54PW5^Q:17-390,H:95-468^58.01%ID^E:2e-132^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q3SYT1|DPH1_BOVIN^Q3SYT1^Q:20-408,H:26-410^57.76%ID^E:3e-132^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos UniRef90_O59713^O59713^Q:1-410,H:27-436^100%ID^E:0^RecName: Full=Diphthamide biosynthesis protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01866.12^Diphthamide_syn^Putative diphthamide synthesis protein^70-381^E:7.4e-113 . . COG1736^diphthamide biosynthesis protein GO:0005737^cellular_component^cytoplasm`GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine GO:0017183^biological_process^peptidyl-diphthamide biosynthetic process from peptidyl-histidine`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-1953-comp2404_c0 comp2404_c0_seq1 . . . . . . . . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2005-comp2428_c2 comp2428_c2_seq1 sp|Q9USM8|ATG20_SCHPO^Q9USM8^Q:7-708,H:1-234^100%ID^E:8e-126^RecName: Full=Autophagy-related protein 20;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9USM8^Q9USM8^Q:7-708,H:1-234^100%ID^E:2e-124^RecName: Full=Autophagy-related protein 20;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1538 1-711[+] sp|Q6C9X0|SNX41_YARLI^Q6C9X0^Q:29-162,H:122-257^37.86%ID^E:8e-18^RecName: Full=Sorting nexin-41;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q5AZC9|SNX41_EMENI^Q5AZC9^Q:29-162,H:99-231^37.23%ID^E:5e-17^RecName: Full=Sorting nexin-41;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q7SB54|SNX41_NEUCR^Q7SB54^Q:29-145,H:111-227^34.19%ID^E:5e-16^RecName: Full=Sorting nexin-41;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|P0CR64|SNX41_CRYNJ^P0CR64^Q:28-145,H:86-207^38.52%ID^E:5e-16^RecName: Full=Sorting nexin-41;^Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex`sp|P0CR65|SNX41_CRYNB^P0CR65^Q:28-145,H:86-207^38.52%ID^E:6e-16^RecName: Full=Sorting nexin-41;^Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Tremellaceae; Filobasidiella; Filobasidiella/Cryptococcus neoformans species complex UniRef90_Q9USM8^Q9USM8^Q:3-236,H:1-234^100%ID^E:4e-135^RecName: Full=Autophagy-related protein 20;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00787.19^PX^PX domain^29-135^E:2.7e-20 . . COG5391^sorting nexin GO:0010008^cellular_component^endosome membrane`GO:0035091^molecular_function^phosphatidylinositol binding`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0035091^molecular_function^phosphatidylinositol binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2006:comp2429_c0 comp2429_c0_seq1 sp|Q9UUD0|YNQA_SCHPO^Q9UUD0^Q:1-1101,H:135-501^100%ID^E:0^RecName: Full=Uncharacterized protein C19C2.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUD0^Q9UUD0^Q:1-1101,H:135-501^100%ID^E:0^RecName: Full=Uncharacterized protein C19C2.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1539 1-1104[+] sp|A4FU49|SH321_HUMAN^A4FU49^Q:259-356,H:38-129^34.95%ID^E:2e-09^RecName: Full=SH3 domain-containing protein 21;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q4R729|SH321_MACFA^Q4R729^Q:259-356,H:38-129^33.98%ID^E:1e-08^RecName: Full=SH3 domain-containing protein 21;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca`sp|Q925Q9|SH3K1_RAT^Q925Q9^Q:292-348,H:103-152^42.11%ID^E:1e-08^RecName: Full=SH3 domain-containing kinase-binding protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q96B97|SH3K1_HUMAN^Q96B97^Q:292-348,H:103-152^42.11%ID^E:1e-08^RecName: Full=SH3 domain-containing kinase-binding protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|O35180|SH3G3_RAT^O35180^Q:249-348,H:241-339^34.91%ID^E:1e-07^RecName: Full=Endophilin-A3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_Q9UUD0^Q9UUD0^Q:1-367,H:135-501^100%ID^E:0^RecName: Full=Uncharacterized protein C19C2.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03114.13^BAR^BAR domain^3-94^E:1.6e-21`PF07653.12^SH3_2^Variant SH3 domain^293-350^E:1.7e-09`PF00018.23^SH3_1^SH3 domain^295-345^E:7.9e-11 . . NOG119357^Sel1 repeat . GO:0005515^molecular_function^protein binding`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2007-comp2429_c1 comp2429_c1_seq1 sp|Q9UUD0|YNQA_SCHPO^Q9UUD0^Q:2-232,H:58-134^100%ID^E:4e-38^RecName: Full=Uncharacterized protein C19C2.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUD0^Q9UUD0^Q:2-232,H:58-134^100%ID^E:2e-36^RecName: Full=Uncharacterized protein C19C2.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0032153^cellular_component^cell division site`GO:0005829^cellular_component^cytosol . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2067-comp2458_c1 comp2458_c1_seq1 sp|O13745|TFB1_SCHPO^O13745^Q:3-752,H:284-533^100%ID^E:2e-139^RecName: Full=RNA polymerase II transcription factor B subunit 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13745^O13745^Q:3-752,H:284-533^100%ID^E:7e-138^RecName: Full=RNA polymerase II transcription factor B subunit 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1579 3-755[+] . UniRef90_O13745^O13745^Q:1-250,H:284-533^100%ID^E:7e-144^RecName: Full=RNA polymerase II transcription factor B subunit 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2068:comp2459_c0 comp2459_c0_seq1 sp|Q9HFR0|CSN2_SCHPO^Q9HFR0^Q:1-588,H:242-437^100%ID^E:5e-107^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9HFR0^Q9HFR0^Q:1-588,H:242-437^100%ID^E:1e-105^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1580 1-591[+] sp|Q6IQT4|CSN2_DANRE^Q6IQT4^Q:1-176,H:240-415^51.14%ID^E:9e-52^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q8W207|CSN2_ARATH^Q8W207^Q:1-196,H:236-428^49.49%ID^E:1e-51^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q54HL6|CSN2_DICDI^Q54HL6^Q:1-180,H:244-423^51.67%ID^E:1e-51^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|P61203|CSN2_RAT^P61203^Q:1-176,H:240-415^50.57%ID^E:4e-51^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P61201|CSN2_HUMAN^P61201^Q:1-176,H:240-415^50.57%ID^E:4e-51^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q9HFR0^Q9HFR0^Q:1-196,H:242-437^100%ID^E:3e-111^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10075.4^PCI_Csn8^COP9 signalosome, subunit CSN8^39-149^E:6.3e-10`PF01399.22^PCI^PCI domain^71-173^E:1.8e-19 . . COG5159^26S proteasome non-ATPase regulatory subunit GO:0008180^cellular_component^COP9 signalosome`GO:0005737^cellular_component^cytoplasm GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2069:comp2459_c1 comp2459_c1_seq1 sp|Q9HFR0|CSN2_SCHPO^Q9HFR0^Q:1-321,H:36-142^100%ID^E:3e-57^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9HFR0^Q9HFR0^Q:1-321,H:36-142^100%ID^E:1e-55^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1581 1-324[+] sp|Q6IR75|CSN2_XENLA^Q6IR75^Q:1-107,H:35-139^48.6%ID^E:2e-23^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|P61203|CSN2_RAT^P61203^Q:1-107,H:37-141^47.66%ID^E:4e-23^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P61201|CSN2_HUMAN^P61201^Q:1-107,H:37-141^47.66%ID^E:4e-23^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q6IQT4|CSN2_DANRE^Q6IQT4^Q:1-107,H:37-141^47.66%ID^E:4e-23^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q8W207|CSN2_ARATH^Q8W207^Q:1-106,H:31-136^44.44%ID^E:2e-18^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_Q9HFR0^Q9HFR0^Q:1-107,H:36-142^100%ID^E:7e-56^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . GO:0008180^cellular_component^COP9 signalosome`GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2070-comp2459_c2 comp2459_c2_seq1 sp|Q9HFR0|CSN2_SCHPO^Q9HFR0^Q:2-331,H:138-247^100%ID^E:5e-58^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9HFR0^Q9HFR0^Q:2-331,H:138-247^100%ID^E:2e-56^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1582 2-334[+] sp|Q5B3U7|CSN2_EMENI^Q5B3U7^Q:2-110,H:143-250^54.13%ID^E:1e-29^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q7SI58|CSN2_NEUCR^Q7SI58^Q:1-110,H:140-248^49.09%ID^E:4e-27^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|Q54HL6|CSN2_DICDI^Q54HL6^Q:1-110,H:141-249^45.45%ID^E:2e-25^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q8W207|CSN2_ARATH^Q8W207^Q:1-110,H:133-241^46.36%ID^E:2e-25^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|P61203|CSN2_RAT^P61203^Q:1-110,H:137-245^47.27%ID^E:2e-24^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_Q9HFR0^Q9HFR0^Q:1-110,H:138-247^100%ID^E:1e-58^RecName: Full=COP9 signalosome complex subunit 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . COG5159^26S proteasome non-ATPase regulatory subunit GO:0008180^cellular_component^COP9 signalosome`GO:0005737^cellular_component^cytoplasm`GO:0070791^biological_process^cleistothecium development . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2199-comp2532_c0 comp2532_c0_seq1 sp|Q09857|YAF3_SCHPO^Q09857^Q:1-360,H:23-142^96.67%ID^E:5e-61^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09857^Q09857^Q:1-360,H:23-142^96.67%ID^E:2e-59^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1654 1-363[+] sp|P25386|USO1_YEAST^P25386^Q:1-120,H:19-168^35.33%ID^E:5e-17^RecName: Full=Intracellular protein transport protein USO1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P41541|USO1_BOVIN^P41541^Q:1-120,H:22-149^28.12%ID^E:6e-09^RecName: Full=General vesicular transport factor p115;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|O60763|USO1_HUMAN^O60763^Q:1-120,H:22-149^25.78%ID^E:4e-08^RecName: Full=General vesicular transport factor p115;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P41542|USO1_RAT^P41542^Q:1-120,H:22-149^27.34%ID^E:5e-08^RecName: Full=General vesicular transport factor p115;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_Q09857^Q09857^Q:1-120,H:23-142^96.67%ID^E:6e-63^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . GO:0005856^cellular_component^cytoskeleton`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0012507^cellular_component^ER to Golgi transport vesicle membrane`GO:0000139^cellular_component^Golgi membrane`GO:0042802^molecular_function^identical protein binding`GO:0008565^molecular_function^protein transporter activity`GO:0006888^biological_process^ER to Golgi vesicle-mediated transport`GO:0048211^biological_process^Golgi vesicle docking`GO:0006886^biological_process^intracellular protein transport`GO:0035493^biological_process^SNARE complex assembly`GO:0048280^biological_process^vesicle fusion with Golgi apparatus . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2200:comp2532_c1 comp2532_c1_seq1 sp|Q09857|YAF3_SCHPO^Q09857^Q:3-1397,H:125-589^100%ID^E:0^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09857^Q09857^Q:3-1397,H:125-589^100%ID^E:0^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1655 3-1400[+] sp|P25386|USO1_YEAST^P25386^Q:4-227,H:154-380^34.33%ID^E:3e-29^RecName: Full=Intracellular protein transport protein USO1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|B0F9L4|GOGC6_ARATH^B0F9L4^Q:4-190,H:138-329^33.67%ID^E:5e-20^RecName: Full=Golgin candidate 6;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|O60763|USO1_HUMAN^O60763^Q:4-462,H:135-581^25.36%ID^E:1e-15^RecName: Full=General vesicular transport factor p115;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P41541|USO1_BOVIN^P41541^Q:4-462,H:135-581^25.16%ID^E:3e-15^RecName: Full=General vesicular transport factor p115;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|P41542|USO1_RAT^P41542^Q:4-433,H:135-551^25.33%ID^E:3e-14^RecName: Full=General vesicular transport factor p115;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_Q09857^Q09857^Q:1-465,H:125-589^100%ID^E:0^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04869.9^Uso1_p115_head^Uso1 / p115 like vesicle tethering protein, head region^213-465^E:2.5e-69 . . . GO:0005856^cellular_component^cytoskeleton`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0012507^cellular_component^ER to Golgi transport vesicle membrane`GO:0000139^cellular_component^Golgi membrane`GO:0042802^molecular_function^identical protein binding`GO:0008565^molecular_function^protein transporter activity`GO:0006888^biological_process^ER to Golgi vesicle-mediated transport`GO:0048211^biological_process^Golgi vesicle docking`GO:0006886^biological_process^intracellular protein transport`GO:0035493^biological_process^SNARE complex assembly`GO:0048280^biological_process^vesicle fusion with Golgi apparatus GO:0006886^biological_process^intracellular protein transport`GO:0048280^biological_process^vesicle fusion with Golgi apparatus`GO:0000139^cellular_component^Golgi membrane`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2201-comp2533_c0 comp2533_c0_seq1 sp|Q9Y7S3|YQO4_SCHPO^Q9Y7S3^Q:33-254,H:1-74^81.08%ID^E:1e-29^RecName: Full=Uncharacterized protein C569.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_U3H0A9^U3H0A9^Q:3-275,H:368-458^100%ID^E:8e-48^RecName: Full=Uncharacterized protein SPCC1884.01;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2263-comp2561_c3 comp2561_c3_seq1 sp|O94598|SEC5_SCHPO^O94598^Q:40-687,H:1-216^100%ID^E:3e-119^RecName: Full=Exocyst complex component sec5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94598^O94598^Q:40-687,H:1-216^100%ID^E:9e-118^RecName: Full=Exocyst complex component sec5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1693 40-690[+] . UniRef90_O94598^O94598^Q:1-216,H:1-216^100%ID^E:6e-125^RecName: Full=Exocyst complex component sec5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2264:comp2562_c0 comp2562_c0_seq1 sp|O13876|YPT4_SCHPO^O13876^Q:2-667,H:13-234^100%ID^E:2e-115^RecName: Full=GTP-binding protein ypt4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13876^O13876^Q:2-667,H:13-234^100%ID^E:7e-114^RecName: Full=GTP-binding protein ypt4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1694 2-670[+] sp|P51146|RAB4B_RAT^P51146^Q:1-196,H:12-202^48.98%ID^E:6e-53^RecName: Full=Ras-related protein Rab-4B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P61018|RAB4B_HUMAN^P61018^Q:1-196,H:12-202^48.98%ID^E:1e-52^RecName: Full=Ras-related protein Rab-4B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P61017|RAB4B_CANFA^P61017^Q:1-196,H:12-202^48.98%ID^E:1e-52^RecName: Full=Ras-related protein Rab-4B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis`sp|Q68EK7|RAB4B_DANRE^Q68EK7^Q:1-198,H:12-204^47.47%ID^E:2e-51^RecName: Full=Ras-related protein Rab-4B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|P05714|RAB4A_RAT^P05714^Q:1-197,H:12-203^47.72%ID^E:2e-51^RecName: Full=Ras-related protein Rab-4A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_O13876^O13876^Q:1-222,H:13-234^100%ID^E:9e-128^RecName: Full=GTP-binding protein ypt4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00071.17^Ras^Ras family^1-164^E:1.3e-49`PF08477.8^Miro^Miro-like protein^1-117^E:3e-16`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^2-164^E:1.2e-05`PF00025.16^Arf^ADP-ribosylation factor family^4-149^E:1.3e-12 . . COG1100^GTP-binding Protein GO:0005739^cellular_component^mitochondrion`GO:0005886^cellular_component^plasma membrane`GO:0005525^molecular_function^GTP binding`GO:0015031^biological_process^protein transport`GO:0007264^biological_process^small GTPase mediated signal transduction GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0005622^cellular_component^intracellular`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2265-comp2563_c0 comp2563_c0_seq1 . . . . . . . . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2375-comp2625_c2 comp2625_c2_seq1 . . . . . . . . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2376:comp2626_c0 comp2626_c0_seq1 sp|O14141|YEW3_SCHPO^O14141^Q:95-817,H:1-241^100%ID^E:2e-136^RecName: Full=Maf-like protein C3G6.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14141^O14141^Q:95-817,H:1-241^100%ID^E:6e-135^RecName: Full=Maf-like protein C3G6.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1785 95-820[+] sp|O95671|ASML_HUMAN^O95671^Q:26-221,H:9-201^40.61%ID^E:3e-32^RecName: Full=N-acetylserotonin O-methyltransferase-like protein;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|B0K437|Y2136_THEPX^B0K437^Q:31-233,H:2-187^37.07%ID^E:2e-27^RecName: Full=Maf-like protein Teth514_2136;^Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter`sp|B0KAE1|Y1454_THEP3^B0KAE1^Q:31-233,H:2-187^37.07%ID^E:2e-27^RecName: Full=Maf-like protein Teth39_1454;^Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermoanaerobacter`sp|Q99210|YO111_YEAST^Q99210^Q:32-226,H:21-223^40.78%ID^E:3e-26^RecName: Full=Maf-like protein YOR111W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9RV24|Y1206_DEIRA^Q9RV24^Q:31-231,H:8-188^38.12%ID^E:3e-26^RecName: Full=Maf-like protein DR_1206;^Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus UniRef90_O14141^O14141^Q:1-241,H:1-241^100%ID^E:3e-140^RecName: Full=Maf-like protein C3G6.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02545.9^Maf^Maf-like protein^31-230^E:4.3e-47 . . COG0500^methyltransferase GO:0005737^cellular_component^cytoplasm`GO:0008171^molecular_function^O-methyltransferase activity GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2377-comp2626_c0 comp2626_c0_seq2 sp|O14141|YEW3_SCHPO^O14141^Q:95-238,H:1-48^100%ID^E:5e-21^RecName: Full=Maf-like protein C3G6.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14141^O14141^Q:95-238,H:1-48^100%ID^E:2e-19^RecName: Full=Maf-like protein C3G6.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . COG0424^Maf-like protein GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2483-comp2702_c1 comp2702_c1_seq1 sp|P87237|YC0C_SCHPO^P87237^Q:481-1392,H:1-304^100%ID^E:2e-177^RecName: Full=Uncharacterized RING finger protein C4G3.12c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87237^P87237^Q:481-1392,H:1-304^100%ID^E:5e-176^RecName: Full=Uncharacterized RING finger protein C4G3.12c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1880 481-1395[+] . UniRef90_P87237^P87237^Q:1-304,H:1-304^100%ID^E:2e-173^RecName: Full=Uncharacterized RING finger protein C4G3.12c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2484:comp2703_c0 comp2703_c0_seq1 sp|O60136|YNS5_SCHPO^O60136^Q:770-2527,H:1-586^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C18H10.05;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60136^O60136^Q:770-2527,H:1-586^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C18H10.05;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1881 770-2530[+] sp|Q498F0|WDR44_XENLA^Q498F0^Q:188-515,H:515-872^31.08%ID^E:2e-44^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q9XSC3|WDR44_BOVIN^Q9XSC3^Q:188-503,H:512-849^31.23%ID^E:6e-42^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q9R037|WDR44_RAT^Q9R037^Q:176-503,H:496-845^30.11%ID^E:8e-42^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q5JSH3|WDR44_HUMAN^Q5JSH3^Q:188-503,H:513-850^31.23%ID^E:9e-42^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q03177|YMZ2_YEAST^Q03177^Q:187-466,H:174-504^29.76%ID^E:9e-37^RecName: Full=WD repeat-containing protein YMR102C;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O60136^O60136^Q:1-586,H:1-586^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C18H10.05;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00400.27^WD40^WD domain, G-beta repeat^188-214^E:0.0037`PF00400.27^WD40^WD domain, G-beta repeat^246-282^E:2.1e-08`PF00400.27^WD40^WD domain, G-beta repeat^294-324^E:5.9e-07 . . . GO:0005829^cellular_component^cytosol`GO:0010008^cellular_component^endosome membrane`GO:0005794^cellular_component^Golgi apparatus`GO:0048471^cellular_component^perinuclear region of cytoplasm GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2485-comp2704_c0 comp2704_c0_seq1 sp|O13722|TAF12_SCHPO^O13722^Q:122-1471,H:1-450^100%ID^E:0^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13722^O13722^Q:122-1471,H:1-450^100%ID^E:0^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.1882 122-1474[+] sp|Q03761|TAF12_YEAST^Q03761^Q:295-445,H:368-521^48.72%ID^E:3e-39^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q91858|TAF12_XENLA^Q91858^Q:319-441,H:41-158^47.15%ID^E:8e-28^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q16514|TAF12_HUMAN^Q16514^Q:291-441,H:11-155^41.72%ID^E:3e-27^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q3T174|TAF12_BOVIN^Q3T174^Q:291-441,H:11-155^41.06%ID^E:1e-26^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q555L9|TAF12_DICDI^Q555L9^Q:342-427,H:441-526^54.65%ID^E:2e-23^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_O13722^O13722^Q:1-450,H:1-450^100%ID^E:0^RecName: Full=Transcription initiation factor TFIID subunit 12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03847.8^TFIID_20kDa^Transcription initiation factor TFIID subunit A^344-411^E:1.2e-35`PF00808.18^CBFD_NFYB_HMF^Histone-like transcription factor (CBF/NF-Y) and archaeal histone^352-403^E:2.1e-05 . . COG5624^TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor GO:0000124^cellular_component^SAGA complex`GO:0046695^cellular_component^SLIK (SAGA-like) complex`GO:0005669^cellular_component^transcription factor TFIID complex`GO:0003682^molecular_function^chromatin binding`GO:0042802^molecular_function^identical protein binding`GO:0005515^molecular_function^protein binding`GO:0032947^molecular_function^protein complex scaffold`GO:0001102^molecular_function^RNA polymerase II activating transcription factor binding`GO:0017025^molecular_function^TBP-class protein binding`GO:0016568^biological_process^chromatin modification`GO:0016573^biological_process^histone acetylation`GO:0006355^biological_process^regulation of transcription, DNA-templated`GO:0051123^biological_process^RNA polymerase II transcriptional preinitiation complex assembly`GO:0006366^biological_process^transcription from RNA polymerase II promoter GO:0006352^biological_process^DNA-templated transcription, initiation`GO:0005669^cellular_component^transcription factor TFIID complex`GO:0043565^molecular_function^sequence-specific DNA binding`GO:0005622^cellular_component^intracellular . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2645-comp2821_c0 comp2821_c0_seq1 sp|P17610|YPT3_SCHPO^P17610^Q:107-748,H:1-214^100%ID^E:2e-117^RecName: Full=GTP-binding protein ypt3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P17610^P17610^Q:107-748,H:1-214^100%ID^E:5e-116^RecName: Full=GTP-binding protein ypt3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2039 107-751[+] sp|O35509|RB11B_RAT^O35509^Q:3-214,H:4-215^68.98%ID^E:3e-82^RecName: Full=Ras-related protein Rab-11B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q15907|RB11B_HUMAN^Q15907^Q:3-214,H:4-215^68.98%ID^E:3e-82^RecName: Full=Ras-related protein Rab-11B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q3MHP2|RB11B_BOVIN^Q3MHP2^Q:3-214,H:4-215^68.98%ID^E:3e-82^RecName: Full=Ras-related protein Rab-11B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|P62494|RB11A_RAT^P62494^Q:3-214,H:4-213^69.16%ID^E:6e-82^RecName: Full=Ras-related protein Rab-11A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P62493|RB11A_RABIT^P62493^Q:3-214,H:4-213^69.16%ID^E:6e-82^RecName: Full=Ras-related protein Rab-11A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus UniRef90_P17610^P17610^Q:1-214,H:1-214^100%ID^E:5e-123^RecName: Full=GTP-binding protein ypt3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00025.16^Arf^ADP-ribosylation factor family^11-168^E:1.3e-13`PF00071.17^Ras^Ras family^12-171^E:1.8e-63`PF08477.8^Miro^Miro-like protein^12-126^E:2.7e-20`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^12-172^E:7.4e-05`PF01926.18^MMR_HSR1^50S ribosome-binding GTPase^13-119^E:3.1e-06`PF00009.22^GTP_EFTU^Elongation factor Tu GTP binding domain^36-169^E:8.2e-05 . . COG1100^GTP-binding Protein GO:0030054^cellular_component^cell junction`GO:0016023^cellular_component^cytoplasmic membrane-bounded vesicle`GO:0005739^cellular_component^mitochondrion`GO:0045335^cellular_component^phagocytic vesicle`GO:0030670^cellular_component^phagocytic vesicle membrane`GO:0055037^cellular_component^recycling endosome`GO:0055038^cellular_component^recycling endosome membrane`GO:0008021^cellular_component^synaptic vesicle`GO:0030672^cellular_component^synaptic vesicle membrane`GO:0019003^molecular_function^GDP binding`GO:0005525^molecular_function^GTP binding`GO:0003924^molecular_function^GTPase activity`GO:0006928^biological_process^cellular component movement`GO:0071468^biological_process^cellular response to acidity`GO:0045054^biological_process^constitutive secretory pathway`GO:0035773^biological_process^insulin secretion involved in cellular response to glucose stimulus`GO:0032402^biological_process^melanosome transport`GO:0001881^biological_process^receptor recycling`GO:0045055^biological_process^regulated secretory pathway`GO:0044070^biological_process^regulation of anion transport`GO:2001135^biological_process^regulation of endocytic recycling`GO:2000008^biological_process^regulation of protein localization to cell surface`GO:1990126^biological_process^retrograde transport, endosome to plasma membrane`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0033572^biological_process^transferrin transport GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0005622^cellular_component^intracellular`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm`GO:0003924^molecular_function^GTPase activity . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2646:comp2822_c0 comp2822_c0_seq1 sp|O94476|IF6_SCHPO^O94476^Q:14-745,H:1-244^100%ID^E:2e-134^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94476^O94476^Q:14-745,H:1-244^100%ID^E:7e-133^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2040 2-748[+] sp|Q59L13|IF6_CANAL^Q59L13^Q:5-248,H:1-245^79.59%ID^E:9e-115^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|Q12522|IF6_YEAST^Q12522^Q:5-248,H:1-245^77.14%ID^E:4e-112^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5ASA6|IF6_EMENI^Q5ASA6^Q:5-247,H:1-246^75.61%ID^E:2e-108^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|B8MDN4|IF6_TALSN^B8MDN4^Q:5-247,H:1-246^74.39%ID^E:2e-107^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Trichocomaceae; Talaromyces`sp|Q2UTN7|IF6_ASPOR^Q2UTN7^Q:5-247,H:1-246^73.17%ID^E:1e-106^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_O94476^O94476^Q:5-248,H:1-244^100%ID^E:2e-138^RecName: Full=Eukaryotic translation initiation factor 6;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01912.13^eIF-6^eIF-6 family^8-208^E:1.5e-83 . . COG1976^Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm GO:0005737^cellular_component^cytoplasm`GO:0005730^cellular_component^nucleolus`GO:0043023^molecular_function^ribosomal large subunit binding`GO:0043022^molecular_function^ribosome binding`GO:0003743^molecular_function^translation initiation factor activity`GO:0042256^biological_process^mature ribosome assembly`GO:0042273^biological_process^ribosomal large subunit biogenesis`GO:0000054^biological_process^ribosomal subunit export from nucleus GO:0043022^molecular_function^ribosome binding`GO:0042256^biological_process^mature ribosome assembly . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2647-comp2823_c0 comp2823_c0_seq1 sp|Q9URV4|YBL7_SCHPO^Q9URV4^Q:183-683,H:1-167^100%ID^E:7e-81^RecName: Full=Uncharacterized protein C106.07c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9URV4^Q9URV4^Q:183-683,H:1-167^100%ID^E:2e-79^RecName: Full=Uncharacterized protein C106.07c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2041 183-686[+] sp|P37293|NAT2_YEAST^P37293^Q:54-158,H:93-225^31.58%ID^E:4e-09^RecName: Full=N-terminal acetyltransferase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q9URV4^Q9URV4^Q:1-167,H:1-167^100%ID^E:9e-89^RecName: Full=Uncharacterized protein C106.07c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF06916.8^DUF1279^Protein of unknown function (DUF1279)^52-155^E:3.8e-29 . ExpAA=26.81^PredHel=1^Topology=i62-84o . GO:0005737^cellular_component^cytoplasm`GO:0004596^molecular_function^peptide alpha-N-acetyltransferase activity`GO:0017196^biological_process^N-terminal peptidyl-methionine acetylation . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2738-comp2888_c0 comp2888_c0_seq2 sp|Q10361|ETP1_SCHPO^Q10361^Q:51-1943,H:1-616^97.62%ID^E:0^RecName: Full=Electron transfer protein 1, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10361^Q10361^Q:51-1943,H:1-616^97.62%ID^E:0^RecName: Full=Electron transfer protein 1, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2139 51-1946[+] sp|P40086|COX15_YEAST^P40086^Q:95-490,H:83-471^47.75%ID^E:7e-98^RecName: Full=Cytochrome c oxidase assembly protein COX15;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9FKT8|COX15_ARATH^Q9FKT8^Q:96-450,H:97-423^43.38%ID^E:3e-67^RecName: Full=Cytochrome c oxidase assembly protein COX15;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q7KZN9|COX15_HUMAN^Q7KZN9^Q:90-464,H:57-405^41.99%ID^E:1e-65^RecName: Full=Cytochrome c oxidase assembly protein COX15 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q6N660|CTAA_RHOPA^Q6N660^Q:96-464,H:13-340^39.84%ID^E:3e-65^RecName: Full=Heme A synthase;^Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas`sp|Q1QKJ7|CTAA_NITHX^Q1QKJ7^Q:96-472,H:13-351^38.68%ID^E:3e-65^RecName: Full=Heme A synthase;^Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter UniRef90_Q10361^Q10361^Q:1-631,H:1-616^97.62%ID^E:0^RecName: Full=Electron transfer protein 1, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02628.10^COX15-CtaA^Cytochrome oxidase assembly protein^100-457^E:1.8e-100`PF00111.22^Fer2^2Fe-2S iron-sulfur cluster binding domain^524-605^E:2.1e-12 . ExpAA=156.15^PredHel=7^Topology=i100-122o179-201i213-231o253-275i312-334o381-403i416-438o COG1612^Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group (By similarity) GO:0016021^cellular_component^integral component of membrane`GO:0005743^cellular_component^mitochondrial inner membrane`GO:0016627^molecular_function^oxidoreductase activity, acting on the CH-CH group of donors`GO:0006784^biological_process^heme a biosynthetic process GO:0016627^molecular_function^oxidoreductase activity, acting on the CH-CH group of donors`GO:0006784^biological_process^heme a biosynthetic process`GO:0055114^biological_process^oxidation-reduction process`GO:0016021^cellular_component^integral component of membrane`GO:0009055^molecular_function^electron carrier activity`GO:0051536^molecular_function^iron-sulfur cluster binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2739:comp2889_c0 comp2889_c0_seq1 sp|P87027|SPG1_SCHPO^P87027^Q:66-659,H:1-198^100%ID^E:5e-109^RecName: Full=Septum-promoting GTP-binding protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87027^P87027^Q:66-659,H:1-198^100%ID^E:2e-107^RecName: Full=Septum-promoting GTP-binding protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2140 66-662[+] sp|P38987|TEM1_YEAST^P38987^Q:4-195,H:14-205^58.33%ID^E:3e-66^RecName: Full=Protein TEM1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P29687|RAB5_TOBAC^P29687^Q:1-191,H:1-180^31.12%ID^E:2e-19^RecName: Full=Ras-related protein Rab5;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana`sp|Q6GQP4|RAB31_RAT^Q6GQP4^Q:11-169,H:6-160^29.19%ID^E:1e-18^RecName: Full=Ras-related protein Rab-31;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q9UL26|RB22A_HUMAN^Q9UL26^Q:11-183,H:6-174^27.59%ID^E:1e-18^RecName: Full=Ras-related protein Rab-22A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P31583|RHN1_NICPL^P31583^Q:1-198,H:1-188^29.41%ID^E:1e-18^RecName: Full=Ras-related protein RHN1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana UniRef90_P87027^P87027^Q:1-198,H:1-198^100%ID^E:1e-113^RecName: Full=Septum-promoting GTP-binding protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00025.16^Arf^ADP-ribosylation factor family^7-159^E:2.4e-08`PF00071.17^Ras^Ras family^12-175^E:2e-34`PF08477.8^Miro^Miro-like protein^12-125^E:3.8e-22`PF00009.22^GTP_EFTU^Elongation factor Tu GTP binding domain^12-173^E:0.00012`PF05783.6^DLIC^Dynein light intermediate chain (DLIC)^13-108^E:0.098`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^15-159^E:1.2e-08 . . COG1100^GTP-binding Protein GO:0005816^cellular_component^spindle pole body`GO:0005525^molecular_function^GTP binding`GO:0003924^molecular_function^GTPase activity`GO:0005515^molecular_function^protein binding`GO:0006184^biological_process^GTP catabolic process`GO:0007067^biological_process^mitotic nuclear division`GO:0007096^biological_process^regulation of exit from mitosis`GO:0007264^biological_process^small GTPase mediated signal transduction GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0005622^cellular_component^intracellular`GO:0003924^molecular_function^GTPase activity`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2740-comp2890_c0 comp2890_c0_seq1 sp|O60062|MET2_SCHPO^O60062^Q:415-1878,H:1-488^100%ID^E:0^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60062^O60062^Q:415-1878,H:1-488^100%ID^E:0^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2141 415-1920[+] sp|Q9Y875|MET2_EMENI^Q9Y875^Q:1-488,H:1-488^55.78%ID^E:6e-148^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|P12917|MET2_ASCIM^P12917^Q:19-487,H:21-516^53%ID^E:6e-146^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Pezizomycetes; Pezizales; Ascobolaceae; Ascobolus`sp|P08465|MET2_YEAST^P08465^Q:20-488,H:19-485^51.58%ID^E:1e-131^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q06736|MET2_SACPS^Q06736^Q:20-488,H:19-485^50.32%ID^E:9e-131^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P39058|CEFG_ACRCH^P39058^Q:20-455,H:63-444^43.08%ID^E:2e-96^RecName: Full=Acetyl-CoA--deacetylcephalosporin C acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; mitosporic Hypocreales; Acremonium UniRef90_O60062^O60062^Q:1-488,H:1-488^100%ID^E:0^RecName: Full=Homoserine O-acetyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF12697.2^Abhydrolase_6^Alpha/beta hydrolase family^69-437^E:7.3e-12`PF00561.15^Abhydrolase_1^alpha/beta hydrolase fold^100-447^E:5.5e-37 . . COG2021^homoserine O-acetyltransferase GO:0005737^cellular_component^cytoplasm`GO:0004414^molecular_function^homoserine O-acetyltransferase activity`GO:0009001^molecular_function^serine O-acetyltransferase activity`GO:0006534^biological_process^cysteine metabolic process`GO:0009086^biological_process^methionine biosynthetic process`GO:0006555^biological_process^methionine metabolic process . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2758-comp2904_c0 comp2904_c0_seq1 sp|O13326|CYSD_SCHPO^O13326^Q:325-1611,H:1-429^100%ID^E:0^RecName: Full=O-acetylhomoserine (thiol)-lyase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13326^O13326^Q:325-1611,H:1-429^100%ID^E:0^RecName: Full=O-acetylhomoserine (thiol)-lyase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2160 325-1614[+] sp|P50125|CYSD_EMENI^P50125^Q:6-426,H:7-427^69.12%ID^E:1e-163^RecName: Full=O-acetylhomoserine (thiol)-lyase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q92441|MET17_KLULA^Q92441^Q:7-422,H:4-430^65.11%ID^E:3e-153^RecName: Full=Protein MET17;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|P06106|MET17_YEAST^P06106^Q:7-427,H:4-436^63.74%ID^E:1e-147^RecName: Full=Protein MET17;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P13254|MEGL_PSEPU^P13254^Q:8-429,H:10-397^33.81%ID^E:8e-66^RecName: Full=Methionine gamma-lyase;^Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas`sp|P55218|METZ_PSEAE^P55218^Q:3-426,H:14-400^37.5%ID^E:3e-65^RecName: Full=O-succinylhomoserine sulfhydrylase;^Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas UniRef90_O13326^O13326^Q:1-429,H:1-429^100%ID^E:0^RecName: Full=O-acetylhomoserine (thiol)-lyase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01053.15^Cys_Met_Meta_PP^Cys/Met metabolism PLP-dependent enzyme^9-427^E:1.4e-155`PF01041.12^DegT_DnrJ_EryC1^DegT/DnrJ/EryC1/StrS aminotransferase family^60-186^E:4.8e-15`PF01212.16^Beta_elim_lyase^Beta-eliminating lyase^62-315^E:0.00014`PF00155.16^Aminotran_1_2^Aminotransferase class I and II^66-226^E:5.9e-12`PF00266.14^Aminotran_5^Aminotransferase class-V^81-219^E:5.5e-08 . . COG2873^o-acetylhomoserine GO:0004121^molecular_function^cystathionine beta-lyase activity`GO:0004123^molecular_function^cystathionine gamma-lyase activity`GO:0003961^molecular_function^O-acetylhomoserine aminocarboxypropyltransferase activity`GO:0030170^molecular_function^pyridoxal phosphate binding`GO:0071266^biological_process^'de novo' L-methionine biosynthetic process`GO:0019343^biological_process^cysteine biosynthetic process via cystathionine`GO:0006534^biological_process^cysteine metabolic process`GO:0009086^biological_process^methionine biosynthetic process`GO:0019346^biological_process^transsulfuration GO:0030170^molecular_function^pyridoxal phosphate binding`GO:0016829^molecular_function^lyase activity`GO:0006520^biological_process^cellular amino acid metabolic process`GO:0009058^biological_process^biosynthetic process`GO:0008152^biological_process^metabolic process . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2759:comp2905_c0 comp2905_c0_seq1 sp|Q10483|YDFB_SCHPO^Q10483^Q:112-723,H:37-240^100%ID^E:1e-73^RecName: Full=Uncharacterized protein C17C9.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10483^Q10483^Q:112-723,H:37-240^100%ID^E:3e-72^RecName: Full=Uncharacterized protein C17C9.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2161 268-726[+] sp|Q6GLV4|UBX1B_XENLA^Q6GLV4^Q:3-149,H:132-286^30.32%ID^E:2e-07^RecName: Full=UBX domain-containing protein 1-B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q6IP50|UBX1A_XENLA^Q6IP50^Q:2-149,H:137-292^29.49%ID^E:1e-06^RecName: Full=UBX domain-containing protein 1-A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q6GL77|UBXN1_XENTR^Q6GL77^Q:2-149,H:128-283^29.49%ID^E:4e-06^RecName: Full=UBX domain-containing protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana UniRef90_Q10483^Q10483^Q:1-152,H:89-240^100%ID^E:7e-85^RecName: Full=Uncharacterized protein C17C9.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2760:comp2905_c0 comp2905_c0_seq2 sp|Q10483|YDFB_SCHPO^Q10483^Q:19-738,H:1-240^100%ID^E:2e-95^RecName: Full=Uncharacterized protein C17C9.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10483^Q10483^Q:19-738,H:1-240^100%ID^E:7e-94^RecName: Full=Uncharacterized protein C17C9.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2162 1-741[+] sp|Q6GLV4|UBX1B_XENLA^Q6GLV4^Q:85-243,H:120-286^29.34%ID^E:8e-08^RecName: Full=UBX domain-containing protein 1-B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q6IP50|UBX1A_XENLA^Q6IP50^Q:86-243,H:127-292^28.92%ID^E:5e-07^RecName: Full=UBX domain-containing protein 1-A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q6GL77|UBXN1_XENTR^Q6GL77^Q:85-243,H:117-283^28.74%ID^E:2e-06^RecName: Full=UBX domain-containing protein 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana UniRef90_Q10483^Q10483^Q:7-246,H:1-240^100%ID^E:2e-136^RecName: Full=Uncharacterized protein C17C9.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2761-comp2906_c0 comp2906_c0_seq1 sp|O14362|YB4H_SCHPO^O14362^Q:266-1777,H:1-504^100%ID^E:0^RecName: Full=Cell wall biosynthesis/cell cycle regulator smi1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14362^O14362^Q:266-1777,H:1-504^100%ID^E:0^RecName: Full=Cell wall biosynthesis/cell cycle regulator smi1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2163 266-1780[+] sp|P38678|GS1_NEUCR^P38678^Q:9-385,H:1-399^39.9%ID^E:2e-74^RecName: Full=Glucan synthesis regulatory protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|Q6CDX0|SMI1_YARLI^Q6CDX0^Q:6-358,H:1-410^39.9%ID^E:9e-69^RecName: Full=KNR4/SMI1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q6BJY4|SMI2_DEBHA^Q6BJY4^Q:9-319,H:3-335^35.76%ID^E:3e-51^RecName: Full=KNR4/SMI1 homolog 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|P32566|SMI1_YEAST^P32566^Q:81-342,H:46-334^34.46%ID^E:1e-38^RecName: Full=Cell wall assembly regulator SMI1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q75AQ9|SMI1_ASHGO^Q75AQ9^Q:131-363,H:69-355^34.11%ID^E:1e-37^RecName: Full=KNR4/SMI1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium UniRef90_O14362^O14362^Q:1-504,H:1-504^100%ID^E:0^RecName: Full=Cell wall biosynthesis/cell cycle regulator smi1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF09346.5^SMI1_KNR4^SMI1 / KNR4 family (SUKH-1)^153-303^E:3.7e-32 . . COG4282^Glucan synthesis regulatory protein GO:0042546^biological_process^cell wall biogenesis`GO:0006355^biological_process^regulation of transcription, DNA-templated`GO:0006351^biological_process^transcription, DNA-templated . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2848-comp2976_c0 comp2976_c0_seq1 sp|Q9UTS7|ASPG2_SCHPO^Q9UTS7^Q:32-1099,H:1-356^100%ID^E:0^RecName: Full=Probable L-asparaginase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTS7^Q9UTS7^Q:32-1099,H:1-356^100%ID^E:0^RecName: Full=Probable L-asparaginase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2257 2-1102[+] sp|P0CX79|ASP24_YEAST^P0CX79^Q:20-364,H:11-357^45.45%ID^E:7e-78^RecName: Full=L-asparaginase 2-4;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P0CX78|ASP23_YEAST^P0CX78^Q:20-364,H:11-357^45.45%ID^E:7e-78^RecName: Full=L-asparaginase 2-3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P0CX77|ASP22_YEAST^P0CX77^Q:20-364,H:11-357^45.45%ID^E:7e-78^RecName: Full=L-asparaginase 2-2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P0CZ17|ASP21_YEAST^P0CZ17^Q:20-364,H:11-357^45.45%ID^E:7e-78^RecName: Full=L-asparaginase 2-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P06608|ASPG_ERWCH^P06608^Q:45-363,H:25-345^45.99%ID^E:3e-72^RecName: Full=L-asparaginase;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Dickeya UniRef90_Q9UTS7^Q9UTS7^Q:11-366,H:1-356^100%ID^E:0^RecName: Full=Probable L-asparaginase 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00710.15^Asparaginase^Asparaginase^47-359^E:2.1e-68 . ExpAA=39.08^PredHel=2^Topology=o10-32i39-61o . GO:0030287^cellular_component^cell wall-bounded periplasmic space`GO:0005576^cellular_component^extracellular region`GO:0004067^molecular_function^asparaginase activity`GO:0006530^biological_process^asparagine catabolic process`GO:0006995^biological_process^cellular response to nitrogen starvation GO:0006520^biological_process^cellular amino acid metabolic process . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2849:comp2977_c0 comp2977_c0_seq1 sp|Q9UTK8|GMT_SCHPO^Q9UTK8^Q:20-1054,H:1-345^100%ID^E:0^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTK8^Q9UTK8^Q:20-1054,H:1-345^100%ID^E:0^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2258 2-1057[+] sp|A1CZJ3|GMT1_NEOFI^A1CZJ3^Q:14-348,H:40-380^67.54%ID^E:6e-133^RecName: Full=GDP-mannose transporter 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Neosartorya`sp|A1C9R4|GMT_ASPCL^A1C9R4^Q:14-348,H:40-379^67.54%ID^E:3e-132^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q4WTQ6|GMT_ASPFU^Q4WTQ6^Q:14-348,H:40-380^67.54%ID^E:6e-132^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|B0Y384|GMT_ASPFC^B0Y384^Q:14-348,H:40-380^67.54%ID^E:6e-132^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q0CA27|GMT_ASPTN^Q0CA27^Q:15-348,H:41-382^66.47%ID^E:4e-129^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_Q9UTK8^Q9UTK8^Q:7-351,H:1-345^100%ID^E:0^RecName: Full=GDP-mannose transporter;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF08449.6^UAA^UAA transporter family^47-320^E:2.1e-13`PF03151.11^TPT^Triose-phosphate Transporter family^175-313^E:5.3e-11 . ExpAA=207.66^PredHel=10^Topology=i13-35o50-72i85-107o111-133i138-156o171-188i205-227o242-264i271-290o294-316i COG5070^Involved in the import of GDP-mannose from the cytoplasm into the Golgi lumen GO:0030659^cellular_component^cytoplasmic vesicle membrane`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0000139^cellular_component^Golgi membrane`GO:0016021^cellular_component^integral component of membrane`GO:0005338^molecular_function^nucleotide-sugar transmembrane transporter activity`GO:0008643^biological_process^carbohydrate transport`GO:0015780^biological_process^nucleotide-sugar transport GO:0055085^biological_process^transmembrane transport . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2850-comp2978_c0 comp2978_c0_seq1 sp|Q09844|YAE3_SCHPO^Q09844^Q:512-1927,H:1-472^100%ID^E:0^RecName: Full=TBC domain-containing protein C23D3.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09844^Q09844^Q:512-1927,H:1-472^100%ID^E:0^RecName: Full=TBC domain-containing protein C23D3.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2259 512-1930[+] sp|Q9P2M4|TBC14_HUMAN^Q9P2M4^Q:136-434,H:319-627^29.68%ID^E:9e-36^RecName: Full=TBC1 domain family member 14;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|A6H7I8|TBC14_BOVIN^A6H7I8^Q:136-471,H:318-662^29.11%ID^E:2e-35^RecName: Full=TBC1 domain family member 14;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q5CD77|TBC14_RAT^Q5CD77^Q:136-434,H:320-628^29.68%ID^E:3e-35^RecName: Full=TBC1 domain family member 14;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q0IHY4|TBC12_XENTR^Q0IHY4^Q:136-441,H:310-625^28.79%ID^E:2e-32^RecName: Full=TBC1 domain family member 12;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|O60347|TBC12_HUMAN^O60347^Q:136-441,H:402-715^28.57%ID^E:8e-32^RecName: Full=TBC1 domain family member 12;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q09844^Q09844^Q:1-472,H:1-472^100%ID^E:0^RecName: Full=TBC domain-containing protein C23D3.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00566.13^RabGAP-TBC^Rab-GTPase-TBC domain^219-438^E:9.4e-36 . . COG5210^TBC1 domain family member GO:0005776^cellular_component^autophagic vacuole`GO:0005794^cellular_component^Golgi apparatus`GO:0005515^molecular_function^protein binding`GO:0019901^molecular_function^protein kinase binding`GO:0005097^molecular_function^Rab GTPase activator activity`GO:0010507^biological_process^negative regulation of autophagy`GO:2000785^biological_process^regulation of autophagic vacuole assembly GO:0005097^molecular_function^Rab GTPase activator activity`GO:0032313^biological_process^regulation of Rab GTPase activity . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2943-comp3034_c0 comp3034_c0_seq1 sp|O74764|SPB4_SCHPO^O74764^Q:719-1876,H:221-606^100%ID^E:0^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|O74764|SPB4_SCHPO^O74764^Q:60-728,H:1-223^99.55%ID^E:0^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74764^O74764^Q:719-1876,H:221-606^100%ID^E:0^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O74764^O74764^Q:60-728,H:1-223^99.55%ID^E:0^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2332 797-1879[+] sp|A6RMZ2|SPB4_BOTFB^A6RMZ2^Q:1-278,H:280-562^47.39%ID^E:6e-67^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Botryotinia`sp|A7F2S3|SPB4_SCLS1^A7F2S3^Q:11-278,H:291-561^49.28%ID^E:2e-66^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia`sp|Q6C193|SPB4_YARLI^Q6C193^Q:2-351,H:272-617^41.8%ID^E:4e-66^RecName: Full=ATP-dependent rRNA helicase SPB4;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q4P9E5|SPB4_USTMA^Q4P9E5^Q:12-353,H:350-731^36.7%ID^E:9e-64^RecName: Full=ATP-dependent rRNA helicase SPB4;^Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago`sp|Q0UP45|SPB4_PHANO^Q0UP45^Q:11-295,H:305-589^48.43%ID^E:4e-63^RecName: Full=ATP-dependent rRNA helicase SPB4;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora UniRef90_O74764^O74764^Q:1-360,H:247-606^100%ID^E:0^RecName: Full=ATP-dependent rRNA helicase spb4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00271.26^Helicase_C^Helicase conserved C-terminal domain^37-108^E:5.2e-19`PF13959.1^DUF4217^Domain of unknown function (DUF4217)^155-216^E:1.7e-22 . . COG0513^atp-dependent rna helicase GO:0005730^cellular_component^nucleolus`GO:0005524^molecular_function^ATP binding`GO:0008026^molecular_function^ATP-dependent helicase activity`GO:0003723^molecular_function^RNA binding`GO:0006364^biological_process^rRNA processing . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:2944:comp3035_c0 comp3035_c0_seq1 sp|P87118|IPYR2_SCHPO^P87118^Q:62-787,H:1-242^100%ID^E:7e-145^RecName: Full=Putative inorganic pyrophosphatase C3A12.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87118^P87118^Q:62-787,H:1-242^100%ID^E:2e-143^RecName: Full=Putative inorganic pyrophosphatase C3A12.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2334 35-790[+] sp|Q6BWA5|IPYR_DEBHA^Q6BWA5^Q:18-243,H:1-228^56.14%ID^E:3e-74^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|P13998|IPYR_KLULA^P13998^Q:18-243,H:1-228^56.58%ID^E:3e-73^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|Q9C0T9|IPYR_ZYGBA^Q9C0T9^Q:18-243,H:1-228^56.58%ID^E:3e-73^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Zygosaccharomyces`sp|P00817|IPYR_YEAST^P00817^Q:18-243,H:1-228^57.02%ID^E:4e-73^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q6FRB7|IPYR_CANGA^Q6FRB7^Q:18-243,H:1-228^57.02%ID^E:1e-72^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces UniRef90_P87118^P87118^Q:10-251,H:1-242^100%ID^E:3e-141^RecName: Full=Putative inorganic pyrophosphatase C3A12.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00719.14^Pyrophosphatase^Inorganic pyrophosphatase^60-243^E:1.4e-48 . . COG0221^Pyrophosphate phospho-hydrolase GO:0005737^cellular_component^cytoplasm`GO:0004427^molecular_function^inorganic diphosphatase activity`GO:0000287^molecular_function^magnesium ion binding`GO:0006796^biological_process^phosphate-containing compound metabolic process GO:0000287^molecular_function^magnesium ion binding`GO:0004427^molecular_function^inorganic diphosphatase activity`GO:0006796^biological_process^phosphate-containing compound metabolic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-2945-comp3036_c0 comp3036_c0_seq1 sp|Q10257|RRP8_SCHPO^Q10257^Q:1-636,H:107-318^99.06%ID^E:2e-119^RecName: Full=25S rRNA (adenine(645)-N(1))-methyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10257^Q10257^Q:1-636,H:107-318^99.06%ID^E:5e-118^RecName: Full=25S rRNA (adenine(645)-N(1))-methyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2335 1-639[+] sp|P38961|RRP8_YEAST^P38961^Q:1-194,H:131-345^48.37%ID^E:3e-49^RecName: Full=25S rRNA (adenine(645)-N(1))-methyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q54CP1|RRP8_DICDI^Q54CP1^Q:1-212,H:176-390^44.93%ID^E:5e-46^RecName: Full=Ribosomal RNA-processing protein 8;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|O43159|RRP8_HUMAN^O43159^Q:1-212,H:256-456^45.58%ID^E:1e-45^RecName: Full=Ribosomal RNA-processing protein 8;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q84JC0|RRP8_ARATH^Q84JC0^Q:1-212,H:82-287^43.12%ID^E:4e-45^RecName: Full=Ribosomal RNA-processing protein 8;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q5U4F0|RRP8_RAT^Q5U4F0^Q:1-212,H:257-457^45.12%ID^E:3e-43^RecName: Full=Ribosomal RNA-processing protein 8;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_Q10257^Q10257^Q:1-212,H:107-318^99.06%ID^E:9e-123^RecName: Full=25S rRNA (adenine(645)-N(1))-methyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05148.10^Methyltransf_8^Hypothetical methyltransferase^1-212^E:5.4e-100`PF08241.7^Methyltransf_11^Methyltransferase domain^67-146^E:7.3e-10 . . COG0500^methyltransferase GO:0000781^cellular_component^chromosome, telomeric region`GO:0005730^cellular_component^nucleolus`GO:0008168^molecular_function^methyltransferase activity`GO:0016433^molecular_function^rRNA (adenine) methyltransferase activity`GO:0042273^biological_process^ribosomal large subunit biogenesis`GO:0031167^biological_process^rRNA methylation`GO:0006364^biological_process^rRNA processing GO:0008168^molecular_function^methyltransferase activity`GO:0008152^biological_process^metabolic process . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3071-comp3099_c1 comp3099_c1_seq1 sp|P30666|MCM3_SCHPO^P30666^Q:120-1460,H:1-447^100%ID^E:0^RecName: Full=DNA replication licensing factor mcm3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P30666^P30666^Q:120-1460,H:1-447^100%ID^E:0^RecName: Full=DNA replication licensing factor mcm3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2430 120-1463[+] sp|P49739|MCM3M_XENLA^P49739^Q:18-447,H:17-436^57.64%ID^E:5e-134^RecName: Full=Maternal DNA replication licensing factor mcm3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q9SX03|MCM33_MAIZE^Q9SX03^Q:7-447,H:5-431^54.75%ID^E:4e-133^RecName: Full=DNA replication licensing factor MCM3 homolog 3;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogoneae; Zea`sp|Q9SX04|MCM32_MAIZE^Q9SX04^Q:7-447,H:5-431^54.75%ID^E:4e-133^RecName: Full=DNA replication licensing factor MCM3 homolog 2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogoneae; Zea`sp|Q43704|MCM31_MAIZE^Q43704^Q:7-447,H:5-431^54.75%ID^E:4e-133^RecName: Full=DNA replication licensing factor MCM3 homolog 1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogoneae; Zea`sp|P24279|MCM3_YEAST^P24279^Q:7-447,H:18-500^53.04%ID^E:1e-132^RecName: Full=DNA replication licensing factor MCM3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_P30666^P30666^Q:1-447,H:1-447^100%ID^E:0^RecName: Full=DNA replication licensing factor mcm3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00493.18^MCM^MCM2/3/5 family^293-447^E:8.5e-69 . . . GO:0000785^cellular_component^chromatin`GO:0042555^cellular_component^MCM complex`GO:0005634^cellular_component^nucleus`GO:0005524^molecular_function^ATP binding`GO:0003677^molecular_function^DNA binding`GO:0003678^molecular_function^DNA helicase activity`GO:0005515^molecular_function^protein binding`GO:0006200^biological_process^ATP catabolic process`GO:0007049^biological_process^cell cycle`GO:0006270^biological_process^DNA replication initiation`GO:0006268^biological_process^DNA unwinding involved in DNA replication`GO:0030174^biological_process^regulation of DNA-dependent DNA replication initiation GO:0003677^molecular_function^DNA binding`GO:0005524^molecular_function^ATP binding`GO:0006260^biological_process^DNA replication . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:3072:comp3100_c0 comp3100_c0_seq1 sp|O94644|RTC5_SCHPO^O94644^Q:3-686,H:284-511^98.25%ID^E:2e-132^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94644^O94644^Q:3-686,H:284-511^98.25%ID^E:5e-131^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2431 3-689[+] sp|B6K4Q8|RTC5_SCHJY^B6K4Q8^Q:3-215,H:281-487^33.95%ID^E:3e-30^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|E4ZUJ1|RTC5_LEPMJ^E4ZUJ1^Q:15-214,H:362-566^31.48%ID^E:5e-24^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Leptosphaeriaceae; Leptosphaeria; Leptosphaeria maculans complex`sp|E3RYW5|RTC5_PYRTT^E3RYW5^Q:15-214,H:361-565^32.41%ID^E:4e-23^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Pyrenophora`sp|B2WB15|RTC5_PYRTR^B2WB15^Q:15-214,H:359-567^31.65%ID^E:2e-22^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Pyrenophora`sp|C4R3K5|RTC5_PICPG^C4R3K5^Q:15-221,H:324-529^31.8%ID^E:6e-22^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Komagataella UniRef90_O94644^O94644^Q:1-228,H:284-511^98.25%ID^E:4e-133^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF07534.11^TLD^TLD^94-215^E:1.9e-19 . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:3073:comp3100_c1 comp3100_c1_seq1 sp|O94644|RTC5_SCHPO^O94644^Q:12-725,H:62-299^100%ID^E:5e-131^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94644^O94644^Q:12-725,H:62-299^100%ID^E:2e-129^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2432 3-731[+] sp|B6K4Q8|RTC5_SCHJY^B6K4Q8^Q:5-235,H:63-288^30.9%ID^E:4e-19^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94644^O94644^Q:4-241,H:62-299^100%ID^E:9e-136^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3074-comp3100_c2 comp3100_c2_seq1 sp|O94644|RTC5_SCHPO^O94644^Q:53-250,H:1-66^100%ID^E:6e-33^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94644^O94644^Q:53-250,H:1-66^100%ID^E:2e-31^RecName: Full=Restriction of telomere capping protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0005737^cellular_component^cytoplasm`GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3262-comp3209_c0 comp3209_c0_seq2 sp|Q0E7J7|STN1_SCHPO^Q0E7J7^Q:139-261,H:1-41^92.68%ID^E:1e-16^RecName: Full=Protein stn1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q0E7J7^Q0E7J7^Q:139-261,H:1-41^92.68%ID^E:5e-15^RecName: Full=Protein stn1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . NOG120376^Complex 1 protein (LYR family) GO:0000781^cellular_component^chromosome, telomeric region`GO:0005634^cellular_component^nucleus`GO:0070188^cellular_component^Stn1-Ten1 complex`GO:0005515^molecular_function^protein binding`GO:0043047^molecular_function^single-stranded telomeric DNA binding`GO:0016233^biological_process^telomere capping . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:3263:comp3210_c0 comp3210_c0_seq1 sp|Q9Y809|NAA25_SCHPO^Q9Y809^Q:3-2189,H:34-762^100%ID^E:0^RecName: Full=N-terminal acetyltransferase B complex subunit arm1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y809^Q9Y809^Q:3-2189,H:34-762^100%ID^E:0^RecName: Full=N-terminal acetyltransferase B complex subunit arm1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2594 3-2225[+] sp|Q6QI44|NAA25_RAT^Q6QI44^Q:1-573,H:74-689^23.85%ID^E:1e-30^RecName: Full=N-alpha-acetyltransferase 25, NatB auxiliary subunit;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q14CX7|NAA25_HUMAN^Q14CX7^Q:1-581,H:74-697^23.94%ID^E:2e-30^RecName: Full=N-alpha-acetyltransferase 25, NatB auxiliary subunit;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q17DK2|NAA25_AEDAE^Q17DK2^Q:337-569,H:427-661^27.71%ID^E:2e-10^RecName: Full=Phagocyte signaling-impaired protein;^Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia`sp|Q12387|NAA25_YEAST^Q12387^Q:49-506,H:114-546^23.47%ID^E:2e-07^RecName: Full=N-terminal acetyltransferase B complex subunit MDM20;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q7PYI4|NAA25_ANOGA^Q7PYI4^Q:50-548,H:117-646^22.28%ID^E:4e-06^RecName: Full=Phagocyte signaling-impaired protein;^Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles UniRef90_Q9Y809^Q9Y809^Q:1-740,H:34-773^100%ID^E:0^RecName: Full=N-terminal acetyltransferase B complex subunit arm1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF09797.4^NatB_MDM20^N-acetyltransferase B complex (NatB) non catalytic subunit^194-541^E:1.5e-78 . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3264-comp3211_c0 comp3211_c0_seq1 sp|Q9HGM6|YHW5_SCHPO^Q9HGM6^Q:54-1604,H:1-517^100%ID^E:0^RecName: Full=Putative transporter C543.05c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9HGM6^Q9HGM6^Q:54-1604,H:1-517^100%ID^E:0^RecName: Full=Putative transporter C543.05c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2595 54-1607[+] sp|P53838|BOR1_YEAST^P53838^Q:19-510,H:65-552^45.94%ID^E:3e-122^RecName: Full=Boron transporter 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9SSG5|BOR5_ARATH^Q9SSG5^Q:16-506,H:16-604^24.75%ID^E:2e-45^RecName: Full=Putative boron transporter 5;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q93Z13|BOR3_ARATH^Q93Z13^Q:5-506,H:2-597^23.67%ID^E:3e-42^RecName: Full=Probable boron transporter 3;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9M1P7|BOR2_ARATH^Q9M1P7^Q:16-506,H:11-598^24.37%ID^E:9e-42^RecName: Full=Probable boron transporter 2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q8VYR7|BOR1_ARATH^Q8VYR7^Q:16-506,H:11-598^22.75%ID^E:1e-38^RecName: Full=Boron transporter 1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_Q9HGM6^Q9HGM6^Q:1-517,H:1-517^100%ID^E:0^RecName: Full=Putative transporter C543.05c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00955.16^HCO3_cotransp^HCO3- transporter family^10-176^E:3.2e-36`PF00955.16^HCO3_cotransp^HCO3- transporter family^185-455^E:5.6e-23 . ExpAA=248.81^PredHel=12^Topology=i69-88o93-110i123-145o150-167i180-202o217-234i266-288o316-338i379-401o406-428i449-471o475-492i . GO:0000324^cellular_component^fungal-type vacuole`GO:0016021^cellular_component^integral component of membrane`GO:0005886^cellular_component^plasma membrane`GO:0005774^cellular_component^vacuolar membrane`GO:0080139^molecular_function^borate efflux transmembrane transporter activity`GO:0005452^molecular_function^inorganic anion exchanger activity`GO:0035445^biological_process^borate transmembrane transport`GO:0046713^biological_process^borate transport`GO:0006623^biological_process^protein targeting to vacuole GO:0006820^biological_process^anion transport`GO:0016021^cellular_component^integral component of membrane . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3383-comp3277_c0 comp3277_c0_seq1 sp|Q9Y738|MIS12_SCHPO^Q9Y738^Q:144-920,H:1-259^100%ID^E:6e-137^RecName: Full=Centromere protein mis12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y738^Q9Y738^Q:144-920,H:1-259^100%ID^E:2e-135^RecName: Full=Centromere protein mis12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2698 144-923[+] sp|P39731|MTW1_YEAST^P39731^Q:1-85,H:11-97^35.63%ID^E:2e-10^RecName: Full=Kinetochore-associated protein MTW1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q9Y738^Q9Y738^Q:1-259,H:1-259^100%ID^E:9e-150^RecName: Full=Centromere protein mis12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05859.7^Mis12^Mis12 protein^1-132^E:8.1e-37 . . . GO:0000818^cellular_component^nuclear MIS12/MIND complex`GO:0000922^cellular_component^spindle pole`GO:0005515^molecular_function^protein binding`GO:0007059^biological_process^chromosome segregation`GO:0007067^biological_process^mitotic nuclear division`GO:0034501^biological_process^protein localization to kinetochore GO:0007049^biological_process^cell cycle`GO:0007067^biological_process^mitotic nuclear division`GO:0000775^cellular_component^chromosome, centromeric region`GO:0005634^cellular_component^nucleus . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:3384:comp3278_c0 comp3278_c0_seq1 sp|O13683|YDY2_SCHPO^O13683^Q:116-3658,H:1-1181^100%ID^E:0^RecName: Full=Uncharacterized protein C11E3.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13683^O13683^Q:116-3658,H:1-1181^100%ID^E:0^RecName: Full=Uncharacterized protein C11E3.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2699 116-3706[+] sp|Q08748|YO296_YEAST^Q08748^Q:592-1194,H:613-1247^22.24%ID^E:1e-34^RecName: Full=Uncharacterized protein YOR296W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q62768|UN13A_RAT^Q62768^Q:616-838,H:1150-1341^22.75%ID^E:2e-07^RecName: Full=Protein unc-13 homolog A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q9UPW8|UN13A_HUMAN^Q9UPW8^Q:616-723,H:1137-1247^27.93%ID^E:3e-07^RecName: Full=Protein unc-13 homolog A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|O14795|UN13B_HUMAN^O14795^Q:591-815,H:1024-1223^23.05%ID^E:7e-06^RecName: Full=Protein unc-13 homolog B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O13683^O13683^Q:1-1196,H:1-1196^100%ID^E:0^RecName: Full=Uncharacterized protein C11E3.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00168.25^C2^C2 domain^809-886^E:0.0016`PF10540.4^Membr_traf_MHD^Munc13 (mammalian uncoordinated) homology domain^1014-1130^E:5.5e-30 . . . GO:0005737^cellular_component^cytoplasm GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3385-comp3278_c1 comp3278_c1_seq1 sp|O13683|YDY2_SCHPO^O13683^Q:1-144,H:1190-1237^100%ID^E:2e-20^RecName: Full=Uncharacterized protein C11E3.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13683^O13683^Q:1-144,H:1190-1237^100%ID^E:8e-19^RecName: Full=Uncharacterized protein C11E3.02c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0032153^cellular_component^cell division site`GO:0051286^cellular_component^cell tip`GO:0005829^cellular_component^cytosol . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3729-comp3516_c0 comp3516_c0_seq1 sp|B5BP47|YP53_SCHPO^B5BP47^Q:727-1728,H:234-567^100%ID^E:4e-168^RecName: Full=Uncharacterized transporter C460.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|B5BP47|YP53_SCHPO^B5BP47^Q:27-818,H:1-264^90.91%ID^E:6e-117^RecName: Full=Uncharacterized transporter C460.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_B5BP47^B5BP47^Q:727-1728,H:234-567^100%ID^E:1e-166^RecName: Full=Uncharacterized transporter C460.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_B5BP47^B5BP47^Q:27-818,H:1-264^90.91%ID^E:2e-115^RecName: Full=Uncharacterized transporter C460.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2899 1177-1731[+] sp|P38358|VBA2_YEAST^P38358^Q:10-178,H:305-472^43.53%ID^E:1e-28^RecName: Full=Vacuolar basic amino acid transporter 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_B5BP47^B5BP47^Q:1-184,H:384-567^100%ID^E:2e-100^RecName: Full=Uncharacterized transporter C460.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . ExpAA=78.59^PredHel=4^Topology=i7-29o44-63i76-98o153-170i COG0477^major facilitator Superfamily GO:0000329^cellular_component^fungal-type vacuole membrane`GO:0016021^cellular_component^integral component of membrane`GO:0015174^molecular_function^basic amino acid transmembrane transporter activity`GO:0015238^molecular_function^drug transmembrane transporter activity`GO:0015802^biological_process^basic amino acid transport`GO:0006855^biological_process^drug transmembrane transport`GO:0055085^biological_process^transmembrane transport . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:3730:comp3517_c0 comp3517_c0_seq1 sp|O13928|RHO3_SCHPO^O13928^Q:109-723,H:1-205^100%ID^E:9e-115^RecName: Full=GTP-binding protein rho3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13928^O13928^Q:109-723,H:1-205^100%ID^E:3e-113^RecName: Full=GTP-binding protein rho3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2900 109-726[+] sp|Q9HF51|RHO3_ASHGO^Q9HF51^Q:7-204,H:9-223^66.51%ID^E:8e-79^RecName: Full=GTP-binding protein RHO3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|Q00245|RHO3_YEAST^Q00245^Q:7-204,H:10-230^64.13%ID^E:1e-75^RecName: Full=GTP-binding protein RHO3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9P8J9|RHO3_SCHCO^Q9P8J9^Q:1-204,H:1-206^56.81%ID^E:1e-61^RecName: Full=GTP-binding protein Rho3;^Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Schizophyllaceae; Schizophyllum`sp|Q9C3Y4|RHOA_EMENI^Q9C3Y4^Q:12-191,H:4-187^54.89%ID^E:5e-51^RecName: Full=GTP-binding protein rhoA;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|P61589|RHOA_RAT^P61589^Q:12-204,H:4-192^52.28%ID^E:7e-51^RecName: Full=Transforming protein RhoA;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_O13928^O13928^Q:1-205,H:1-205^100%ID^E:2e-117^RecName: Full=GTP-binding protein rho3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00025.16^Arf^ADP-ribosylation factor family^14-176^E:5.5e-10`PF00071.17^Ras^Ras family^15-182^E:1.5e-54`PF08477.8^Miro^Miro-like protein^15-128^E:1.8e-17`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^15-130^E:6.4e-05 . . COG1100^GTP-binding Protein GO:0005622^cellular_component^intracellular`GO:0005886^cellular_component^plasma membrane`GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0005622^cellular_component^intracellular`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3731-comp3518_c0 comp3518_c0_seq1 . . . . . . . . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3751-comp3529_c0 comp3529_c0_seq1 sp|P87169|MAD1_SCHPO^P87169^Q:3-212,H:131-200^100%ID^E:3e-33^RecName: Full=Spindle assembly checkpoint component mad1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87169^P87169^Q:3-212,H:131-200^100%ID^E:1e-31^RecName: Full=Spindle assembly checkpoint component mad1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0000778^cellular_component^condensed nuclear chromosome kinetochore`GO:0005634^cellular_component^nucleus`GO:0005515^molecular_function^protein binding`GO:0007067^biological_process^mitotic nuclear division`GO:0007094^biological_process^mitotic spindle assembly checkpoint . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:3752:comp3530_c0 comp3530_c0_seq1 sp|Q9Y7R1|YCX4_SCHPO^Q9Y7R1^Q:1-261,H:172-258^100%ID^E:8e-46^RecName: Full=Uncharacterized protein C2H8.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7R1^Q9Y7R1^Q:1-261,H:172-258^100%ID^E:3e-44^RecName: Full=Uncharacterized protein C2H8.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-3753-comp3530_c1 comp3530_c1_seq1 sp|Q9Y7R1|YCX4_SCHPO^Q9Y7R1^Q:33-554,H:1-174^100%ID^E:8e-98^RecName: Full=Uncharacterized protein C2H8.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7R1^Q9Y7R1^Q:33-554,H:1-174^100%ID^E:2e-96^RecName: Full=Uncharacterized protein C2H8.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.2910 3-557[+] . UniRef90_Q9Y7R1^Q9Y7R1^Q:11-184,H:1-174^100%ID^E:5e-99^RecName: Full=Uncharacterized protein C2H8.04;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05347.10^Complex1_LYR^Complex 1 protein (LYR family)^26-82^E:1.3e-07`PF13232.1^Complex1_LYR_1^Complex1_LYR-like^26-85^E:4e-06 . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-4745-comp4046_c0 comp4046_c0_seq1 sp|O59700|YN43_SCHPO^O59700^Q:691-2259,H:16-538^100%ID^E:0^RecName: Full=Uncharacterized transporter C36.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O59700^O59700^Q:691-2259,H:16-538^100%ID^E:0^RecName: Full=Uncharacterized transporter C36.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3469 646-2262[+] sp|Q07824|TPO1_YEAST^Q07824^Q:68-533,H:116-581^43.5%ID^E:9e-98^RecName: Full=Polyamine transporter 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q06451|TPO3_YEAST^Q06451^Q:12-529,H:105-608^29.81%ID^E:1e-68^RecName: Full=Polyamine transporter 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P53283|TPO2_YEAST^P53283^Q:72-529,H:145-599^32.17%ID^E:3e-68^RecName: Full=Polyamine transporter 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P38776|YHK8_YEAST^P38776^Q:17-532,H:6-508^32.18%ID^E:2e-64^RecName: Full=Probable drug/proton antiporter YHK8;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q12256|TPO4_YEAST^Q12256^Q:82-533,H:77-550^31.01%ID^E:4e-58^RecName: Full=Polyamine transporter 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O59700^O59700^Q:1-538,H:1-538^100%ID^E:0^RecName: Full=Uncharacterized transporter C36.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF07690.11^MFS_1^Major Facilitator Superfamily^103-487^E:2.1e-36`PF00083.19^Sugar_tr^Sugar (and other) transporter^137-306^E:3.6e-10 . ExpAA=257.13^PredHel=11^Topology=o97-119i132-154o164-183i224-246o250-272i323-345o365-387i408-430o440-462i469-491o501-523i COG0477^major facilitator Superfamily GO:0033101^cellular_component^cellular bud membrane`GO:0000329^cellular_component^fungal-type vacuole membrane`GO:0016021^cellular_component^integral component of membrane`GO:0005886^cellular_component^plasma membrane`GO:0015297^molecular_function^antiporter activity`GO:0015606^molecular_function^spermidine transmembrane transporter activity`GO:0000297^molecular_function^spermine transmembrane transporter activity`GO:1902047^biological_process^polyamine transmembrane transport`GO:0015847^biological_process^putrescine transport`GO:0015848^biological_process^spermidine transport`GO:0000296^biological_process^spermine transport GO:0055085^biological_process^transmembrane transport`GO:0016021^cellular_component^integral component of membrane`GO:0022857^molecular_function^transmembrane transporter activity . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:4746:comp4048_c0 comp4048_c0_seq1 sp|O14224|GDIR_SCHPO^O14224^Q:170-784,H:1-205^100%ID^E:6e-116^RecName: Full=Rho GDP-dissociation inhibitor;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14224^O14224^Q:170-784,H:1-205^100%ID^E:2e-114^RecName: Full=Rho GDP-dissociation inhibitor;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3470 170-787[+] sp|Q12434|GDIR_YEAST^Q12434^Q:32-202,H:25-201^40.68%ID^E:5e-34^RecName: Full=Rho GDP-dissociation inhibitor;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5XI73|GDIR1_RAT^Q5XI73^Q:15-205,H:19-203^36.46%ID^E:4e-32^RecName: Full=Rho GDP-dissociation inhibitor 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P19803|GDIR1_BOVIN^P19803^Q:15-205,H:19-203^36.46%ID^E:5e-32^RecName: Full=Rho GDP-dissociation inhibitor 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q4R4J0|GDIR1_MACFA^Q4R4J0^Q:15-205,H:19-203^36.98%ID^E:8e-32^RecName: Full=Rho GDP-dissociation inhibitor 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca`sp|P52565|GDIR1_HUMAN^P52565^Q:15-205,H:19-203^36.98%ID^E:8e-32^RecName: Full=Rho GDP-dissociation inhibitor 1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O14224^O14224^Q:1-205,H:1-205^100%ID^E:1e-116^RecName: Full=Rho GDP-dissociation inhibitor;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02115.12^Rho_GDI^RHO protein GDP dissociation inhibitor^16-202^E:1.3e-57 . . . GO:0005935^cellular_component^cellular bud neck`GO:0005934^cellular_component^cellular bud tip`GO:0005829^cellular_component^cytosol`GO:0005096^molecular_function^GTPase activator activity`GO:0005515^molecular_function^protein binding`GO:0005094^molecular_function^Rho GDP-dissociation inhibitor activity`GO:0007015^biological_process^actin filament organization`GO:0050790^biological_process^regulation of catalytic activity`GO:0032889^biological_process^regulation of vacuole fusion, non-autophagic`GO:0007264^biological_process^small GTPase mediated signal transduction GO:0005094^molecular_function^Rho GDP-dissociation inhibitor activity`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-4747-comp4049_c0 comp4049_c0_seq1 sp|Q10236|RNH2A_SCHPO^Q10236^Q:133-564,H:1-144^100%ID^E:2e-79^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10236^Q10236^Q:133-564,H:1-144^100%ID^E:6e-78^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3471 133-567[+] sp|Q9SEZ6|RNH2A_ARATH^Q9SEZ6^Q:61-144,H:12-92^53.49%ID^E:2e-17^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9P5X8|RNH2A_NEUCR^Q9P5X8^Q:24-144,H:1-128^37.69%ID^E:4e-14^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|Q5U209|RNH2A_RAT^Q5U209^Q:58-144,H:23-107^47.19%ID^E:4e-13^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q2TBT5|RNH2A_BOVIN^Q2TBT5^Q:58-144,H:23-107^46.07%ID^E:6e-13^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|P53942|RNH2A_YEAST^P53942^Q:34-143,H:1-116^36.75%ID^E:3e-12^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q10236^Q10236^Q:1-144,H:1-144^100%ID^E:8e-80^RecName: Full=Ribonuclease H2 subunit A;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01351.13^RNase_HII^Ribonuclease HII^66-140^E:2.1e-21 . . COG0164^Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (By similarity) GO:0046872^molecular_function^metal ion binding`GO:0003723^molecular_function^RNA binding`GO:0004523^molecular_function^RNA-DNA hybrid ribonuclease activity . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-4785-comp4075_c0 comp4075_c0_seq1 sp|O94379|RM32_SCHPO^O94379^Q:290-568,H:1-93^100%ID^E:8e-39^RecName: Full=Probable 54S ribosomal protein L32, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94379^O94379^Q:290-568,H:1-93^100%ID^E:2e-37^RecName: Full=Probable 54S ribosomal protein L32, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3506 290-601[+] sp|P25348|RM32_YEAST^P25348^Q:43-97,H:67-124^46.55%ID^E:2e-06^RecName: Full=54S ribosomal protein L32, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O94379^O94379^Q:1-103,H:1-103^100%ID^E:2e-52^RecName: Full=Probable 54S ribosomal protein L32, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01783.18^Ribosomal_L32p^Ribosomal L32p protein family^48-99^E:3.6e-14 . . COG0333^50s ribosomal protein l32 GO:0005743^cellular_component^mitochondrial inner membrane`GO:0005762^cellular_component^mitochondrial large ribosomal subunit`GO:0003735^molecular_function^structural constituent of ribosome`GO:0032543^biological_process^mitochondrial translation GO:0003735^molecular_function^structural constituent of ribosome`GO:0006412^biological_process^translation`GO:0015934^cellular_component^large ribosomal subunit . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:4786:comp4076_c0 comp4076_c0_seq1 sp|O74775|SIP5_SCHPO^O74775^Q:546-2207,H:1-554^100%ID^E:0^RecName: Full=Protein sip5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74775^O74775^Q:546-2207,H:1-554^100%ID^E:0^RecName: Full=Protein sip5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3507 546-2210[+] sp|Q6FR54|SIP5_CANGA^Q6FR54^Q:9-369,H:92-464^32.84%ID^E:5e-43^RecName: Full=Protein SIP5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces`sp|A6ZMK0|SIP5_YEAS7^A6ZMK0^Q:14-367,H:90-473^28.43%ID^E:5e-41^RecName: Full=Protein SIP5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q759M1|SIP5_ASHGO^Q759M1^Q:10-376,H:81-470^31.57%ID^E:9e-41^RecName: Full=Protein SIP5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|A7TL97|SIP5_VANPO^A7TL97^Q:9-373,H:86-471^28.67%ID^E:3e-40^RecName: Full=Protein SIP5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Vanderwaltozyma`sp|P40210|SIP5_YEAST^P40210^Q:14-367,H:90-473^28.19%ID^E:4e-40^RecName: Full=Protein SIP5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O74775^O74775^Q:1-554,H:1-554^100%ID^E:0^RecName: Full=Protein sip5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:4787:comp4077_c0 comp4077_c0_seq1 sp|O14094|PPX1_SCHPO^O14094^Q:11-1162,H:1-384^100%ID^E:0^RecName: Full=Putative exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14094^O14094^Q:11-1162,H:1-384^100%ID^E:0^RecName: Full=Putative exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3509 2-1165[+] sp|P38698|PPX1_YEAST^P38698^Q:22-380,H:18-391^29.31%ID^E:8e-39^RecName: Full=Exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q86TP1|PRUNE_HUMAN^Q86TP1^Q:36-381,H:21-359^26.42%ID^E:3e-21^RecName: Full=Protein prune homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5E9Y6|PRUNE_BOVIN^Q5E9Y6^Q:36-381,H:21-359^27.27%ID^E:2e-19^RecName: Full=Protein prune homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q6AYG3|PRUNE_RAT^Q6AYG3^Q:36-381,H:21-359^27.56%ID^E:2e-19^RecName: Full=Protein prune homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_O14094^O14094^Q:4-387,H:1-384^100%ID^E:0^RecName: Full=Putative exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01368.15^DHH^DHH family^35-172^E:1.2e-14`PF02833.9^DHHA2^DHHA2 domain^237-379^E:7e-22 . . COG1227^Manganese-dependent inorganic pyrophosphatase GO:0005737^cellular_component^cytoplasm`GO:0005829^cellular_component^cytosol`GO:0005759^cellular_component^mitochondrial matrix`GO:0005886^cellular_component^plasma membrane`GO:0004309^molecular_function^exopolyphosphatase activity`GO:0030145^molecular_function^manganese ion binding`GO:0006798^biological_process^polyphosphate catabolic process GO:0016462^molecular_function^pyrophosphatase activity`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:4788:comp4077_c0 comp4077_c0_seq2 sp|O14094|PPX1_SCHPO^O14094^Q:11-1204,H:1-384^96.48%ID^E:0^RecName: Full=Putative exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14094^O14094^Q:11-1204,H:1-384^96.48%ID^E:0^RecName: Full=Putative exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3510 554-1207[+] sp|P38698|PPX1_YEAST^P38698^Q:17-210,H:186-391^25.47%ID^E:5e-11^RecName: Full=Exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q86TP1|PRUNE_HUMAN^Q86TP1^Q:23-211,H:169-359^25.91%ID^E:5e-08^RecName: Full=Protein prune homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O14094^O14094^Q:1-217,H:168-384^100%ID^E:3e-121^RecName: Full=Putative exopolyphosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF02833.9^DHHA2^DHHA2 domain^67-209^E:1.6e-22 . . COG1227^Manganese-dependent inorganic pyrophosphatase GO:0005737^cellular_component^cytoplasm`GO:0005829^cellular_component^cytosol`GO:0005759^cellular_component^mitochondrial matrix`GO:0005886^cellular_component^plasma membrane`GO:0004309^molecular_function^exopolyphosphatase activity`GO:0030145^molecular_function^manganese ion binding`GO:0006798^biological_process^polyphosphate catabolic process GO:0016462^molecular_function^pyrophosphatase activity`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-4789-comp4078_c0 comp4078_c0_seq1 sp|O14134|ELF1_SCHPO^O14134^Q:3-1970,H:402-1057^100%ID^E:0^RecName: Full=mRNA export factor elf1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14134^O14134^Q:3-1970,H:402-1057^100%ID^E:0^RecName: Full=mRNA export factor elf1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3511 3-1973[+] sp|Q08972|NEW1_YEAST^Q08972^Q:43-656,H:571-1195^60.79%ID^E:0^RecName: Full=[NU+] prion formation protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P29551|EF3_PNECA^P29551^Q:43-656,H:429-1042^45.3%ID^E:1e-149^RecName: Full=Elongation factor 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Pneumocystidomycetes; Pneumocystidaceae; Pneumocystis`sp|Q75EV6|EF3_ASHGO^Q75EV6^Q:42-623,H:429-1019^45.16%ID^E:2e-148^RecName: Full=Elongation factor 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|P25997|EF3_CANAL^P25997^Q:44-585,H:434-977^47.39%ID^E:6e-148^RecName: Full=Elongation factor 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|P53978|EF3B_YEAST^P53978^Q:1-588,H:387-975^44.96%ID^E:8e-148^RecName: Full=Elongation factor 3B;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O14134^O14134^Q:1-656,H:402-1057^100%ID^E:0^RecName: Full=mRNA export factor elf1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00005.22^ABC_tran^ABC transporter^108-190^E:3.9e-16`PF00005.22^ABC_tran^ABC transporter^332-538^E:8e-25`PF00385.19^Chromo^Chromo (CHRromatin Organisation MOdifier) domain^421-470^E:3.1e-09 . . COG0488^(ABC) transporter GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0005844^cellular_component^polysome`GO:0005524^molecular_function^ATP binding`GO:0016887^molecular_function^ATPase activity`GO:0006200^biological_process^ATP catabolic process`GO:0016973^biological_process^poly(A)+ mRNA export from nucleus`GO:0042274^biological_process^ribosomal small subunit biogenesis GO:0005524^molecular_function^ATP binding`GO:0016887^molecular_function^ATPase activity . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-4872-comp4117_c2 comp4117_c2_seq1 sp|Q9Y7Q6|SET7_SCHPO^Q9Y7Q6^Q:55-495,H:1-147^100%ID^E:1e-83^RecName: Full=SET domain-containing protein 7;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7Q6^Q9Y7Q6^Q:55-495,H:1-147^100%ID^E:3e-82^RecName: Full=SET domain-containing protein 7;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3572 55-498[+] . UniRef90_Q9Y7Q6^Q9Y7Q6^Q:1-147,H:1-147^100%ID^E:3e-82^RecName: Full=SET domain-containing protein 7;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00856.23^SET^SET domain^19-116^E:2.3e-11 . . . . GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:4873:comp4118_c0 comp4118_c0_seq1 sp|Q10253|MUG64_SCHPO^Q10253^Q:27-884,H:1-286^100%ID^E:5e-158^RecName: Full=Meiotically up-regulated gene 64 protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10253^Q10253^Q:27-884,H:1-286^100%ID^E:2e-156^RecName: Full=Meiotically up-regulated gene 64 protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3573 3-887[+] sp|P40531|GVP36_YEAST^P40531^Q:30-292,H:31-293^25.65%ID^E:8e-19^RecName: Full=Protein GVP36;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q10253^Q10253^Q:9-294,H:1-286^100%ID^E:5e-166^RecName: Full=Meiotically up-regulated gene 64 protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10455.4^BAR_2^Bin/amphiphysin/Rvs domain for vesicular trafficking^26-291^E:1.3e-84`PF03114.13^BAR^BAR domain^143-292^E:2e-06 . . . GO:0030173^cellular_component^integral component of Golgi membrane`GO:0006897^biological_process^endocytosis`GO:0030950^biological_process^establishment or maintenance of actin cytoskeleton polarity`GO:0007033^biological_process^vacuole organization GO:0005515^molecular_function^protein binding`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-4874-comp4119_c0 comp4119_c0_seq1 sp|O94461|YFFL_SCHPO^O94461^Q:270-839,H:20-209^100%ID^E:1e-97^RecName: Full=Probable phosphatase C1687.21;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94461^O94461^Q:270-839,H:20-209^100%ID^E:4e-96^RecName: Full=Probable phosphatase C1687.21;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3574 375-842[+] sp|Q12040|YO283_YEAST^Q12040^Q:1-145,H:73-217^29.61%ID^E:3e-07^RecName: Full=Broad-specificity phosphatase YOR283W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O94461^O94461^Q:1-155,H:55-209^100%ID^E:3e-86^RecName: Full=Probable phosphatase C1687.21;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00300.17^His_Phos_1^Histidine phosphatase superfamily (branch 1)^1-95^E:4.4e-10 . . COG0406^Phosphoglycerate mutase GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0016791^molecular_function^phosphatase activity`GO:0016311^biological_process^dephosphorylation . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-5226-comp4275_c1 comp4275_c1_seq1 sp|Q9US35|DSD1_SCHPO^Q9US35^Q:2-445,H:251-398^98.65%ID^E:9e-81^RecName: Full=D-serine dehydratase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9US35^Q9US35^Q:2-445,H:251-398^98.65%ID^E:3e-79^RecName: Full=D-serine dehydratase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3806 2-448[+] sp|P53095|DSD1_YEAST^P53095^Q:1-148,H:253-411^36.81%ID^E:3e-22^RecName: Full=D-serine dehydratase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|B2DFG5|DTHAD_DELSH^B2DFG5^Q:1-146,H:216-362^35.58%ID^E:4e-10^RecName: Full=D-threo-3-hydroxyaspartate dehydratase;^Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia UniRef90_Q9US35^Q9US35^Q:1-148,H:251-398^98.65%ID^E:1e-81^RecName: Full=D-serine dehydratase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF14031.1^D-ser_dehydrat^Putative serine dehydratase domain^52-148^E:3.3e-20 . . COG3616^alanine racemase domain protein GO:0008721^molecular_function^D-serine ammonia-lyase activity`GO:0070178^biological_process^D-serine metabolic process . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:5227:comp4276_c0 comp4276_c0_seq1 sp|Q6LA54|YF48_SCHPO^Q6LA54^Q:2-1918,H:295-933^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C3H5.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q6LA54^Q6LA54^Q:2-1918,H:295-933^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C3H5.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3807 2-1921[+] sp|Q9XSC3|WDR44_BOVIN^Q9XSC3^Q:24-406,H:512-904^42.04%ID^E:2e-86^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q5JSH3|WDR44_HUMAN^Q5JSH3^Q:24-406,H:513-905^40.86%ID^E:5e-84^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q9R037|WDR44_RAT^Q9R037^Q:24-341,H:508-851^45.61%ID^E:2e-83^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q498F0|WDR44_XENLA^Q498F0^Q:24-335,H:515-853^45.58%ID^E:2e-82^RecName: Full=WD repeat-containing protein 44;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q03177|YMZ2_YEAST^Q03177^Q:11-426,H:161-702^31.74%ID^E:4e-59^RecName: Full=WD repeat-containing protein YMR102C;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q6LA54^Q6LA54^Q:1-639,H:295-933^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C3H5.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00400.27^WD40^WD domain, G-beta repeat^22-49^E:4.8e-05`PF00400.27^WD40^WD domain, G-beta repeat^85-120^E:1.2e-07`PF00400.27^WD40^WD domain, G-beta repeat^131-162^E:9.1e-08`PF00400.27^WD40^WD domain, G-beta repeat^284-304^E:0.0059 . . COG2319^repeat-containing protein GO:0005829^cellular_component^cytosol`GO:0010008^cellular_component^endosome membrane`GO:0005794^cellular_component^Golgi apparatus`GO:0048471^cellular_component^perinuclear region of cytoplasm GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-5228-comp4276_c1 comp4276_c1_seq1 sp|Q6LA54|YF48_SCHPO^Q6LA54^Q:141-1040,H:1-300^100%ID^E:2e-166^RecName: Full=Uncharacterized WD repeat-containing protein C3H5.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q6LA54^Q6LA54^Q:141-1040,H:1-300^100%ID^E:7e-165^RecName: Full=Uncharacterized WD repeat-containing protein C3H5.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3808 141-1043[+] . UniRef90_Q6LA54^Q6LA54^Q:1-300,H:1-300^100%ID^E:2e-174^RecName: Full=Uncharacterized WD repeat-containing protein C3H5.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-5285-comp4302_c3 comp4302_c3_seq1 sp|Q9P3A8|CAND1_SCHPO^Q9P3A8^Q:1-234,H:644-721^100%ID^E:4e-38^RecName: Full=Cullin-associated NEDD8-dissociated protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9P3A8^Q9P3A8^Q:1-234,H:644-721^100%ID^E:2e-36^RecName: Full=Cullin-associated NEDD8-dissociated protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0031461^cellular_component^cullin-RING ubiquitin ligase complex`GO:0005634^cellular_component^nucleus`GO:0051444^biological_process^negative regulation of ubiquitin-protein transferase activity`GO:0016567^biological_process^protein ubiquitination`GO:2000434^biological_process^regulation of protein neddylation . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:5286:comp4303_c0 comp4303_c0_seq1 sp|Q9UT38|VPS16_SCHPO^Q9UT38^Q:82-1023,H:1-314^100%ID^E:0^RecName: Full=Probable vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UT38^Q9UT38^Q:82-1023,H:1-314^100%ID^E:0^RecName: Full=Probable vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3844 82-1026[+] sp|Q55C58|VPS16_DICDI^Q55C58^Q:11-285,H:5-276^25.27%ID^E:5e-17^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q9H269|VPS16_HUMAN^Q9H269^Q:12-306,H:8-304^23.47%ID^E:2e-10^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5E9L7|VPS16_BOVIN^Q5E9L7^Q:12-306,H:8-304^23.47%ID^E:1e-09^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos UniRef90_Q9UT38^Q9UT38^Q:1-314,H:1-314^100%ID^E:0^RecName: Full=Probable vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04841.8^Vps16_N^Vps16, N-terminal region^8-314^E:5e-114 . . . GO:0015629^cellular_component^actin cytoskeleton`GO:0010008^cellular_component^endosome membrane`GO:0030897^cellular_component^HOPS complex`GO:0003779^molecular_function^actin binding`GO:0006886^biological_process^intracellular protein transport`GO:0042144^biological_process^vacuole fusion, non-autophagic`GO:0016192^biological_process^vesicle-mediated transport GO:0006886^biological_process^intracellular protein transport`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:5287:comp4303_c1 comp4303_c1_seq1 sp|Q9UT38|VPS16_SCHPO^Q9UT38^Q:1-1281,H:409-835^99.77%ID^E:0^RecName: Full=Probable vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UT38^Q9UT38^Q:1-1281,H:409-835^99.77%ID^E:0^RecName: Full=Probable vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3845 1-1284[+] sp|Q55C58|VPS16_DICDI^Q55C58^Q:5-426,H:408-827^32.94%ID^E:4e-59^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q5E9L7|VPS16_BOVIN^Q5E9L7^Q:10-398,H:418-806^35.03%ID^E:1e-55^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q9H269|VPS16_HUMAN^Q9H269^Q:10-398,H:418-806^34.77%ID^E:2e-55^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q03308|VPS16_YEAST^Q03308^Q:10-397,H:379-768^25.69%ID^E:2e-27^RecName: Full=Vacuolar protein sorting-associated protein 16;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q11182|VPS16_CAEEL^Q11182^Q:15-367,H:433-792^21.07%ID^E:2e-06^RecName: Full=Vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis UniRef90_Q9UT38^Q9UT38^Q:1-427,H:409-835^99.77%ID^E:0^RecName: Full=Probable vacuolar protein sorting-associated protein 16 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04840.7^Vps16_C^Vps16, C-terminal region^105-423^E:1.2e-134 . . . GO:0015629^cellular_component^actin cytoskeleton`GO:0010008^cellular_component^endosome membrane`GO:0030897^cellular_component^HOPS complex`GO:0003779^molecular_function^actin binding`GO:0006886^biological_process^intracellular protein transport`GO:0042144^biological_process^vacuole fusion, non-autophagic`GO:0016192^biological_process^vesicle-mediated transport GO:0006886^biological_process^intracellular protein transport`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-5288-comp4305_c0 comp4305_c0_seq1 sp|Q9P7S9|YIF4_SCHPO^Q9P7S9^Q:1-561,H:8-194^100%ID^E:4e-94^RecName: Full=INO80 complex subunit 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9P7S9^Q9P7S9^Q:1-561,H:8-194^100%ID^E:1e-92^RecName: Full=INO80 complex subunit 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.3846 1-564[+] . UniRef90_Q9P7S9^Q9P7S9^Q:1-187,H:8-194^100%ID^E:3e-102^RecName: Full=INO80 complex subunit 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF08193.6^INO80_Ies4^INO80 complex subunit Ies4^1-168^E:1.1e-38 . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6299-comp4678_c0 comp4678_c0_seq1 sp|Q09924|EI2BD_SCHPO^Q09924^Q:38-1438,H:1-467^100%ID^E:0^RecName: Full=Probable translation initiation factor eIF-2B subunit delta;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09924^Q09924^Q:38-1438,H:1-467^100%ID^E:0^RecName: Full=Probable translation initiation factor eIF-2B subunit delta;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4450 2-1441[+] sp|P41111|EI2BD_RABIT^P41111^Q:8-472,H:57-517^38.83%ID^E:7e-85^RecName: Full=Translation initiation factor eIF-2B subunit delta;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus`sp|Q63186|EI2BD_RAT^Q63186^Q:27-472,H:70-518^38.96%ID^E:2e-82^RecName: Full=Translation initiation factor eIF-2B subunit delta;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q9UI10|EI2BD_HUMAN^Q9UI10^Q:131-472,H:176-517^44%ID^E:2e-81^RecName: Full=Translation initiation factor eIF-2B subunit delta;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q3T058|EI2BD_BOVIN^Q3T058^Q:65-472,H:97-518^39.77%ID^E:1e-79^RecName: Full=Translation initiation factor eIF-2B subunit delta;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q54FM3|EI2BD_DICDI^Q54FM3^Q:153-476,H:293-613^44.31%ID^E:2e-77^RecName: Full=Translation initiation factor eIF-2B subunit delta;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_Q09924^Q09924^Q:13-479,H:1-467^100%ID^E:0^RecName: Full=Probable translation initiation factor eIF-2B subunit delta;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01008.12^IF-2B^Initiation factor 2 subunit family^168-463^E:1.3e-92 . . COG1184^translation initiation factor GO:0005737^cellular_component^cytoplasm`GO:0005851^cellular_component^eukaryotic translation initiation factor 2B complex`GO:0003743^molecular_function^translation initiation factor activity`GO:0051716^biological_process^cellular response to stimulus`GO:0042552^biological_process^myelination`GO:0014003^biological_process^oligodendrocyte development`GO:0001541^biological_process^ovarian follicle development`GO:0043087^biological_process^regulation of GTPase activity`GO:0006413^biological_process^translational initiation GO:0044237^biological_process^cellular metabolic process . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6300:comp4679_c0 comp4679_c0_seq1 sp|O14118|YEZ3_SCHPO^O14118^Q:3-461,H:50-202^100%ID^E:1e-84^RecName: Full=Uncharacterized protein C3A11.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14118^O14118^Q:3-461,H:50-202^100%ID^E:4e-83^RecName: Full=Uncharacterized protein C3A11.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4451 3-464[+] sp|P47163|YJ99_YEAST^P47163^Q:35-152,H:90-236^30.61%ID^E:5e-09^RecName: Full=Uncharacterized protein YJR129C;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|A6QP81|MT21C_BOVIN^A6QP81^Q:62-150,H:69-166^35.35%ID^E:6e-07^RecName: Full=Protein-lysine methyltransferase METTL21C;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q5VZV1|MT21C_HUMAN^Q5VZV1^Q:48-152,H:70-175^32.74%ID^E:2e-06^RecName: Full=Protein-lysine methyltransferase METTL21C;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|A6LJG3|PRMA_THEM4^A6LJG3^Q:14-152,H:58-192^26.76%ID^E:6e-06^RecName: Full=Ribosomal protein L11 methyltransferase;^Bacteria; Thermotogae; Thermotogales; Thermotogaceae; Thermosipho`sp|Q96AZ1|MT21B_HUMAN^Q96AZ1^Q:71-152,H:52-136^36.05%ID^E:8e-06^RecName: Full=Protein-lysine methyltransferase METTL21B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O14118^O14118^Q:1-153,H:50-202^100%ID^E:1e-85^RecName: Full=Uncharacterized protein C3A11.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10294.4^Methyltransf_16^Putative methyltransferase^70-150^E:2.7e-11`PF05175.9^MTS^Methyltransferase small domain^82-144^E:7.8e-05`PF06325.8^PrmA^Ribosomal protein L11 methyltransferase (PrmA)^88-144^E:8.9e-06 . . . GO:0005737^cellular_component^cytoplasm`GO:0008757^molecular_function^S-adenosylmethionine-dependent methyltransferase activity`GO:0032259^biological_process^methylation GO:0008168^molecular_function^methyltransferase activity`GO:0008276^molecular_function^protein methyltransferase activity`GO:0006479^biological_process^protein methylation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6301-comp4680_c0 comp4680_c0_seq1 sp|O60145|PPK23_SCHPO^O60145^Q:95-1141,H:50-398^100%ID^E:0^RecName: Full=Serine/threonine-protein kinase ppk23;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60145^O60145^Q:95-1141,H:50-398^100%ID^E:0^RecName: Full=Serine/threonine-protein kinase ppk23;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4452 122-1144[+] sp|Q6K5F8|CDKG1_ORYSJ^Q6K5F8^Q:7-318,H:340-657^51.88%ID^E:6e-92^RecName: Full=Cyclin-dependent kinase G-1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza`sp|A2X6X1|CDKG1_ORYSI^A2X6X1^Q:7-318,H:340-657^51.88%ID^E:7e-92^RecName: Full=Cyclin-dependent kinase G-1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza`sp|Q54RB2|CDK11_DICDI^Q54RB2^Q:9-321,H:45-356^49.52%ID^E:5e-91^RecName: Full=Cyclin-dependent kinase 11;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|P21127|CD11B_HUMAN^P21127^Q:5-321,H:427-743^48.26%ID^E:8e-91^RecName: Full=Cyclin-dependent kinase 11B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q7XUF4|CDKG2_ORYSJ^Q7XUF4^Q:7-318,H:356-673^50.62%ID^E:3e-90^RecName: Full=Cyclin-dependent kinase G-2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza UniRef90_O60145^O60145^Q:1-340,H:59-398^100%ID^E:0^RecName: Full=Serine/threonine-protein kinase ppk23;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00069.20^Pkinase^Protein kinase domain^16-301^E:1.4e-68`PF07714.12^Pkinase_Tyr^Protein tyrosine kinase^18-213^E:1.3e-28 . . COG0515^Serine Threonine protein kinase GO:0005829^cellular_component^cytosol`GO:0005524^molecular_function^ATP binding`GO:0004693^molecular_function^cyclin-dependent protein serine/threonine kinase activity`GO:0008353^molecular_function^RNA polymerase II carboxy-terminal domain kinase activity GO:0004672^molecular_function^protein kinase activity`GO:0005524^molecular_function^ATP binding`GO:0006468^biological_process^protein phosphorylation . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6431-comp4733_c0 comp4733_c0_seq1 sp|O74970|PRP39_SCHPO^O74970^Q:38-1873,H:1-612^100%ID^E:0^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74970^O74970^Q:38-1873,H:1-612^100%ID^E:0^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4552 2-1876[+] sp|Q86UA1|PRP39_HUMAN^Q86UA1^Q:25-485,H:80-537^32%ID^E:4e-63^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q1JPZ7|PRP39_DANRE^Q1JPZ7^Q:24-466,H:150-593^31.47%ID^E:1e-62^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q4KLU2|PRP39_XENLA^Q4KLU2^Q:25-468,H:55-490^33.55%ID^E:1e-60^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|P39682|PRP39_YEAST^P39682^Q:69-554,H:73-537^23.48%ID^E:5e-33^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q03776|PRP42_YEAST^Q03776^Q:33-345,H:20-327^21.98%ID^E:1e-18^RecName: Full=U1 small nuclear ribonucleoprotein component PRP42;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O74970^O74970^Q:13-624,H:1-612^100%ID^E:0^RecName: Full=Pre-mRNA-processing factor 39;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . COG5107^cleavage stimulation factor, 3 pre-RNA, subunit 3, 77kDa GO:0005634^cellular_component^nucleus`GO:0006397^biological_process^mRNA processing`GO:0008380^biological_process^RNA splicing . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6432:comp4733_c1 comp4733_c1_seq1 sp|O74971|ATG5_SCHPO^O74971^Q:362-1060,H:29-261^98.28%ID^E:5e-132^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74971^O74971^Q:362-1060,H:29-261^98.28%ID^E:2e-130^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O74971^O74971^Q:298-426,H:1-40^69.77%ID^E:1e-07^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4553 302-1063[+] sp|Q0UXN8|ATG5_PHANO^Q0UXN8^Q:29-251,H:44-308^30.45%ID^E:9e-33^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora`sp|Q2UBM1|ATG5_ASPOR^Q2UBM1^Q:29-250,H:44-318^28.36%ID^E:3e-26^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|A7KAL6|ATG5_PENCW^A7KAL6^Q:29-250,H:44-313^29.63%ID^E:5e-26^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium chrysogenum complex`sp|Q0CRF3|ATG5_ASPTN^Q0CRF3^Q:29-250,H:44-311^27.61%ID^E:1e-25^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q4WNA5|ATG5_ASPFU^Q4WNA5^Q:29-250,H:50-322^29.3%ID^E:2e-25^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_O74971^O74971^Q:21-253,H:29-261^98.28%ID^E:7e-131^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04106.7^APG5^Autophagy protein Apg5^65-252^E:2.4e-50 . . . GO:0034045^cellular_component^pre-autophagosomal structure membrane`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0006914^biological_process^autophagy`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6433:comp4733_c1 comp4733_c1_seq2 sp|O74971|ATG5_SCHPO^O74971^Q:308-1006,H:29-261^98.28%ID^E:5e-132^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74971^O74971^Q:308-1006,H:29-261^98.28%ID^E:2e-130^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O74971^O74971^Q:244-372,H:1-40^69.77%ID^E:1e-07^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4554 248-1009[+] sp|Q0UXN8|ATG5_PHANO^Q0UXN8^Q:29-251,H:44-308^30.45%ID^E:9e-33^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora`sp|Q2UBM1|ATG5_ASPOR^Q2UBM1^Q:29-250,H:44-318^28.36%ID^E:3e-26^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|A7KAL6|ATG5_PENCW^A7KAL6^Q:29-250,H:44-313^29.63%ID^E:5e-26^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium chrysogenum complex`sp|Q0CRF3|ATG5_ASPTN^Q0CRF3^Q:29-250,H:44-311^27.61%ID^E:1e-25^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q4WNA5|ATG5_ASPFU^Q4WNA5^Q:29-250,H:50-322^29.3%ID^E:2e-25^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_O74971^O74971^Q:21-253,H:29-261^98.28%ID^E:7e-131^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04106.7^APG5^Autophagy protein Apg5^65-252^E:2.4e-50 . . . GO:0034045^cellular_component^pre-autophagosomal structure membrane`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0006914^biological_process^autophagy`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6434:comp4733_c1 comp4733_c1_seq3 sp|O74971|ATG5_SCHPO^O74971^Q:298-1080,H:1-261^100%ID^E:3e-152^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74971^O74971^Q:298-1080,H:1-261^100%ID^E:9e-151^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4555 298-1083[+] sp|Q0UXN8|ATG5_PHANO^Q0UXN8^Q:1-259,H:1-308^29.77%ID^E:6e-36^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora`sp|A7KAL6|ATG5_PENCW^A7KAL6^Q:8-258,H:8-313^28.76%ID^E:1e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium chrysogenum complex`sp|Q2UBM1|ATG5_ASPOR^Q2UBM1^Q:1-258,H:1-318^26.73%ID^E:2e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|A5DCZ3|ATG5_PICGU^A5DCZ3^Q:14-259,H:11-257^33.08%ID^E:6e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Meyerozyma`sp|Q0CRF3|ATG5_ASPTN^Q0CRF3^Q:9-258,H:9-311^27.06%ID^E:7e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_O74971^O74971^Q:1-261,H:1-261^100%ID^E:3e-150^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04106.7^APG5^Autophagy protein Apg5^73-260^E:2.7e-50 . . . GO:0034045^cellular_component^pre-autophagosomal structure membrane`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0006914^biological_process^autophagy`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6435:comp4733_c1 comp4733_c1_seq4 sp|O74971|ATG5_SCHPO^O74971^Q:244-1026,H:1-261^100%ID^E:3e-152^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74971^O74971^Q:244-1026,H:1-261^100%ID^E:8e-151^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4556 244-1029[+] sp|Q0UXN8|ATG5_PHANO^Q0UXN8^Q:1-259,H:1-308^29.77%ID^E:6e-36^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora`sp|A7KAL6|ATG5_PENCW^A7KAL6^Q:8-258,H:8-313^28.76%ID^E:1e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium; Penicillium chrysogenum complex`sp|Q2UBM1|ATG5_ASPOR^Q2UBM1^Q:1-258,H:1-318^26.73%ID^E:2e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|A5DCZ3|ATG5_PICGU^A5DCZ3^Q:14-259,H:11-257^33.08%ID^E:6e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Meyerozyma`sp|Q0CRF3|ATG5_ASPTN^Q0CRF3^Q:9-258,H:9-311^27.06%ID^E:7e-27^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus UniRef90_O74971^O74971^Q:1-261,H:1-261^100%ID^E:3e-150^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04106.7^APG5^Autophagy protein Apg5^73-260^E:2.7e-50 . . . GO:0034045^cellular_component^pre-autophagosomal structure membrane`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0006914^biological_process^autophagy`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6436:comp4733_c1 comp4733_c1_seq5 sp|O74971|ATG5_SCHPO^O74971^Q:109-792,H:34-261^100%ID^E:4e-132^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74971^O74971^Q:109-792,H:34-261^100%ID^E:1e-130^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4557 352-795[+] sp|Q0UXN8|ATG5_PHANO^Q0UXN8^Q:11-145,H:154-308^30.77%ID^E:8e-18^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Phaeosphaeriaceae; Parastagonospora`sp|Q6C4Q6|ATG5_YARLI^Q6C4Q6^Q:3-147,H:100-255^30.77%ID^E:4e-16^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|A7EJG6|ATG5_SCLS1^A7EJG6^Q:11-145,H:92-263^28.49%ID^E:6e-16^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia`sp|Q75BY9|ATG5_ASHGO^Q75BY9^Q:4-142,H:137-280^32.65%ID^E:6e-16^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|Q2HGZ8|ATG5_CHAGB^Q2HGZ8^Q:11-140,H:123-271^30.46%ID^E:1e-15^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Chaetomium UniRef90_O74971^O74971^Q:1-147,H:115-261^100%ID^E:2e-80^RecName: Full=Autophagy protein 5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04106.7^APG5^Autophagy protein Apg5^2-146^E:4.1e-36 . . . GO:0034045^cellular_component^pre-autophagosomal structure membrane`GO:0006914^biological_process^autophagy`GO:0015031^biological_process^protein transport GO:0006914^biological_process^autophagy`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6437-comp4734_c0 comp4734_c0_seq1 . . . . . . . . . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6488-comp4752_c0 comp4752_c0_seq1 sp|O13755|FRDS_SCHPO^O13755^Q:31-1542,H:1-504^100%ID^E:0^RecName: Full=Putative fumarate reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13755^O13755^Q:31-1542,H:1-504^100%ID^E:0^RecName: Full=Putative fumarate reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4585 1-1572[+] sp|P21375|OSM1_YEAST^P21375^Q:51-501,H:37-493^41.2%ID^E:1e-83^RecName: Full=Osmotic growth protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P32614|FRDS_YEAST^P32614^Q:52-503,H:7-463^37.79%ID^E:2e-81^RecName: Full=Fumarate reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9Z4P0|FRD2_SHEFN^Q9Z4P0^Q:10-512,H:98-588^31.72%ID^E:8e-61^RecName: Full=Fumarate reductase flavoprotein subunit;^Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella`sp|P83223|FRDA_SHEON^P83223^Q:69-506,H:171-590^33.56%ID^E:7e-53^RecName: Full=Fumarate reductase flavoprotein subunit;^Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella`sp|Q07WU7|FRDA_SHEFN^Q07WU7^Q:61-506,H:164-590^29.07%ID^E:9e-45^RecName: Full=Fumarate reductase flavoprotein subunit;^Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella UniRef90_O13755^O13755^Q:11-523,H:1-513^100%ID^E:0^RecName: Full=Putative fumarate reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00890.19^FAD_binding_2^FAD binding domain^51-491^E:2.4e-75`PF13450.1^NAD_binding_8^NAD(P)-binding Rossmann-like domain^53-87^E:2.1e-05 . . COG1053^Succinate DeHydrogenase GO:0005739^cellular_component^mitochondrion`GO:0016156^molecular_function^fumarate reductase (NADH) activity`GO:0000104^molecular_function^succinate dehydrogenase activity`GO:0071454^biological_process^cellular response to anoxia . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6489:comp4753_c0 comp4753_c0_seq1 sp|Q09874|YAGB_SCHPO^Q09874^Q:353-1306,H:48-365^97.8%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|Q09874|YAGB_SCHPO^Q09874^Q:127-294,H:1-56^98.21%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09874^Q09874^Q:353-1306,H:48-365^97.8%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_Q09874^Q09874^Q:127-294,H:1-56^98.21%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4586 563-1309[+] sp|Q08930|YP191_YEAST^Q08930^Q:1-231,H:94-326^27.56%ID^E:9e-10^RecName: Full=Uncharacterized protein YPL191C;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P53155|YGI2_YEAST^P53155^Q:4-232,H:97-343^24.23%ID^E:1e-07^RecName: Full=Uncharacterized protein YGL082W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q2KJ22|FA63A_BOVIN^Q2KJ22^Q:14-180,H:217-364^27.81%ID^E:2e-07^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|A3KQS4|FA63A_DANRE^A3KQS4^Q:4-180,H:259-416^29.05%ID^E:3e-07^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q2KI23|FA63B_BOVIN^Q2KI23^Q:1-180,H:334-494^30.27%ID^E:6e-07^RecName: Full=Protein FAM63B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos UniRef90_Q09874^Q09874^Q:1-248,H:118-365^100%ID^E:4e-146^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04424.8^DUF544^Protein of unknown function (DUF544)^1-59^E:9.5e-15 . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6490-comp4753_c0 comp4753_c0_seq2 sp|Q09874|YAGB_SCHPO^Q09874^Q:127-1221,H:1-365^100%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09874^Q09874^Q:127-1221,H:1-365^100%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4587 127-1224[+] sp|Q2KJ22|FA63A_BOVIN^Q2KJ22^Q:50-297,H:128-364^30.27%ID^E:1e-18^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|A3KQS4|FA63A_DANRE^A3KQS4^Q:37-297,H:167-416^29.2%ID^E:4e-17^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q5R7G8|FA63A_PONAB^Q5R7G8^Q:30-297,H:114-364^28.11%ID^E:6e-17^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo`sp|Q8N5J2|FA63A_HUMAN^Q8N5J2^Q:50-297,H:128-364^29.5%ID^E:9e-17^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5BJQ2|FA63A_RAT^Q5BJQ2^Q:30-297,H:128-378^28.83%ID^E:2e-16^RecName: Full=Protein FAM63A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_Q09874^Q09874^Q:1-365,H:1-365^100%ID^E:0^RecName: Full=Uncharacterized protein C12G12.11c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04424.8^DUF544^Protein of unknown function (DUF544)^66-176^E:1.7e-28 . . . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6719-comp4840_c2 comp4840_c2_seq1 sp|Q1MTR1|IRC3_SCHPO^Q1MTR1^Q:123-1760,H:61-606^100%ID^E:0^RecName: Full=Putative mitochondrial ATP-dependent helicase irc3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q1MTR1^Q1MTR1^Q:123-1760,H:61-606^100%ID^E:0^RecName: Full=Putative mitochondrial ATP-dependent helicase irc3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4753 270-1763[+] sp|Q06683|IRC3_YEAST^Q06683^Q:5-286,H:125-407^40.77%ID^E:1e-50^RecName: Full=Putative ATP-dependent helicase IRC3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P33919|YEJH_ECOLI^P33919^Q:32-262,H:110-356^32.81%ID^E:1e-26^RecName: Full=Uncharacterized protein YejH;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia`sp|P24125|V51K_BPL79^P24125^Q:35-261,H:75-292^26.72%ID^E:3e-13^RecName: Full=51.5 kDa protein;^Viruses; unclassified phages`sp|Q914K8|Y022_SIFVH^Q914K8^Q:32-261,H:293-528^28.51%ID^E:3e-09^RecName: Full=Putative helicase 22;^Viruses; dsDNA viruses, no RNA stage; Lipothrixviridae; Betalipothrixvirus`sp|Q58083|H669_METJA^Q58083^Q:160-249,H:242-331^28.89%ID^E:4e-06^RecName: Full=Probable ATP-dependent RNA helicase MJ0669;^Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus UniRef90_Q1MTR1^Q1MTR1^Q:1-497,H:110-606^100%ID^E:0^RecName: Full=Putative mitochondrial ATP-dependent helicase irc3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04851.10^ResIII^Type III restriction enzyme, res subunit^25-76^E:3.3e-05`PF00271.26^Helicase_C^Helicase conserved C-terminal domain^176-249^E:1.6e-13 . . COG1061^type iii restriction protein res subunit GO:0005739^cellular_component^mitochondrion`GO:0005524^molecular_function^ATP binding`GO:0004004^molecular_function^ATP-dependent RNA helicase activity`GO:0003677^molecular_function^DNA binding`GO:0006200^biological_process^ATP catabolic process GO:0003677^molecular_function^DNA binding`GO:0005524^molecular_function^ATP binding`GO:0016787^molecular_function^hydrolase activity . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6720:comp4841_c0 comp4841_c0_seq1 sp|O42662|MTT16_SCHPO^O42662^Q:116-1171,H:11-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O42662^O42662^Q:116-1171,H:11-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4754 2-1174[+] sp|Q6DC64|MET16_DANRE^Q6DC64^Q:24-282,H:19-284^38.6%ID^E:5e-48^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q86W50|MET16_HUMAN^Q86W50^Q:6-282,H:3-289^37.46%ID^E:6e-48^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5ZIA0|MET16_CHICK^Q5ZIA0^Q:24-282,H:19-289^38.18%ID^E:1e-46^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q6GR37|MET16_XENLA^Q6GR37^Q:24-334,H:19-353^34.62%ID^E:1e-45^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q61J97|MET16_CAEBR^Q61J97^Q:24-358,H:19-365^32.15%ID^E:1e-41^RecName: Full=Methyltransferase-like protein 16 homolog;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis UniRef90_O42662^O42662^Q:39-390,H:11-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05971.7^Methyltransf_10^Protein of unknown function (DUF890)^23-283^E:3.2e-62`PF06325.8^PrmA^Ribosomal protein L11 methyltransferase (PrmA)^103-183^E:0.00027`PF05175.9^MTS^Methyltransferase small domain^107-191^E:0.0001 . . COG3129^Specifically methylates the adenine in position 1618 of 23S rRNA (By similarity) GO:0008168^molecular_function^methyltransferase activity GO:0008168^molecular_function^methyltransferase activity`GO:0008276^molecular_function^protein methyltransferase activity`GO:0006479^biological_process^protein methylation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6721:comp4841_c0 comp4841_c0_seq2 sp|O42662|MTT16_SCHPO^O42662^Q:244-1260,H:24-362^99.71%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O42662^O42662^Q:244-1260,H:24-362^99.71%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O42662^O42662^Q:129-227,H:1-33^78.79%ID^E:9e-06^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4755 322-1263[+] sp|Q6DC64|MET16_DANRE^Q6DC64^Q:2-205,H:79-284^40.09%ID^E:3e-38^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q86W50|MET16_HUMAN^Q86W50^Q:2-205,H:79-289^39.91%ID^E:3e-37^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q6GR37|MET16_XENLA^Q6GR37^Q:2-257,H:79-353^35.25%ID^E:3e-37^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q5ZIA0|MET16_CHICK^Q5ZIA0^Q:2-205,H:79-289^39.53%ID^E:6e-37^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q61J97|MET16_CAEBR^Q61J97^Q:2-281,H:79-365^30.87%ID^E:3e-29^RecName: Full=Methyltransferase-like protein 16 homolog;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis UniRef90_O42662^O42662^Q:1-313,H:50-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05971.7^Methyltransf_10^Protein of unknown function (DUF890)^2-206^E:1.1e-48`PF06325.8^PrmA^Ribosomal protein L11 methyltransferase (PrmA)^26-106^E:0.00019`PF05175.9^MTS^Methyltransferase small domain^30-114^E:6.8e-05 . . COG3129^Specifically methylates the adenine in position 1618 of 23S rRNA (By similarity) GO:0008168^molecular_function^methyltransferase activity GO:0008168^molecular_function^methyltransferase activity`GO:0008276^molecular_function^protein methyltransferase activity`GO:0006479^biological_process^protein methylation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:6722:comp4841_c0 comp4841_c0_seq3 sp|O42662|MTT16_SCHPO^O42662^Q:129-1214,H:1-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O42662^O42662^Q:129-1214,H:1-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4756 129-1217[+] sp|Q6DC64|MET16_DANRE^Q6DC64^Q:14-254,H:40-284^39.44%ID^E:7e-46^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q86W50|MET16_HUMAN^Q86W50^Q:13-254,H:39-289^39.13%ID^E:5e-45^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q5ZIA0|MET16_CHICK^Q5ZIA0^Q:14-254,H:40-289^38.58%ID^E:7e-44^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q6GR37|MET16_XENLA^Q6GR37^Q:14-306,H:40-353^35.02%ID^E:1e-43^RecName: Full=Methyltransferase-like protein 16;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q61J97|MET16_CAEBR^Q61J97^Q:11-330,H:37-365^31.81%ID^E:3e-38^RecName: Full=Methyltransferase-like protein 16 homolog;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis UniRef90_O42662^O42662^Q:1-362,H:1-362^100%ID^E:0^RecName: Full=Putative methyltransferase-like protein C27D7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05971.7^Methyltransf_10^Protein of unknown function (DUF890)^15-255^E:1.6e-59`PF06325.8^PrmA^Ribosomal protein L11 methyltransferase (PrmA)^75-155^E:0.00024`PF05175.9^MTS^Methyltransferase small domain^79-163^E:9e-05 . . COG3129^Specifically methylates the adenine in position 1618 of 23S rRNA (By similarity) GO:0008168^molecular_function^methyltransferase activity GO:0008168^molecular_function^methyltransferase activity`GO:0008276^molecular_function^protein methyltransferase activity`GO:0006479^biological_process^protein methylation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-6723-comp4842_c0 comp4842_c0_seq1 sp|O94420|YQGD_SCHPO^O94420^Q:1-339,H:2-114^99.12%ID^E:3e-48^RecName: Full=Probable phosphatase C1620.13;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94420^O94420^Q:1-339,H:2-114^99.12%ID^E:1e-46^RecName: Full=Probable phosphatase C1620.13;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4757 1-342[+] sp|D3DFP8|PSPB_HYDTT^D3DFP8^Q:57-113,H:6-61^47.37%ID^E:6e-07^RecName: Full=Putative phosphoserine phosphatase 2;^Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenobacter UniRef90_O94420^O94420^Q:1-113,H:2-114^99.12%ID^E:2e-58^RecName: Full=Probable phosphatase C1620.13;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00300.17^His_Phos_1^Histidine phosphatase superfamily (branch 1)^56-112^E:6.7e-09 . . . GO:0004647^molecular_function^phosphoserine phosphatase activity`GO:0006564^biological_process^L-serine biosynthetic process . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7039-comp4966_c0 comp4966_c0_seq1 sp|Q9USG8|MU190_SCHPO^Q9USG8^Q:695-4258,H:1-1188^100%ID^E:0^RecName: Full=Meiotically up-regulated gene 190 protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9USG8^Q9USG8^Q:695-4258,H:1-1188^100%ID^E:0^RecName: Full=Meiotically up-regulated gene 190 protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4973 695-4261[+] sp|Q12466|TCB1_YEAST^Q12466^Q:230-792,H:174-651^21.49%ID^E:1e-15^RecName: Full=Tricalbin-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q93XX4|C2D61_ARATH^Q93XX4^Q:170-561,H:10-368^21.87%ID^E:3e-14^RecName: Full=C2 domain-containing protein At1g53590;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9SKR2|SYT1_ARATH^Q9SKR2^Q:171-674,H:4-441^23%ID^E:7e-14^RecName: Full=Synaptotagmin-1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q5M7N9|ESYT3_XENTR^Q5M7N9^Q:164-806,H:74-631^20.73%ID^E:2e-13^RecName: Full=Extended synaptotagmin-3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q8L706|SYT5_ARATH^Q8L706^Q:234-783,H:73-537^22.22%ID^E:8e-13^RecName: Full=Synaptotagmin-5;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_Q9USG8^Q9USG8^Q:1-1188,H:1-1188^100%ID^E:0^RecName: Full=Meiotically up-regulated gene 190 protein;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00168.25^C2^C2 domain^473-557^E:1e-16`PF00168.25^C2^C2 domain^655-763^E:2.1e-08 . ExpAA=25.15^PredHel=1^Topology=i167-189o COG5038^c2 domain protein GO:0032541^cellular_component^cortical endoplasmic reticulum`GO:0016021^cellular_component^integral component of membrane`GO:0005886^cellular_component^plasma membrane`GO:0005544^molecular_function^calcium-dependent phospholipid binding`GO:0008289^molecular_function^lipid binding`GO:0046872^molecular_function^metal ion binding`GO:0090158^biological_process^endoplasmic reticulum membrane organization`GO:0060304^biological_process^regulation of phosphatidylinositol dephosphorylation GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7040:comp4967_c0 comp4967_c0_seq1 sp|O74352|HOB1_SCHPO^O74352^Q:13-1041,H:1-343^100%ID^E:8e-142^RecName: Full=Protein hob1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|O74352|HOB1_SCHPO^O74352^Q:1255-1410,H:415-466^100%ID^E:5e-24^RecName: Full=Protein hob1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74352^O74352^Q:13-1041,H:1-343^100%ID^E:3e-140^RecName: Full=Protein hob1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O74352^O74352^Q:1255-1410,H:415-466^100%ID^E:2e-22^RecName: Full=Protein hob1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4974 1-1413[+] sp|P39743|RV167_YEAST^P39743^Q:5-469,H:1-479^45.21%ID^E:2e-104^RecName: Full=Reduced viability upon starvation protein 167;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P25343|RV161_YEAST^P25343^Q:5-251,H:1-231^27.42%ID^E:6e-15^RecName: Full=Reduced viability upon starvation protein 161;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P43603|LSB3_YEAST^P43603^Q:399-469,H:395-458^45.07%ID^E:1e-12^RecName: Full=LAS seventeen-binding protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|A7A261|LSB3_YEAS7^A7A261^Q:399-469,H:395-458^45.07%ID^E:1e-12^RecName: Full=LAS seventeen-binding protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P32793|YSC84_YEAST^P32793^Q:408-469,H:409-467^48.39%ID^E:9e-12^RecName: Full=Protein YSC84;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O74352^O74352^Q:5-470,H:1-466^100%ID^E:0^RecName: Full=Protein hob1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03114.13^BAR^BAR domain^10-250^E:7.6e-63`PF07653.12^SH3_2^Variant SH3 domain^415-468^E:5.1e-11`PF00018.23^SH3_1^SH3 domain^417-463^E:5.1e-14 . . . GO:0030479^cellular_component^actin cortical patch`GO:0043332^cellular_component^mating projection tip`GO:0008092^molecular_function^cytoskeletal protein binding`GO:0042802^molecular_function^identical protein binding`GO:0005515^molecular_function^protein binding`GO:0051666^biological_process^actin cortical patch localization`GO:0006897^biological_process^endocytosis`GO:0060988^biological_process^lipid tube assembly`GO:0016192^biological_process^vesicle-mediated transport GO:0005515^molecular_function^protein binding`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7041-comp4968_c0 comp4968_c0_seq1 sp|O13838|NUP40_SCHPO^O13838^Q:143-1255,H:1-371^100%ID^E:0^RecName: Full=Nucleoporin nup40;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13838^O13838^Q:143-1255,H:1-371^100%ID^E:0^RecName: Full=Nucleoporin nup40;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.4975 95-1258[+] sp|Q03790|NUP53_YEAST^Q03790^Q:187-300,H:252-374^32.81%ID^E:4e-08^RecName: Full=Nucleoporin NUP53;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O13838^O13838^Q:17-387,H:1-371^100%ID^E:0^RecName: Full=Nucleoporin nup40;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05172.8^Nup35_RRM^Nup53/35/40-type RNA recognition motif^181-278^E:1.7e-35 . . . GO:0031965^cellular_component^nuclear membrane`GO:0005643^cellular_component^nuclear pore`GO:0044613^cellular_component^nuclear pore central transport channel`GO:0044615^cellular_component^nuclear pore nuclear basket`GO:0005487^molecular_function^nucleocytoplasmic transporter activity`GO:0005543^molecular_function^phospholipid binding`GO:0005515^molecular_function^protein binding`GO:0003697^molecular_function^single-stranded DNA binding`GO:0007067^biological_process^mitotic nuclear division`GO:0007094^biological_process^mitotic spindle assembly checkpoint`GO:0051028^biological_process^mRNA transport`GO:0006607^biological_process^NLS-bearing protein import into nucleus`GO:0006999^biological_process^nuclear pore organization`GO:0045893^biological_process^positive regulation of transcription, DNA-templated`GO:0006606^biological_process^protein import into nucleus`GO:0007088^biological_process^regulation of mitosis`GO:0060188^biological_process^regulation of protein desumoylation . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7077-comp4978_c0 comp4978_c0_seq2 sp|O13749|TF2B_SCHPO^O13749^Q:3-1022,H:1-340^100%ID^E:0^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13749^O13749^Q:3-1022,H:1-340^100%ID^E:0^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5009 3-1025[+] sp|Q54FD6|TF2B_DICDI^Q54FD6^Q:17-321,H:20-309^43.28%ID^E:9e-71^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q05959|TF2B_KLULA^Q05959^Q:14-326,H:22-335^42.86%ID^E:2e-70^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|P29055|TF2B_YEAST^P29055^Q:14-336,H:18-339^40.3%ID^E:4e-67^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5R886|TF2B_PONAB^Q5R886^Q:30-321,H:23-300^43.92%ID^E:3e-64^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo`sp|Q4R3J5|TF2B_MACFA^Q4R3J5^Q:30-321,H:23-300^43.92%ID^E:3e-64^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca UniRef90_O13749^O13749^Q:1-340,H:1-340^100%ID^E:0^RecName: Full=Transcription initiation factor IIB;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF08271.7^TF_Zn_Ribbon^TFIIB zinc-binding^18-62^E:3.3e-13`PF00382.14^TFIIB^Transcription factor TFIIB repeat^125-195^E:2.1e-24`PF00382.14^TFIIB^Transcription factor TFIIB repeat^237-306^E:2.3e-16 . . COG1405^Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre- initiation complex (DNA-TBP-TFIIB) (By similarity) GO:0005654^cellular_component^nucleoplasm`GO:0001139^molecular_function^core RNA polymerase II recruiting transcription factor activity`GO:0008270^molecular_function^zinc ion binding`GO:0006355^biological_process^regulation of transcription, DNA-templated`GO:0051123^biological_process^RNA polymerase II transcriptional preinitiation complex assembly`GO:0006367^biological_process^transcription initiation from RNA polymerase II promoter GO:0017025^molecular_function^TBP-class protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7078:comp4979_c0 comp4979_c0_seq1 sp|P17609|YPT2_SCHPO^P17609^Q:51-650,H:1-200^100%ID^E:7e-111^RecName: Full=GTP-binding protein ypt2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P17609^P17609^Q:51-650,H:1-200^100%ID^E:2e-109^RecName: Full=GTP-binding protein ypt2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5010 51-653[+] sp|P20790|RAB8A_DICDI^P20790^Q:3-200,H:9-208^70%ID^E:5e-78^RecName: Full=Ras-related protein Rab-8A;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q39433|RB1BV_BETVU^Q39433^Q:6-200,H:12-212^68.66%ID^E:3e-74^RecName: Full=Ras-related protein RAB1BV;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Beta`sp|P20791|RAB8B_DICDI^P20791^Q:5-180,H:11-186^73.3%ID^E:1e-73^RecName: Full=Ras-related protein Rab-8B;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|P28186|RAE1C_ARATH^P28186^Q:6-179,H:12-186^75.43%ID^E:3e-73^RecName: Full=Ras-related protein RABE1c;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|O24466|RAE1A_ARATH^O24466^Q:6-184,H:12-191^73.33%ID^E:1e-72^RecName: Full=Ras-related protein RABE1a;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_P17609^P17609^Q:1-200,H:1-200^100%ID^E:6e-113^RecName: Full=GTP-binding protein ypt2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00025.16^Arf^ADP-ribosylation factor family^7-133^E:3.4e-14`PF00071.17^Ras^Ras family^11-171^E:4.2e-67`PF08477.8^Miro^Miro-like protein^11-125^E:7.4e-20`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^11-140^E:1.1e-06 . . COG1100^GTP-binding Protein GO:0000331^cellular_component^contractile vacuole`GO:0005886^cellular_component^plasma membrane`GO:0005525^molecular_function^GTP binding`GO:0032794^molecular_function^GTPase activating protein binding`GO:0030036^biological_process^actin cytoskeleton organization`GO:0016339^biological_process^calcium-dependent cell-cell adhesion`GO:0033298^biological_process^contractile vacuole organization`GO:0015031^biological_process^protein transport`GO:0031157^biological_process^regulation of aggregate size involved in sorocarp development`GO:0050708^biological_process^regulation of protein secretion`GO:0007264^biological_process^small GTPase mediated signal transduction GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0005622^cellular_component^intracellular`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7079-comp4980_c0 comp4980_c0_seq1 sp|O13759|CSX1_SCHPO^O13759^Q:2531-4426,H:1-632^100%ID^E:0^RecName: Full=RNA-binding post-transcriptional regulator csx1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13759^O13759^Q:2531-4426,H:1-632^100%ID^E:0^RecName: Full=RNA-binding post-transcriptional regulator csx1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5011 2531-4429[+] sp|Q9FPJ8|RB45A_ARATH^Q9FPJ8^Q:69-367,H:37-330^40.85%ID^E:8e-60^RecName: Full=Polyadenylate-binding protein RBP45A;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9LEB3|RBP47_NICPL^Q9LEB3^Q:81-367,H:80-365^39.31%ID^E:8e-60^RecName: Full=Polyadenylate-binding protein RBP47;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana`sp|F4I3B3|RB47A_ARATH^F4I3B3^Q:77-367,H:111-397^39.12%ID^E:3e-58^RecName: Full=Polyadenylate-binding protein RBP47A;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9SAB3|RB45B_ARATH^Q9SAB3^Q:86-368,H:63-332^41.55%ID^E:1e-57^RecName: Full=Polyadenylate-binding protein RBP45B;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q93W34|RP45C_ARATH^Q93W34^Q:86-368,H:81-349^38.87%ID^E:4e-56^RecName: Full=Polyadenylate-binding protein RBP45C;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_O13759^O13759^Q:1-632,H:1-632^100%ID^E:0^RecName: Full=RNA-binding post-transcriptional regulator csx1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF14259.1^RRM_6^RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)^88-154^E:0.0021`PF00076.17^RRM_1^RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)^184-255^E:3e-12`PF14259.1^RRM_6^RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)^184-255^E:0.0012`PF00076.17^RRM_1^RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)^299-361^E:2.3e-14`PF14259.1^RRM_6^RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)^299-363^E:1.6e-06`PF13893.1^RRM_5^RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)^316-366^E:9.1e-10 . . COG0724^Rna-binding protein GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus`GO:0000166^molecular_function^nucleotide binding`GO:0008143^molecular_function^poly(A) binding`GO:0006397^biological_process^mRNA processing GO:0003676^molecular_function^nucleic acid binding . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7552-comp5211_c0 comp5211_c0_seq1 sp|Q10242|GNTK_SCHPO^Q10242^Q:411-989,H:1-193^100%ID^E:2e-108^RecName: Full=Probable gluconokinase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q10242^Q10242^Q:411-989,H:1-193^100%ID^E:8e-107^RecName: Full=Probable gluconokinase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5458 411-992[+] sp|P39208|IDNK_ECOLI^P39208^Q:17-179,H:6-162^39.88%ID^E:3e-29^RecName: Full=Thermosensitive gluconokinase;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia`sp|P46859|GNTK_ECOLI^P46859^Q:6-185,H:1-173^37.02%ID^E:4e-28^RecName: Full=Thermoresistant gluconokinase;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia`sp|Q03786|GNTK_YEAST^Q03786^Q:16-162,H:13-163^43.23%ID^E:1e-27^RecName: Full=Probable gluconokinase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|B0BML1|GNTK_XENTR^B0BML1^Q:16-169,H:2-163^40.61%ID^E:6e-25^RecName: Full=Probable gluconokinase;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q54PI5|GNTK_DICDI^Q54PI5^Q:14-160,H:27-173^39.6%ID^E:8e-25^RecName: Full=Probable gluconokinase;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_Q10242^Q10242^Q:1-193,H:1-193^100%ID^E:2e-111^RecName: Full=Probable gluconokinase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF13671.1^AAA_33^AAA domain^16-143^E:4.6e-12`PF13207.1^AAA_17^AAA domain^16-132^E:1.2e-11`PF00004.24^AAA^ATPase family associated with various cellular activities (AAA)^18-44^E:0.00014`PF13238.1^AAA_18^AAA domain^19-143^E:1.8e-08`PF01202.17^SKI^Shikimate kinase^24-182^E:1.2e-11 . . COG3265^carbohydrate kinase, thermoresistant glucokinase family GO:0005524^molecular_function^ATP binding`GO:0046316^molecular_function^gluconokinase activity`GO:0046177^biological_process^D-gluconate catabolic process`GO:0019521^biological_process^D-gluconate metabolic process`GO:0046183^biological_process^L-idonate catabolic process GO:0005524^molecular_function^ATP binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7553:comp5212_c0 comp5212_c0_seq1 sp|P28748|SPI1_SCHPO^P28748^Q:59-706,H:1-216^100%ID^E:2e-117^RecName: Full=GTP-binding nuclear protein spi1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P28748^P28748^Q:59-706,H:1-216^100%ID^E:5e-116^RecName: Full=GTP-binding nuclear protein spi1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5460 59-709[+] sp|Q9P4E9|GSP1_CANAW^Q9P4E9^Q:5-216,H:3-214^90.57%ID^E:5e-112^RecName: Full=GTP-binding nuclear protein GSP1/Ran;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida`sp|P32836|GSP2_YEAST^P32836^Q:7-216,H:11-220^90%ID^E:3e-111^RecName: Full=GTP-binding nuclear protein GSP2/CNR2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q74ZA9|GSP1_ASHGO^Q74ZA9^Q:7-216,H:5-214^90%ID^E:8e-111^RecName: Full=GTP-binding nuclear protein GSP1/Ran;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|Q6FR65|GSP1_CANGA^Q6FR65^Q:7-216,H:5-214^90.95%ID^E:8e-107^RecName: Full=GTP-binding nuclear protein GSP1/Ran;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces`sp|P32835|GSP1_YEAST^P32835^Q:7-216,H:10-219^90%ID^E:8e-106^RecName: Full=GTP-binding nuclear protein GSP1/CNR1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_P28748^P28748^Q:1-216,H:1-216^100%ID^E:1e-125^RecName: Full=GTP-binding nuclear protein spi1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00025.16^Arf^ADP-ribosylation factor family^9-136^E:7.9e-11`PF00071.17^Ras^Ras family^11-167^E:4.5e-48`PF08477.8^Miro^Miro-like protein^11-124^E:1.1e-14`PF04670.7^Gtr1_RagA^Gtr1/RagA G protein conserved region^11-94^E:0.00014 . . COG1100^GTP-binding Protein GO:0005634^cellular_component^nucleus`GO:0005525^molecular_function^GTP binding`GO:0003924^molecular_function^GTPase activity`GO:0006886^biological_process^intracellular protein transport`GO:0006913^biological_process^nucleocytoplasmic transport`GO:0007264^biological_process^small GTPase mediated signal transduction GO:0005525^molecular_function^GTP binding`GO:0007264^biological_process^small GTPase mediated signal transduction`GO:0005622^cellular_component^intracellular`GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7554-comp5213_c0 comp5213_c0_seq1 sp|O94377|ATPK_SCHPO^O94377^Q:45-296,H:1-84^100%ID^E:4e-43^RecName: Full=ATP synthase subunit f, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94377^O94377^Q:45-296,H:1-84^100%ID^E:1e-41^RecName: Full=ATP synthase subunit f, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5462 3-335[+] sp|Q06405|ATPK_YEAST^Q06405^Q:20-110,H:7-101^41.05%ID^E:4e-15^RecName: Full=ATP synthase subunit f, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O94377^O94377^Q:15-110,H:1-96^100%ID^E:2e-48^RecName: Full=ATP synthase subunit f, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10791.4^F1F0-ATPsyn_F^Mitochondrial F1-F0 ATP synthase subunit F of fungi^16-105^E:1.4e-35 . ExpAA=35.29^PredHel=2^Topology=i7-29o82-104i NOG80866^ GO:0000276^cellular_component^mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)`GO:0006200^biological_process^ATP catabolic process`GO:0015986^biological_process^ATP synthesis coupled proton transport . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7573-comp5234_c0 comp5234_c0_seq1 sp|G2TRL4|PRL65_SCHPO^G2TRL4^Q:113-307,H:1-65^100%ID^E:2e-23^RecName: Full=Uncharacterized protein prl65;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_G2TRL4^G2TRL4^Q:113-307,H:1-65^100%ID^E:5e-22^RecName: Full=Uncharacterized protein prl65;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . . . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7574:comp5235_c0 comp5235_c0_seq1 sp|O59804|CH10_SCHPO^O59804^Q:306-617,H:1-104^100%ID^E:1e-50^RecName: Full=10 kDa heat shock protein, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O59804^O59804^Q:306-617,H:1-104^100%ID^E:3e-49^RecName: Full=10 kDa heat shock protein, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5479 306-620[+] sp|P38910|CH10_YEAST^P38910^Q:1-102,H:1-103^59.22%ID^E:8e-28^RecName: Full=10 kDa heat shock protein, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P34893|CH10_ARATH^P34893^Q:9-104,H:3-97^53.12%ID^E:2e-21^RecName: Full=10 kDa chaperonin;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q96539|CH10_BRANA^Q96539^Q:9-104,H:3-97^51.04%ID^E:4e-20^RecName: Full=10 kDa chaperonin;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica`sp|Q9W6X3|CH10_ORYLA^Q9W6X3^Q:7-100,H:2-95^42.55%ID^E:1e-17^RecName: Full=10 kDa heat shock protein, mitochondrial;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias`sp|Q5DC69|CH10_SCHJA^Q5DC69^Q:6-100,H:4-98^42.11%ID^E:2e-17^RecName: Full=10 kDa heat shock protein, mitochondrial;^Eukaryota; Metazoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma UniRef90_O59804^O59804^Q:1-104,H:1-104^100%ID^E:3e-51^RecName: Full=10 kDa heat shock protein, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00166.16^Cpn10^Chaperonin 10 Kd subunit^11-102^E:1.1e-26 . . COG0234^Binds to cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter (By similarity) GO:0005759^cellular_component^mitochondrial matrix`GO:0005524^molecular_function^ATP binding`GO:0051087^molecular_function^chaperone binding`GO:0051082^molecular_function^unfolded protein binding`GO:0006457^biological_process^protein folding`GO:0042026^biological_process^protein refolding GO:0006457^biological_process^protein folding`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7575:comp5236_c0 comp5236_c0_seq1 sp|P19117|IPYR_SCHPO^P19117^Q:26-892,H:1-289^100%ID^E:4e-171^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P19117^P19117^Q:26-892,H:1-289^100%ID^E:1e-169^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5480 2-895[+] sp|Q6C1T4|IPYR_YARLI^Q6C1T4^Q:9-297,H:1-287^74.91%ID^E:5e-130^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia`sp|Q6BWA5|IPYR_DEBHA^Q6BWA5^Q:12-295,H:3-286^73.24%ID^E:1e-126^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces`sp|Q5B912|IPYR_EMENI^Q5B912^Q:12-295,H:3-285^74.3%ID^E:2e-126^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|O13505|IPYR_PICPA^O13505^Q:12-295,H:3-284^74.3%ID^E:5e-126^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Komagataella`sp|Q6MVH7|IPYR_NEUCR^Q6MVH7^Q:8-295,H:1-288^75.43%ID^E:3e-124^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora UniRef90_P19117^P19117^Q:9-297,H:1-289^100%ID^E:8e-170^RecName: Full=Inorganic pyrophosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00719.14^Pyrophosphatase^Inorganic pyrophosphatase^54-237^E:1.3e-51 . . COG0221^Pyrophosphate phospho-hydrolase GO:0005737^cellular_component^cytoplasm`GO:0004427^molecular_function^inorganic diphosphatase activity`GO:0000287^molecular_function^magnesium ion binding`GO:0006796^biological_process^phosphate-containing compound metabolic process GO:0000287^molecular_function^magnesium ion binding`GO:0004427^molecular_function^inorganic diphosphatase activity`GO:0006796^biological_process^phosphate-containing compound metabolic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7576-comp5237_c0 comp5237_c0_seq1 sp|O13991|YEG9_SCHPO^O13991^Q:145-1251,H:1-369^100%ID^E:0^RecName: Full=Uncharacterized oxidoreductase C26H5.09c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13991^O13991^Q:145-1251,H:1-369^100%ID^E:0^RecName: Full=Uncharacterized oxidoreductase C26H5.09c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5481 145-1254[+] sp|P77376|YDGJ_ECOLI^P77376^Q:4-368,H:5-346^36.16%ID^E:1e-56^RecName: Full=Uncharacterized oxidoreductase YdgJ;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia`sp|O32223|YVAA_BACSU^O32223^Q:4-367,H:14-356^35.16%ID^E:5e-53^RecName: Full=scyllo-inositol 2-dehydrogenase (NADP(+));^Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus`sp|P46853|YHHX_ECOLI^P46853^Q:4-363,H:3-340^36.46%ID^E:2e-49^RecName: Full=Uncharacterized oxidoreductase YhhX;^Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia`sp|Q04869|YM94_YEAST^Q04869^Q:1-208,H:1-211^30.99%ID^E:1e-18^RecName: Full=Uncharacterized protein YMR315W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P74041|Y816_SYNY3^P74041^Q:4-262,H:7-261^26.91%ID^E:1e-16^RecName: Full=Uncharacterized oxidoreductase sll0816;^Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechocystis UniRef90_O13991^O13991^Q:1-369,H:1-369^100%ID^E:0^RecName: Full=Uncharacterized oxidoreductase C26H5.09c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01408.17^GFO_IDH_MocA^Oxidoreductase family, NAD-binding Rossmann fold^4-124^E:7.1e-24`PF03447.11^NAD_binding_3^Homoserine dehydrogenase, NAD binding domain^29-117^E:4e-05`PF02894.12^GFO_IDH_MocA_C^Oxidoreductase family, C-terminal alpha/beta domain^138-252^E:2.8e-30 . . COG0673^oxidoreductase GO:0016491^molecular_function^oxidoreductase activity GO:0016491^molecular_function^oxidoreductase activity`GO:0050661^molecular_function^NADP binding`GO:0055114^biological_process^oxidation-reduction process`GO:0008152^biological_process^metabolic process . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7640-comp5312_c0 comp5312_c0_seq1 sp|Q9UR09|PSU1_SCHPO^Q9UR09^Q:776-1549,H:160-417^100%ID^E:6e-155^RecName: Full=Probable secreted beta-glucosidase PSU1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|Q9UR09|PSU1_SCHPO^Q9UR09^Q:299-445,H:1-49^100%ID^E:4e-11^RecName: Full=Probable secreted beta-glucosidase PSU1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UR09^Q9UR09^Q:776-1549,H:160-417^100%ID^E:2e-153^RecName: Full=Probable secreted beta-glucosidase PSU1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_Q9UR09^Q9UR09^Q:299-445,H:1-49^100%ID^E:1e-09^RecName: Full=Probable secreted beta-glucosidase PSU1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5550 299-1552[+] sp|P46955|NCA3_YEAST^P46955^Q:141-417,H:60-337^56.27%ID^E:6e-87^RecName: Full=Beta-glucosidase-like protein NCA3, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P40472|SIM1_YEAST^P40472^Q:162-417,H:219-475^60.85%ID^E:4e-85^RecName: Full=Probable secreted beta-glucosidase SIM1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P36135|UTH1_YEAST^P36135^Q:159-417,H:106-365^56.32%ID^E:7e-80^RecName: Full=Probable secreted beta-glucosidase UTH1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|A7A003|UTH1_YEAS7^A7A003^Q:159-417,H:103-362^56.32%ID^E:7e-80^RecName: Full=Probable secreted beta-glucosidase UTH1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|B5VMJ0|UTH1_YEAS6^B5VMJ0^Q:159-417,H:103-362^56.32%ID^E:8e-80^RecName: Full=Probable secreted beta-glucosidase UTH1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q9UR09^Q9UR09^Q:1-417,H:1-417^100%ID^E:0^RecName: Full=Probable secreted beta-glucosidase PSU1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03856.8^SUN^Beta-glucosidase (SUN family)^164-405^E:2.1e-94 sigP:1^18^0.814^YES . euNOG04386^esterase GO:0005739^cellular_component^mitochondrion`GO:0007005^biological_process^mitochondrion organization . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7641:comp5314_c0 comp5314_c0_seq1 sp|P78780|DHAS_SCHPO^P78780^Q:38-1108,H:1-357^100%ID^E:0^RecName: Full=Probable aspartate-semialdehyde dehydrogenase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P78780^P78780^Q:38-1108,H:1-357^100%ID^E:0^RecName: Full=Probable aspartate-semialdehyde dehydrogenase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5551 38-1111[+] sp|P13663|DHAS_YEAST^P13663^Q:1-357,H:1-365^54.5%ID^E:2e-109^RecName: Full=Aspartate-semialdehyde dehydrogenase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q57658|DHAS_METJA^Q57658^Q:5-354,H:10-352^49.58%ID^E:1e-86^RecName: Full=Aspartate-semialdehyde dehydrogenase;^Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus`sp|O26890|DHAS_METTH^O26890^Q:6-350,H:4-342^47.55%ID^E:2e-83^RecName: Full=Aspartate-semialdehyde dehydrogenase;^Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter`sp|Q75FC8|DHAS_LEPIC^Q75FC8^Q:1-337,H:1-328^46.47%ID^E:4e-78^RecName: Full=Aspartate-semialdehyde dehydrogenase;^Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira`sp|P41394|DHAS_LEPIN^P41394^Q:1-337,H:1-328^46.18%ID^E:7e-78^RecName: Full=Aspartate-semialdehyde dehydrogenase;^Bacteria; Spirochaetes; Spirochaetales; Leptospiraceae; Leptospira UniRef90_P78780^P78780^Q:1-357,H:1-357^100%ID^E:0^RecName: Full=Probable aspartate-semialdehyde dehydrogenase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01118.19^Semialdhyde_dh^Semialdehyde dehydrogenase, NAD binding domain^5-129^E:3.3e-33`PF02774.13^Semialdhyde_dhC^Semialdehyde dehydrogenase, dimerisation domain^160-337^E:3.1e-46 . . COG0136^Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0004073^molecular_function^aspartate-semialdehyde dehydrogenase activity`GO:0003942^molecular_function^N-acetyl-gamma-glutamyl-phosphate reductase activity`GO:0051287^molecular_function^NAD binding`GO:0050661^molecular_function^NADP binding`GO:0006531^biological_process^aspartate metabolic process`GO:0009090^biological_process^homoserine biosynthetic process`GO:0009097^biological_process^isoleucine biosynthetic process`GO:0009089^biological_process^lysine biosynthetic process via diaminopimelate`GO:0009086^biological_process^methionine biosynthetic process`GO:0009088^biological_process^threonine biosynthetic process GO:0016620^molecular_function^oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor`GO:0051287^molecular_function^NAD binding`GO:0055114^biological_process^oxidation-reduction process`GO:0003942^molecular_function^N-acetyl-gamma-glutamyl-phosphate reductase activity`GO:0046983^molecular_function^protein dimerization activity`GO:0008652^biological_process^cellular amino acid biosynthetic process`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7642-comp5315_c0 comp5315_c0_seq1 sp|O74992|YJZI_SCHPO^O74992^Q:262-552,H:1-97^100%ID^E:5e-41^RecName: Full=Uncharacterized membrane protein C338.18;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74992^O74992^Q:262-552,H:1-97^100%ID^E:2e-39^RecName: Full=Uncharacterized membrane protein C338.18;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5552 262-615[+] . UniRef90_O74992^O74992^Q:1-117,H:1-117^100%ID^E:2e-59^RecName: Full=Uncharacterized membrane protein C338.18;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . ExpAA=35.53^PredHel=1^Topology=i61-83o . . . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7682-comp5363_c0 comp5363_c0_seq1 sp|Q9UTF0|YIN2_SCHPO^Q9UTF0^Q:47-214,H:1-56^100%ID^E:7e-17^RecName: Full=SERF-like protein C1705.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTF0^Q9UTF0^Q:47-214,H:1-56^100%ID^E:3e-15^RecName: Full=SERF-like protein C1705.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0005829^cellular_component^cytosol`GO:0005730^cellular_component^nucleolus`GO:0005634^cellular_component^nucleus . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7683:comp5364_c0 comp5364_c0_seq1 sp|Q9Y7K0|YGL3_SCHPO^Q9Y7K0^Q:298-1038,H:1-247^100%ID^E:2e-138^RecName: Full=UPF0659 protein C216.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7K0^Q9Y7K0^Q:298-1038,H:1-247^100%ID^E:6e-137^RecName: Full=UPF0659 protein C216.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5593 298-1041[+] sp|Q04304|YMY0_YEAST^Q04304^Q:6-232,H:8-224^31.82%ID^E:1e-15^RecName: Full=UPF0659 protein YMR090W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|O07609|YHFK_BACSU^O07609^Q:1-232,H:1-211^30.04%ID^E:4e-15^RecName: Full=Uncharacterized sugar epimerase YhfK;^Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus UniRef90_Q9Y7K0^Q9Y7K0^Q:1-247,H:1-247^100%ID^E:2e-142^RecName: Full=UPF0659 protein C216.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF13460.1^NAD_binding_10^NADH(P)-binding^5-184^E:4.2e-21`PF01370.16^Epimerase^NAD dependent epimerase/dehydratase family^5-174^E:1.5e-07 . . COG0702^epimerase dehydratase GO:0005737^cellular_component^cytoplasm GO:0003824^molecular_function^catalytic activity`GO:0050662^molecular_function^coenzyme binding`GO:0044237^biological_process^cellular metabolic process . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7684-comp5365_c0 comp5365_c0_seq1 sp|Q9UT97|PSA5_SCHPO^Q9UT97^Q:42-776,H:1-245^100%ID^E:1e-135^RecName: Full=Probable proteasome subunit alpha type-5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UT97^Q9UT97^Q:42-776,H:1-245^100%ID^E:3e-134^RecName: Full=Probable proteasome subunit alpha type-5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5594 3-785[+] sp|P32379|PSA5_YEAST^P32379^Q:14-252,H:1-240^68.33%ID^E:1e-95^RecName: Full=Proteasome subunit alpha type-5;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|O81149|PSA5A_ARATH^O81149^Q:14-254,H:1-236^67.22%ID^E:2e-93^RecName: Full=Proteasome subunit alpha type-5-A;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q42134|PSA5B_ARATH^Q42134^Q:14-254,H:1-236^67.22%ID^E:3e-93^RecName: Full=Proteasome subunit alpha type-5-B;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9LSU1|PSA5_ORYSJ^Q9LSU1^Q:14-254,H:1-236^67.22%ID^E:4e-93^RecName: Full=Proteasome subunit alpha type-5;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza`sp|Q9M4T8|PSA5_SOYBN^Q9M4T8^Q:14-254,H:1-236^66.39%ID^E:4e-92^RecName: Full=Proteasome subunit alpha type-5;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja UniRef90_Q9UT97^Q9UT97^Q:14-260,H:1-247^100%ID^E:3e-142^RecName: Full=Probable proteasome subunit alpha type-5;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10584.4^Proteasome_A_N^Proteasome subunit A N-terminal signature^21-43^E:3.7e-14`PF00227.21^Proteasome^Proteasome subunit^44-233^E:2.7e-57 . . COG0638^The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0042175^cellular_component^nuclear outer membrane-endoplasmic reticulum membrane network`GO:0005634^cellular_component^nucleus`GO:0019773^cellular_component^proteasome core complex, alpha-subunit complex`GO:0034515^cellular_component^proteasome storage granule`GO:0004298^molecular_function^threonine-type endopeptidase activity`GO:0010499^biological_process^proteasomal ubiquitin-independent protein catabolic process`GO:0043161^biological_process^proteasome-mediated ubiquitin-dependent protein catabolic process GO:0004175^molecular_function^endopeptidase activity`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process`GO:0019773^cellular_component^proteasome core complex, alpha-subunit complex`GO:0004298^molecular_function^threonine-type endopeptidase activity`GO:0051603^biological_process^proteolysis involved in cellular protein catabolic process`GO:0005839^cellular_component^proteasome core complex . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7711-comp5398_c0 comp5398_c0_seq1 sp|O13656|TOM40_SCHPO^O13656^Q:122-1117,H:1-332^100%ID^E:0^RecName: Full=Probable mitochondrial import receptor subunit tom40;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13656^O13656^Q:122-1117,H:1-332^100%ID^E:0^RecName: Full=Probable mitochondrial import receptor subunit tom40;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5624 122-1156[+] sp|P23644|TOM40_YEAST^P23644^Q:16-336,H:46-372^43.94%ID^E:2e-78^RecName: Full=Mitochondrial import receptor subunit TOM40;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P24391|TOM40_NEUCR^P24391^Q:7-337,H:18-340^41.44%ID^E:2e-75^RecName: Full=Mitochondrial import receptor subunit tom40;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|Q6P825|TOM40_XENTR^Q6P825^Q:27-323,H:52-335^29.35%ID^E:2e-21^RecName: Full=Mitochondrial import receptor subunit TOM40 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q7ZTM6|TOM40_XENLA^Q7ZTM6^Q:27-323,H:52-335^28.71%ID^E:2e-20^RecName: Full=Mitochondrial import receptor subunit TOM40 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q9LHE5|TO401_ARATH^Q9LHE5^Q:13-323,H:18-308^26.23%ID^E:3e-19^RecName: Full=Mitochondrial import receptor subunit TOM40-1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_O13656^O13656^Q:1-344,H:1-344^100%ID^E:0^RecName: Full=Probable mitochondrial import receptor subunit tom40;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01459.17^Porin_3^Eukaryotic porin^29-318^E:1.7e-82 . . . GO:0005829^cellular_component^cytosol`GO:0005758^cellular_component^mitochondrial intermembrane space`GO:0005741^cellular_component^mitochondrial outer membrane`GO:0005742^cellular_component^mitochondrial outer membrane translocase complex`GO:0046930^cellular_component^pore complex`GO:0015288^molecular_function^porin activity`GO:0005515^molecular_function^protein binding`GO:0015266^molecular_function^protein channel activity`GO:0006811^biological_process^ion transport`GO:0030150^biological_process^protein import into mitochondrial matrix GO:0055085^biological_process^transmembrane transport`GO:0005741^cellular_component^mitochondrial outer membrane . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7712:comp5399_c0 comp5399_c0_seq1 sp|Q9UUM7|HOB3_SCHPO^Q9UUM7^Q:31-822,H:1-264^100%ID^E:2e-137^RecName: Full=Protein hob3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUM7^Q9UUM7^Q:31-822,H:1-264^100%ID^E:7e-136^RecName: Full=Protein hob3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5625 1-825[+] sp|P25343|RV161_YEAST^P25343^Q:11-271,H:1-263^58.11%ID^E:2e-90^RecName: Full=Reduced viability upon starvation protein 161;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5PPZ5|BIN3_XENLA^Q5PPZ5^Q:11-269,H:1-250^29.74%ID^E:3e-19^RecName: Full=Bridging integrator 3 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|P50478|AMPH_CHICK^P50478^Q:17-234,H:14-234^26.55%ID^E:9e-17^RecName: Full=Amphiphysin;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|O08838|AMPH_RAT^O08838^Q:17-234,H:14-234^27.07%ID^E:2e-16^RecName: Full=Amphiphysin;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P49418|AMPH_HUMAN^P49418^Q:17-234,H:14-234^27.07%ID^E:2e-16^RecName: Full=Amphiphysin;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q9UUM7^Q9UUM7^Q:11-274,H:1-264^100%ID^E:6e-155^RecName: Full=Protein hob3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF03114.13^BAR^BAR domain^16-239^E:6.3e-59 . . . GO:0030479^cellular_component^actin cortical patch`GO:0005937^cellular_component^mating projection`GO:0045121^cellular_component^membrane raft`GO:0008092^molecular_function^cytoskeletal protein binding`GO:0005515^molecular_function^protein binding`GO:0051666^biological_process^actin cortical patch localization`GO:0030036^biological_process^actin cytoskeleton organization`GO:0031532^biological_process^actin cytoskeleton reorganization`GO:0000747^biological_process^conjugation with cellular fusion`GO:0006897^biological_process^endocytosis`GO:0060988^biological_process^lipid tube assembly`GO:0006970^biological_process^response to osmotic stress`GO:0042594^biological_process^response to starvation GO:0005515^molecular_function^protein binding`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7713-comp5400_c0 comp5400_c0_seq1 sp|P23566|UBC2_SCHPO^P23566^Q:116-568,H:1-151^100%ID^E:1e-73^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P23566^P23566^Q:116-568,H:1-151^100%ID^E:4e-72^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5626 2-571[+] sp|Q96UP5|UBC2_EMENI^Q96UP5^Q:39-188,H:1-150^83.33%ID^E:9e-74^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q4WLA7|UBC2_ASPFU^Q4WLA7^Q:39-188,H:1-150^82.67%ID^E:3e-73^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q58FS2|UBC2_TRIHA^Q58FS2^Q:39-188,H:1-150^82%ID^E:5e-73^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Hypocreaceae; Trichoderma`sp|P78717|UBC2_NECHA^P78717^Q:39-188,H:1-150^82.67%ID^E:8e-73^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; Fusarium solani species complex`sp|P52493|UBC2_NEUCR^P52493^Q:39-188,H:1-150^82%ID^E:3e-71^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora UniRef90_P23566^P23566^Q:39-189,H:1-151^100%ID^E:7e-85^RecName: Full=Ubiquitin-conjugating enzyme E2 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00179.21^UQ_con^Ubiquitin-conjugating enzyme^46-182^E:3.6e-50 . . . GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0005524^molecular_function^ATP binding`GO:0019789^molecular_function^SUMO ligase activity`GO:0004842^molecular_function^ubiquitin-protein transferase activity`GO:0016568^biological_process^chromatin modification`GO:0006281^biological_process^DNA repair`GO:0016925^biological_process^protein sumoylation`GO:0006355^biological_process^regulation of transcription, DNA-templated`GO:0030435^biological_process^sporulation resulting in formation of a cellular spore`GO:0006351^biological_process^transcription, DNA-templated GO:0016881^molecular_function^acid-amino acid ligase activity . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7755-comp5451_c0 comp5451_c0_seq1 sp|O60135|LCF1_SCHPO^O60135^Q:119-2146,H:1-676^100%ID^E:0^RecName: Full=Long-chain-fatty-acid--CoA ligase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60135^O60135^Q:119-2146,H:1-676^100%ID^E:0^RecName: Full=Long-chain-fatty-acid--CoA ligase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5665 119-2149[+] sp|P30624|LCF1_YEAST^P30624^Q:13-675,H:15-698^43.31%ID^E:5e-160^RecName: Full=Long-chain-fatty-acid--CoA ligase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P47912|LCF4_YEAST^P47912^Q:13-676,H:15-692^41.98%ID^E:3e-149^RecName: Full=Long-chain-fatty-acid--CoA ligase 4;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P39002|LCF3_YEAST^P39002^Q:4-676,H:5-692^40.23%ID^E:6e-146^RecName: Full=Long-chain-fatty-acid--CoA ligase 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9CAP8|LACS9_ARATH^Q9CAP8^Q:20-675,H:42-691^34.62%ID^E:1e-107^RecName: Full=Long chain acyl-CoA synthetase 9, chloroplastic;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9SJD4|LACS8_ARATH^Q9SJD4^Q:14-675,H:59-720^34.4%ID^E:3e-106^RecName: Full=Long chain acyl-CoA synthetase 8;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_O60135^O60135^Q:1-676,H:1-676^100%ID^E:0^RecName: Full=Long-chain-fatty-acid--CoA ligase 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00501.23^AMP-binding^AMP-binding enzyme^98-566^E:1.5e-103 . . COG1022^Amp-dependent synthetase and ligase GO:0005811^cellular_component^lipid particle`GO:0005524^molecular_function^ATP binding`GO:0004467^molecular_function^long-chain fatty acid-CoA ligase activity`GO:0031956^molecular_function^medium-chain fatty acid-CoA ligase activity`GO:0001676^biological_process^long-chain fatty acid metabolic process`GO:0015909^biological_process^long-chain fatty acid transport`GO:0035336^biological_process^long-chain fatty-acyl-CoA metabolic process GO:0003824^molecular_function^catalytic activity`GO:0008152^biological_process^metabolic process . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7756:comp5452_c0 comp5452_c0_seq1 sp|O13775|SYEC_SCHPO^O13775^Q:128-2275,H:1-716^99.86%ID^E:0^RecName: Full=Probable glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O13775^O13775^Q:128-2275,H:1-716^99.86%ID^E:0^RecName: Full=Probable glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5666 128-2278[+] sp|P46655|SYEC_YEAST^P46655^Q:2-715,H:4-707^52.21%ID^E:0^RecName: Full=Glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P07814|SYEP_HUMAN^P07814^Q:88-708,H:78-707^46.79%ID^E:4e-166^RecName: Full=Bifunctional glutamate/proline--tRNA ligase;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q54KB8|SYEC_DICDI^Q54KB8^Q:56-706,H:52-727^41.78%ID^E:1e-155^RecName: Full=Probable glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|Q8SSE4|SYEC_ENCCU^Q8SSE4^Q:194-690,H:139-624^48.4%ID^E:1e-130^RecName: Full=Probable glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Fungi; Microsporidia; Unikaryonidae; Encephalitozoon`sp|A9CSZ1|SYEC_ENTBH^A9CSZ1^Q:202-694,H:131-618^44.87%ID^E:2e-116^RecName: Full=Probable glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Fungi; Microsporidia; Enterocytozoonidae; Enterocytozoon UniRef90_O13775^O13775^Q:1-716,H:1-716^99.86%ID^E:0^RecName: Full=Probable glutamate--tRNA ligase, cytoplasmic;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00749.16^tRNA-synt_1c^tRNA synthetases class I (E and Q), catalytic domain^206-510^E:8.2e-105`PF03950.13^tRNA-synt_1c_C^tRNA synthetases class I (E and Q), anti-codon binding domain^513-690^E:3.5e-41 . . COG0008^Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) (By similarity) GO:0017102^cellular_component^methionyl glutamyl tRNA synthetase complex`GO:0005739^cellular_component^mitochondrion`GO:0005524^molecular_function^ATP binding`GO:0004818^molecular_function^glutamate-tRNA ligase activity`GO:0005515^molecular_function^protein binding`GO:0003723^molecular_function^RNA binding`GO:0006424^biological_process^glutamyl-tRNA aminoacylation GO:0005524^molecular_function^ATP binding`GO:0016876^molecular_function^ligase activity, forming aminoacyl-tRNA and related compounds`GO:0043039^biological_process^tRNA aminoacylation`GO:0000166^molecular_function^nucleotide binding`GO:0004812^molecular_function^aminoacyl-tRNA ligase activity`GO:0006418^biological_process^tRNA aminoacylation for protein translation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7757-comp5454_c0 comp5454_c0_seq1 sp|P87142|YDMC_SCHPO^P87142^Q:1-1683,H:6-566^100%ID^E:0^RecName: Full=Heat shock protein 70 homolog C57A7.12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87142^P87142^Q:1-1683,H:6-566^100%ID^E:0^RecName: Full=Heat shock protein 70 homolog C57A7.12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5667 1-1686[+] sp|P38788|SSZ1_YEAST^P38788^Q:21-547,H:5-526^41.23%ID^E:2e-107^RecName: Full=Ribosome-associated complex subunit SSZ1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q75C78|GRP78_ASHGO^Q75C78^Q:14-478,H:42-488^31.01%ID^E:2e-59^RecName: Full=78 kDa glucose-regulated protein homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium`sp|Q9HG01|GRP78_PICAN^Q9HG01^Q:8-478,H:28-482^30.61%ID^E:7e-59^RecName: Full=78 kDa glucose-regulated protein homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetales incertae sedis; Ogataea`sp|P16474|GRP78_YEAST^P16474^Q:14-478,H:45-492^30.72%ID^E:1e-58^RecName: Full=78 kDa glucose-regulated protein homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P22010|GRP78_KLULA^P22010^Q:14-550,H:46-538^29.58%ID^E:3e-58^RecName: Full=78 kDa glucose-regulated protein homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces UniRef90_P87142^P87142^Q:1-561,H:6-566^100%ID^E:0^RecName: Full=Heat shock protein 70 homolog C57A7.12;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00012.15^HSP70^Hsp70 protein^21-477^E:4.2e-78 . . COG0443^heat shock protein 70 GO:0005737^cellular_component^cytoplasm`GO:0005844^cellular_component^polysome`GO:0005524^molecular_function^ATP binding`GO:0005515^molecular_function^protein binding`GO:0051082^molecular_function^unfolded protein binding`GO:0002181^biological_process^cytoplasmic translation`GO:0006450^biological_process^regulation of translational fidelity`GO:0006364^biological_process^rRNA processing`GO:0006452^biological_process^translational frameshifting . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7763-comp5460_c0 comp5460_c0_seq1 sp|Q09130|IF2G_SCHPO^Q09130^Q:266-1603,H:1-446^100%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit gamma;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09130^Q09130^Q:266-1603,H:1-446^100%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit gamma;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5673 266-1606[+] sp|P32481|IF2G_YEAST^P32481^Q:4-445,H:81-524^76.35%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit gamma;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q5ZMS3|IF2G_CHICK^Q5ZMS3^Q:4-445,H:22-466^75.28%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q2KHU8|IF2G_BOVIN^Q2KHU8^Q:4-445,H:22-466^75.73%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|P81795|IF2G_RAT^P81795^Q:4-445,H:22-466^75.51%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|P41091|IF2G_HUMAN^P41091^Q:4-445,H:22-466^75.51%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit 3;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q09130^Q09130^Q:1-446,H:1-446^100%ID^E:0^RecName: Full=Eukaryotic translation initiation factor 2 subunit gamma;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00009.22^GTP_EFTU^Elongation factor Tu GTP binding domain^22-224^E:2.2e-40`PF03144.20^GTP_EFTU_D2^Elongation factor Tu domain 2^256-338^E:8.3e-12`PF09173.6^eIF2_C^Initiation factor eIF2 gamma, C terminal^348-437^E:4.6e-36 . . COG5257^translation initiation factor GO:0016282^cellular_component^eukaryotic 43S preinitiation complex`GO:0005850^cellular_component^eukaryotic translation initiation factor 2 complex`GO:0043614^cellular_component^multi-eIF complex`GO:0005525^molecular_function^GTP binding`GO:0003924^molecular_function^GTPase activity`GO:0005515^molecular_function^protein binding`GO:0003743^molecular_function^translation initiation factor activity`GO:0031369^molecular_function^translation initiation factor binding`GO:0001731^biological_process^formation of translation preinitiation complex`GO:0045903^biological_process^positive regulation of translational fidelity`GO:0006413^biological_process^translational initiation GO:0003924^molecular_function^GTPase activity`GO:0005525^molecular_function^GTP binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7764:comp5461_c0 comp5461_c0_seq1 sp|O60155|YHY6_SCHPO^O60155^Q:52-2199,H:1-716^100%ID^E:0^RecName: Full=Putative proline--tRNA ligase C19C7.06;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60155^O60155^Q:52-2199,H:1-716^100%ID^E:0^RecName: Full=Putative proline--tRNA ligase C19C7.06;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5674 1-2202[+] sp|P38708|YHI0_YEAST^P38708^Q:61-733,H:20-688^54.55%ID^E:0^RecName: Full=Putative proline--tRNA ligase YHR020W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P07814|SYEP_HUMAN^P07814^Q:222-733,H:1014-1512^58.09%ID^E:7e-174^RecName: Full=Bifunctional glutamate/proline--tRNA ligase;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q8I5R7|SYP_PLAF7^Q8I5R7^Q:213-733,H:243-746^51.92%ID^E:2e-154^RecName: Full=Proline--tRNA ligase;^Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Laverania)`sp|Q8SSD7|SYP_ENCCU^Q8SSD7^Q:222-733,H:25-520^47.95%ID^E:9e-148^RecName: Full=Proline--tRNA ligase;^Eukaryota; Fungi; Microsporidia; Unikaryonidae; Encephalitozoon`sp|A0Q2I3|SYP_CLONN^A0Q2I3^Q:229-733,H:15-478^43.87%ID^E:5e-117^RecName: Full=Proline--tRNA ligase;^Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium UniRef90_O60155^O60155^Q:18-733,H:1-716^100%ID^E:0^RecName: Full=Putative proline--tRNA ligase C19C7.06;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04073.10^YbaK^YbaK / prolyl-tRNA synthetases associated domain^50-172^E:2.1e-15`PF00587.20^tRNA-synt_2b^tRNA synthetase class II core domain (G, H, P, S and T)^264-408^E:5.5e-20`PF03129.15^HGTP_anticodon^Anticodon binding domain^517-615^E:5e-19`PF09180.6^ProRS-C_1^Prolyl-tRNA synthetase, C-terminal^643-733^E:1.1e-22 . . COG0442^Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS (By similarity) GO:0005737^cellular_component^cytoplasm`GO:0002161^molecular_function^aminoacyl-tRNA editing activity`GO:0005524^molecular_function^ATP binding`GO:0004827^molecular_function^proline-tRNA ligase activity`GO:0006433^biological_process^prolyl-tRNA aminoacylation GO:0002161^molecular_function^aminoacyl-tRNA editing activity`GO:0000166^molecular_function^nucleotide binding`GO:0004812^molecular_function^aminoacyl-tRNA ligase activity`GO:0005524^molecular_function^ATP binding`GO:0006418^biological_process^tRNA aminoacylation for protein translation`GO:0004827^molecular_function^proline-tRNA ligase activity`GO:0006433^biological_process^prolyl-tRNA aminoacylation`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7765-comp5462_c0 comp5462_c0_seq1 sp|P78965|GSHR_SCHPO^P78965^Q:222-1613,H:1-464^100%ID^E:0^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P78965^P78965^Q:222-1613,H:1-464^100%ID^E:0^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5675 132-1616[+] sp|Q873E8|GSHR_NEUCR^Q873E8^Q:31-493,H:1-467^56.17%ID^E:5e-149^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora`sp|P41921|GSHR_YEAST^P41921^Q:25-493,H:10-482^56.69%ID^E:2e-143^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q6HA23|GSHR_KLULA^Q6HA23^Q:31-493,H:16-483^57.42%ID^E:7e-141^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces`sp|Q6FRV2|GSHR_CANGA^Q6FRV2^Q:31-493,H:10-475^56.66%ID^E:2e-140^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; mitosporic Nakaseomyces`sp|Q6C5H4|GSHR_YARLI^Q6C5H4^Q:38-493,H:7-469^57.14%ID^E:4e-138^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia UniRef90_P78965^P78965^Q:31-494,H:1-464^100%ID^E:0^RecName: Full=Glutathione reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF01946.12^Thi4^Thi4 family^37-82^E:0.00011`PF07992.9^Pyr_redox_2^Pyridine nucleotide-disulphide oxidoreductase^39-348^E:2e-38`PF12831.2^FAD_oxidored^FAD dependent oxidoreductase^39-80^E:2.8e-09`PF00890.19^FAD_binding_2^FAD binding domain^39-75^E:3.2e-06`PF01266.19^DAO^FAD dependent oxidoreductase^39-75^E:2.7e-06`PF13738.1^Pyr_redox_3^Pyridine nucleotide-disulphide oxidoreductase^41-241^E:8.7e-11`PF01134.17^GIDA^Glucose inhibited division protein A^41-85^E:8.2e-05`PF13450.1^NAD_binding_8^NAD(P)-binding Rossmann-like domain^42-76^E:3e-06`PF00070.22^Pyr_redox^Pyridine nucleotide-disulphide oxidoreductase^210-270^E:9.1e-16`PF02852.17^Pyr_redox_dim^Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain^381-493^E:6.3e-31 . . COG1249^dihydrolipoyl dehydrogenase GO:0005739^cellular_component^mitochondrion`GO:0005634^cellular_component^nucleus`GO:0050660^molecular_function^flavin adenine dinucleotide binding`GO:0004362^molecular_function^glutathione-disulfide reductase activity`GO:0050661^molecular_function^NADP binding`GO:0045454^biological_process^cell redox homeostasis`GO:0034599^biological_process^cellular response to oxidative stress`GO:0006749^biological_process^glutathione metabolic process`GO:0010731^biological_process^protein glutathionylation GO:0016491^molecular_function^oxidoreductase activity`GO:0055114^biological_process^oxidation-reduction process`GO:0050660^molecular_function^flavin adenine dinucleotide binding`GO:0008033^biological_process^tRNA processing`GO:0045454^biological_process^cell redox homeostasis . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7904-comp5706_c0 comp5706_c0_seq1 sp|Q09172|PP2C2_SCHPO^Q09172^Q:73-1182,H:1-370^100%ID^E:0^RecName: Full=Protein phosphatase 2C homolog 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09172^Q09172^Q:73-1182,H:1-370^100%ID^E:0^RecName: Full=Protein phosphatase 2C homolog 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5807 73-1185[+] sp|P39966|PP2C2_YEAST^P39966^Q:1-324,H:1-322^49.08%ID^E:3e-82^RecName: Full=Protein phosphatase 2C homolog 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P49596|PP2C2_CAEEL^P49596^Q:1-295,H:1-290^49.49%ID^E:2e-80^RecName: Full=Probable protein phosphatase 2C T23F11.1;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis`sp|P34221|PP2C3_YEAST^P34221^Q:1-307,H:1-310^47.27%ID^E:8e-78^RecName: Full=Protein phosphatase 2C homolog 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|O81716|P2C21_ARATH^O81716^Q:1-291,H:1-329^42.43%ID^E:4e-68^RecName: Full=Probable protein phosphatase 2C 21;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9SZ53|P2C60_ARATH^Q9SZ53^Q:1-291,H:1-329^43.32%ID^E:9e-68^RecName: Full=Probable protein phosphatase 2C 60;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_Q09172^Q09172^Q:1-370,H:1-370^100%ID^E:0^RecName: Full=Protein phosphatase 2C homolog 2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00481.16^PP2C^Protein phosphatase 2C^23-276^E:3.1e-91 . . COG0631^Phosphatase GO:0046872^molecular_function^metal ion binding`GO:0005515^molecular_function^protein binding`GO:0004722^molecular_function^protein serine/threonine phosphatase activity`GO:0000077^biological_process^DNA damage checkpoint`GO:0030968^biological_process^endoplasmic reticulum unfolded protein response`GO:0000173^biological_process^inactivation of MAPK activity involved in osmosensory signaling pathway`GO:0006470^biological_process^protein dephosphorylation`GO:0000079^biological_process^regulation of cyclin-dependent protein serine/threonine kinase activity GO:0003824^molecular_function^catalytic activity . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:7905:comp5707_c0 comp5707_c0_seq1 sp|O59727|YHX7_SCHPO^O59727^Q:42-482,H:1-147^100%ID^E:2e-73^RecName: Full=Protein PBDC1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O59727^O59727^Q:42-482,H:1-147^100%ID^E:5e-72^RecName: Full=Protein PBDC1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5808 42-485[+] sp|Q08971|YP225_YEAST^Q08971^Q:4-144,H:2-142^53.9%ID^E:8e-39^RecName: Full=Protein PBDC1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q9BVG4|CX026_HUMAN^Q9BVG4^Q:6-144,H:24-158^38.85%ID^E:8e-24^RecName: Full=Protein PBDC1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_O59727^O59727^Q:1-147,H:1-147^100%ID^E:4e-80^RecName: Full=Protein PBDC1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04669.8^Polysacc_synt_4^Polysaccharide biosynthesis^17-145^E:2.9e-23 . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-7906-comp5710_c0 comp5710_c0_seq1 sp|Q9UR27|RM31_SCHPO^Q9UR27^Q:262-606,H:1-115^100%ID^E:1e-51^RecName: Full=54S ribosomal protein L31, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UR27^Q9UR27^Q:262-606,H:1-115^100%ID^E:4e-50^RecName: Full=54S ribosomal protein L31, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.5809 262-609[+] sp|P14063|RM31_YEAST^P14063^Q:1-115,H:1-131^36.76%ID^E:2e-14^RecName: Full=54S ribosomal protein L31, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_Q9UR27^Q9UR27^Q:1-115,H:1-115^100%ID^E:5e-62^RecName: Full=54S ribosomal protein L31, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF09784.4^L31^Mitochondrial ribosomal protein L31^8-115^E:8e-45 . . NOG87597^ GO:0005762^cellular_component^mitochondrial large ribosomal subunit`GO:0003735^molecular_function^structural constituent of ribosome`GO:0032543^biological_process^mitochondrial translation . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8114-comp6170_c0 comp6170_c0_seq1 sp|P78768|VTI1_SCHPO^P78768^Q:104-745,H:1-214^100%ID^E:4e-107^RecName: Full=Vesicle transport v-SNARE protein vti1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P78768^P78768^Q:104-745,H:1-214^100%ID^E:1e-105^RecName: Full=Vesicle transport v-SNARE protein vti1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6023 104-748[+] sp|Q04338|VTI1_YEAST^Q04338^Q:25-214,H:32-217^38.86%ID^E:8e-23^RecName: Full=t-SNARE VTI1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q96AJ9|VTI1A_HUMAN^Q96AJ9^Q:1-214,H:5-215^31.53%ID^E:2e-20^RecName: Full=Vesicle transport through interaction with t-SNAREs homolog 1A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q9SEL5|VTI12_ARATH^Q9SEL5^Q:1-213,H:5-220^31.08%ID^E:2e-19^RecName: Full=Vesicle transport v-SNARE 12;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q9JI51|VTI1A_RAT^Q9JI51^Q:1-213,H:5-220^31.51%ID^E:4e-19^RecName: Full=Vesicle transport through interaction with t-SNAREs homolog 1A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q9LVP9|VTI13_ARATH^Q9LVP9^Q:1-213,H:5-219^29.15%ID^E:4e-18^RecName: Full=Vesicle transport v-SNARE 13;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis UniRef90_P78768^P78768^Q:1-214,H:1-214^100%ID^E:6e-118^RecName: Full=Vesicle transport v-SNARE protein vti1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05008.10^V-SNARE^Vesicle transport v-SNARE protein N-terminus^8-82^E:4.2e-18`PF12352.3^V-SNARE_C^Snare region anchored in the vesicle membrane C-terminus^123-186^E:3.6e-20 . ExpAA=21.92^PredHel=1^Topology=i187-209o . GO:0030173^cellular_component^integral component of Golgi membrane`GO:0031902^cellular_component^late endosome membrane`GO:0031201^cellular_component^SNARE complex`GO:0005515^molecular_function^protein binding`GO:0005484^molecular_function^SNAP receptor activity`GO:0006896^biological_process^Golgi to vacuole transport`GO:0006891^biological_process^intra-Golgi vesicle-mediated transport`GO:0006886^biological_process^intracellular protein transport`GO:0042144^biological_process^vacuole fusion, non-autophagic`GO:0006906^biological_process^vesicle fusion GO:0006886^biological_process^intracellular protein transport`GO:0016020^cellular_component^membrane . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8115:comp6172_c0 comp6172_c0_seq1 sp|O74821|DRE2_SCHPO^O74821^Q:431-1264,H:11-288^100%ID^E:3e-148^RecName: Full=Fe-S cluster assembly protein dre2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74821^O74821^Q:431-1264,H:11-288^100%ID^E:9e-147^RecName: Full=Fe-S cluster assembly protein dre2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6024 401-1267[+] sp|B6JVP0|DRE2_SCHJY^B6JVP0^Q:3-288,H:2-309^49.19%ID^E:1e-70^RecName: Full=Fe-S cluster assembly protein dre2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|A1D3K3|DRE2_NEOFI^A1D3K3^Q:29-277,H:28-316^35.93%ID^E:2e-36^RecName: Full=Fe-S cluster assembly protein dre2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Neosartorya`sp|A2QEP2|DRE2_ASPNC^A2QEP2^Q:2-277,H:31-320^34.11%ID^E:8e-36^RecName: Full=Fe-S cluster assembly protein dre2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus`sp|Q1DR42|DRE2_COCIM^Q1DR42^Q:5-277,H:4-317^33.33%ID^E:1e-34^RecName: Full=Fe-S cluster assembly protein DRE2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; mitosporic Onygenales; Coccidioides`sp|C5P664|DRE2_COCP7^C5P664^Q:5-277,H:4-317^33.33%ID^E:1e-34^RecName: Full=Fe-S cluster assembly protein DRE2;^Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; mitosporic Onygenales; Coccidioides UniRef90_O74821^O74821^Q:1-288,H:1-288^100%ID^E:3e-167^RecName: Full=Fe-S cluster assembly protein dre2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05093.8^CIAPIN1^Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis^177-273^E:1e-34 . . . GO:0005758^cellular_component^mitochondrial intermembrane space`GO:0051537^molecular_function^2 iron, 2 sulfur cluster binding`GO:0009055^molecular_function^electron carrier activity`GO:0046872^molecular_function^metal ion binding`GO:0006915^biological_process^apoptotic process`GO:0010421^biological_process^hydrogen peroxide-mediated programmed cell death`GO:0016226^biological_process^iron-sulfur cluster assembly`GO:0043066^biological_process^negative regulation of apoptotic process GO:0051536^molecular_function^iron-sulfur cluster binding`GO:0016226^biological_process^iron-sulfur cluster assembly`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8116:comp6174_c0 comp6174_c0_seq1 sp|Q09787|YA99_SCHPO^Q09787^Q:113-934,H:1-274^100%ID^E:1e-146^RecName: Full=Uncharacterized protein C13G6.09;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09787^Q09787^Q:113-934,H:1-274^100%ID^E:4e-145^RecName: Full=Uncharacterized protein C13G6.09;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6025 113-937[+] sp|P47816|PDCD2_RAT^P47816^Q:79-267,H:157-341^30.41%ID^E:2e-16^RecName: Full=Programmed cell death protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus`sp|Q16342|PDCD2_HUMAN^Q16342^Q:79-267,H:158-342^29.53%ID^E:4e-16^RecName: Full=Programmed cell death protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q2YDC9|PDCD2_BOVIN^Q2YDC9^Q:155-267,H:234-342^37.39%ID^E:2e-15^RecName: Full=Programmed cell death protein 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q5ZID2|PDD2L_CHICK^Q5ZID2^Q:149-248,H:255-354^38.46%ID^E:1e-09^RecName: Full=Programmed cell death protein 2-like;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q9BRP1|PDD2L_HUMAN^Q9BRP1^Q:158-263,H:246-349^32.41%ID^E:8e-07^RecName: Full=Programmed cell death protein 2-like;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo UniRef90_Q09787^Q09787^Q:1-274,H:1-274^100%ID^E:4e-160^RecName: Full=Uncharacterized protein C13G6.09;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04194.8^PDCD2_C^Programmed cell death protein 2, C-terminal putative domain^118-264^E:8.2e-31 . . . GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0003677^molecular_function^DNA binding`GO:0046872^molecular_function^metal ion binding`GO:0006915^biological_process^apoptotic process`GO:0012501^biological_process^programmed cell death GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8117-comp6178_c0 comp6178_c0_seq1 sp|O94504|TRX2_SCHPO^O94504^Q:84-482,H:1-133^100%ID^E:4e-70^RecName: Full=Thioredoxin-2, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94504^O94504^Q:84-482,H:1-133^100%ID^E:1e-68^RecName: Full=Thioredoxin-2, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6026 84-485[+] sp|P22217|TRX1_YEAST^P22217^Q:31-129,H:2-100^42.42%ID^E:1e-21^RecName: Full=Thioredoxin-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P22803|TRX2_YEAST^P22803^Q:31-129,H:2-101^40%ID^E:1e-19^RecName: Full=Thioredoxin-2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q7KQL8|THIO_PLAF7^Q7KQL8^Q:31-131,H:2-102^35.64%ID^E:1e-17^RecName: Full=Thioredoxin;^Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Laverania)`sp|O17486|THIO_ECHGR^O17486^Q:44-128,H:19-103^40%ID^E:8e-17^RecName: Full=Thioredoxin;^Eukaryota; Metazoa; Platyhelminthes; Cestoda; Eucestoda; Cyclophyllidea; Taeniidae; Echinococcus`sp|Q9UW02|THIO_COPCM^Q9UW02^Q:31-130,H:2-103^34.31%ID^E:5e-16^RecName: Full=Thioredoxin;^Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Agaricaceae; Coprinus UniRef90_O94504^O94504^Q:1-133,H:1-133^100%ID^E:9e-73^RecName: Full=Thioredoxin-2, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00085.15^Thioredoxin^Thioredoxin^39-129^E:5.1e-24`PF08534.5^Redoxin^Redoxin^45-88^E:9.2e-06`PF13098.1^Thioredoxin_2^Thioredoxin-like domain^47-119^E:4.1e-07`PF13905.1^Thioredoxin_8^Thioredoxin-like^48-90^E:1.9e-07 . . COG0526^Thioredoxin GO:0005829^cellular_component^cytosol`GO:0000324^cellular_component^fungal-type vacuole`GO:0000139^cellular_component^Golgi membrane`GO:0005758^cellular_component^mitochondrial intermembrane space`GO:0005634^cellular_component^nucleus`GO:0015036^molecular_function^disulfide oxidoreductase activity`GO:0015035^molecular_function^protein disulfide oxidoreductase activity`GO:0045454^biological_process^cell redox homeostasis`GO:0034599^biological_process^cellular response to oxidative stress`GO:0009263^biological_process^deoxyribonucleotide biosynthetic process`GO:0006888^biological_process^ER to Golgi vesicle-mediated transport`GO:0006662^biological_process^glycerol ether metabolic process`GO:0080058^biological_process^protein deglutathionylation`GO:0015031^biological_process^protein transport`GO:0006890^biological_process^retrograde vesicle-mediated transport, Golgi to ER`GO:0042144^biological_process^vacuole fusion, non-autophagic`GO:0000011^biological_process^vacuole inheritance GO:0045454^biological_process^cell redox homeostasis`GO:0016491^molecular_function^oxidoreductase activity . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8151-comp6280_c0 comp6280_c0_seq1 sp|O60110|OCA3_SCHPO^O60110^Q:175-1020,H:1-282^100%ID^E:1e-162^RecName: Full=TPR repeat protein oca3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60110^O60110^Q:175-1020,H:1-282^100%ID^E:3e-161^RecName: Full=TPR repeat protein oca3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6060 175-1023[+] sp|Q8AVU9|EMC2B_XENLA^Q8AVU9^Q:11-218,H:28-232^31.9%ID^E:2e-26^RecName: Full=ER membrane protein complex subunit 2-B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q5E993|EMC2_BOVIN^Q5E993^Q:11-218,H:28-232^33.33%ID^E:4e-26^RecName: Full=ER membrane protein complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q6INS3|EMC2A_XENLA^Q6INS3^Q:11-218,H:28-232^31.43%ID^E:4e-26^RecName: Full=ER membrane protein complex subunit 2-A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q5M7J9|EMC2_XENTR^Q5M7J9^Q:11-218,H:28-232^31.43%ID^E:4e-26^RecName: Full=ER membrane protein complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q6TGY8|EMC2_DANRE^Q6TGY8^Q:11-218,H:28-232^32.86%ID^E:5e-26^RecName: Full=ER membrane protein complex subunit 2;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio UniRef90_O60110^O60110^Q:1-282,H:1-282^100%ID^E:5e-165^RecName: Full=TPR repeat protein oca3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF13181.1^TPR_8^Tetratricopeptide repeat^140-164^E:0.54 . . . GO:0005737^cellular_component^cytoplasm`GO:0005783^cellular_component^endoplasmic reticulum`GO:0072546^cellular_component^ER membrane protein complex`GO:0005634^cellular_component^nucleus GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8152:comp6287_c0 comp6287_c0_seq1 sp|P87055|YDJ7_SCHPO^P87055^Q:70-1002,H:1-311^100%ID^E:2e-172^RecName: Full=Uncharacterized protein C57A10.07;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P87055^P87055^Q:70-1002,H:1-311^100%ID^E:5e-171^RecName: Full=Uncharacterized protein C57A10.07;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6061 70-1005[+] sp|Q08634|YO238_YEAST^Q08634^Q:77-311,H:5-298^32.77%ID^E:2e-30^RecName: Full=Uncharacterized protein YOR238W;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_P87055^P87055^Q:1-311,H:1-311^100%ID^E:0^RecName: Full=Uncharacterized protein C57A10.07;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . ExpAA=21.43^PredHel=1^Topology=i34-56o . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8153-comp6291_c0 comp6291_c0_seq1 sp|O74860|YQ9A_SCHPO^O74860^Q:1096-578,H:160-332^100%ID^E:4e-94^RecName: Full=Putative pyridoxal kinase C18.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74860^O74860^Q:1096-578,H:160-332^100%ID^E:1e-92^RecName: Full=Putative pyridoxal kinase C18.10;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6062 270-599[+] sp|Q10661|DPY30_CAEEL^Q10661^Q:2-43,H:65-106^54.76%ID^E:3e-09^RecName: Full=Dosage compensation protein dpy-30;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis`sp|Q9C005|DPY30_HUMAN^Q9C005^Q:4-47,H:50-93^47.73%ID^E:5e-07^RecName: Full=Protein dpy-30 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q2NKU6|DPY30_BOVIN^Q2NKU6^Q:4-47,H:50-93^47.73%ID^E:5e-07^RecName: Full=Protein dpy-30 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos`sp|Q8K3E7|DPY30_RAT^Q8K3E7^Q:4-47,H:50-93^47.73%ID^E:1e-06^RecName: Full=Protein dpy-30 homolog;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus UniRef90_O74861^O74861^Q:1-109,H:1-109^100%ID^E:5e-55^RecName: Full=Set1 complex component sdc1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05186.8^Dpy-30^Dpy-30 motif^6-46^E:1e-18 . . . GO:0005634^cellular_component^nucleus`GO:0042464^biological_process^dosage compensation by hypoactivation of X chromosome`GO:0040011^biological_process^locomotion`GO:0040014^biological_process^regulation of multicellular organism growth`GO:0045138^biological_process^tail tip morphogenesis . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8201-comp6425_c0 comp6425_c0_seq1 sp|O74802|HIBCH_SCHPO^O74802^Q:60-1316,H:1-419^100%ID^E:0^RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74802^O74802^Q:60-1316,H:1-419^100%ID^E:0^RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6106 3-1319[+] sp|Q9LKJ1|HIBC1_ARATH^Q9LKJ1^Q:72-418,H:6-354^39.04%ID^E:3e-66^RecName: Full=3-hydroxyisobutyryl-CoA hydrolase 1;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q1PEY5|HIBC2_ARATH^Q1PEY5^Q:72-418,H:2-350^37.78%ID^E:9e-64^RecName: Full=Probable 3-hydroxyisobutyryl-CoA hydrolase 2;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q6NMB0|HIBC3_ARATH^Q6NMB0^Q:72-412,H:2-342^38.79%ID^E:1e-63^RecName: Full=Probable 3-hydroxyisobutyryl-CoA hydrolase 3;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis`sp|Q58EB4|HIBCH_DANRE^Q58EB4^Q:70-405,H:27-358^39.53%ID^E:5e-63^RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitochondrial;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q5ZJ60|HIBCH_CHICK^Q5ZJ60^Q:71-418,H:31-376^38.24%ID^E:9e-59^RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitochondrial;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus UniRef90_O74802^O74802^Q:20-438,H:1-419^100%ID^E:0^RecName: Full=3-hydroxyisobutyryl-CoA hydrolase, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00378.15^ECH^Enoyl-CoA hydratase/isomerase family^79-390^E:9.5e-26`PF13766.1^ECH_C^2-enoyl-CoA Hydratase C-terminal region^302-405^E:1.2e-25 . . COG1024^Enoyl-CoA hydratase GO:0005777^cellular_component^peroxisome`GO:0003860^molecular_function^3-hydroxyisobutyryl-CoA hydrolase activity`GO:0009409^biological_process^response to cold`GO:0006574^biological_process^valine catabolic process GO:0003824^molecular_function^catalytic activity`GO:0008152^biological_process^metabolic process . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8202:comp6438_c0 comp6438_c0_seq1 sp|Q9USM1|ADRM1_SCHPO^Q9USM1^Q:72-1235,H:1-388^100%ID^E:0^RecName: Full=Probable proteasomal ubiquitin receptor ADRM1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9USM1^Q9USM1^Q:72-1235,H:1-388^100%ID^E:0^RecName: Full=Probable proteasomal ubiquitin receptor ADRM1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6107 72-1238[+] sp|Q6NZ09|ADRM1_DANRE^Q6NZ09^Q:17-132,H:20-130^47.41%ID^E:8e-26^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q6P877|ADRM1_XENTR^Q6P877^Q:17-132,H:20-130^47.41%ID^E:1e-25^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q6GN67|ADM1A_XENLA^Q6GN67^Q:17-132,H:20-130^47.41%ID^E:1e-25^RecName: Full=Proteasomal ubiquitin receptor ADRM1-A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q98SH3|ADRM1_CHICK^Q98SH3^Q:17-132,H:21-131^47.41%ID^E:2e-25^RecName: Full=Proteasomal ubiquitin receptor ADRM1;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Testudines + Archosauria group; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galliformes; Phasianidae; Phasianinae; Gallus`sp|Q7ZXD6|ADM1B_XENLA^Q7ZXD6^Q:17-132,H:20-130^46.55%ID^E:3e-25^RecName: Full=Proteasomal ubiquitin receptor ADRM1-B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus UniRef90_Q9USM1^Q9USM1^Q:1-388,H:1-388^100%ID^E:0^RecName: Full=Probable proteasomal ubiquitin receptor ADRM1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04683.8^Proteasom_Rpn13^Proteasome complex subunit Rpn13 ubiquitin receptor^26-112^E:1.9e-28 . . . GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0000502^cellular_component^proteasome complex`GO:0061133^molecular_function^endopeptidase activator activity`GO:0010950^biological_process^positive regulation of endopeptidase activity`GO:0043248^biological_process^proteasome assembly GO:0005634^cellular_component^nucleus`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8203-comp6442_c0 comp6442_c0_seq1 sp|Q9UTK3|NPT1_SCHPO^Q9UTK3^Q:357-1586,H:1-410^99.76%ID^E:0^RecName: Full=Probable nicotinate phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UTK3^Q9UTK3^Q:357-1586,H:1-410^99.76%ID^E:0^RecName: Full=Probable nicotinate phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6108 357-1589[+] sp|P39683|NPT1_YEAST^P39683^Q:1-405,H:1-412^45.67%ID^E:5e-98^RecName: Full=Nicotinate phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q8PSJ3|PNCB_METMA^Q8PSJ3^Q:6-403,H:2-397^40.95%ID^E:2e-75^RecName: Full=Nicotinate phosphoribosyltransferase;^Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina`sp|Q8TMW6|PNCB_METAC^Q8TMW6^Q:6-403,H:2-395^40.72%ID^E:3e-74^RecName: Full=Nicotinate phosphoribosyltransferase;^Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina`sp|Q12Z05|PNCB_METBU^Q12Z05^Q:6-403,H:2-394^38.55%ID^E:3e-70^RecName: Full=Nicotinate phosphoribosyltransferase;^Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanococcoides`sp|C0QFM5|PNCB_DESAH^C0QFM5^Q:6-394,H:2-374^37.03%ID^E:1e-65^RecName: Full=Nicotinate phosphoribosyltransferase;^Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium UniRef90_Q9UTK3^Q9UTK3^Q:1-410,H:1-410^99.76%ID^E:0^RecName: Full=Probable nicotinate phosphoribosyltransferase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04095.11^NAPRTase^Nicotinate phosphoribosyltransferase (NAPRTase) family^165-407^E:1e-72 . . COG1488^Nicotinate phosphoribosyltransferase GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0016874^molecular_function^ligase activity`GO:0004516^molecular_function^nicotinate phosphoribosyltransferase activity`GO:0004514^molecular_function^nicotinate-nucleotide diphosphorylase (carboxylating) activity`GO:0005515^molecular_function^protein binding`GO:0000183^biological_process^chromatin silencing at rDNA`GO:0006348^biological_process^chromatin silencing at telomere`GO:0009435^biological_process^NAD biosynthetic process`GO:0019358^biological_process^nicotinate nucleotide salvage`GO:0001302^biological_process^replicative cell aging . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8223-comp6520_c0 comp6520_c0_seq1 sp|O60172|PPA3_SCHPO^O60172^Q:303-1691,H:1-463^100%ID^E:0^RecName: Full=Thiamine-repressible acid phosphatase SPBC21H7.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60172^O60172^Q:303-1691,H:1-463^100%ID^E:0^RecName: Full=Thiamine-repressible acid phosphatase SPBC21H7.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6128 303-1694[+] sp|P52291|PPA1_PICPA^P52291^Q:34-419,H:48-423^29.06%ID^E:4e-37^RecName: Full=Acid phosphatase PHO1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Komagataella`sp|P24031|PPA3_YEAST^P24031^Q:36-463,H:41-453^28.06%ID^E:3e-34^RecName: Full=Constitutive acid phosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P35842|PPAB_YEAST^P35842^Q:36-463,H:41-453^26.65%ID^E:1e-32^RecName: Full=Acid phosphatase PHO11;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P38693|PPAC_YEAST^P38693^Q:36-463,H:41-453^26.77%ID^E:1e-32^RecName: Full=Acid phosphatase PHO12;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P00635|PPA5_YEAST^P00635^Q:36-463,H:41-453^26.73%ID^E:7e-31^RecName: Full=Repressible acid phosphatase;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O60172^O60172^Q:1-463,H:1-463^100%ID^E:0^RecName: Full=Thiamine-repressible acid phosphatase SPBC21H7.03c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00328.17^His_Phos_2^Histidine phosphatase superfamily (branch 2)^59-405^E:7.9e-53 sigP:1^18^0.886^YES . . GO:0003993^molecular_function^acid phosphatase activity`GO:0006950^biological_process^response to stress GO:0003993^molecular_function^acid phosphatase activity . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8224:comp6536_c0 comp6536_c0_seq1 sp|Q1MTR3|VID27_SCHPO^Q1MTR3^Q:68-2470,H:1-801^100%ID^E:0^RecName: Full=Vacuolar import and degradation protein 27;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q1MTR3^Q1MTR3^Q:68-2470,H:1-801^100%ID^E:0^RecName: Full=Vacuolar import and degradation protein 27;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6129 68-2473[+] sp|P40157|VID27_YEAST^P40157^Q:16-780,H:12-768^31.99%ID^E:1e-107^RecName: Full=Vacuolar import and degradation protein 27;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q555V7|VID27_DICDI^Q555V7^Q:423-772,H:578-937^36.73%ID^E:1e-60^RecName: Full=VID27-like protein;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium`sp|P40781|CYPR4_CYNCA^P40781^Q:483-738,H:164-437^32.29%ID^E:1e-25^RecName: Full=Protein CYPRO4;^Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara UniRef90_Q1MTR3^Q1MTR3^Q:1-801,H:1-801^100%ID^E:0^RecName: Full=Vacuolar import and degradation protein 27;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF08553.5^VID27^VID27 cytoplasmic protein^1-800^E:6.3e-281 . . COG5167^vacuolar import and degradation protein GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8225-comp6537_c0 comp6537_c0_seq1 sp|Q9Y7M6|RRP1_SCHPO^Q9Y7M6^Q:34-684,H:1-217^100%ID^E:2e-125^RecName: Full=Ribosomal RNA-processing protein 1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9Y7M6^Q9Y7M6^Q:34-684,H:1-217^100%ID^E:5e-124^RecName: Full=Ribosomal RNA-processing protein 1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6130 1-687[+] sp|Q14684|RRP1B_HUMAN^Q14684^Q:18-197,H:12-192^36.41%ID^E:3e-26^RecName: Full=Ribosomal RNA processing protein 1 homolog B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P56182|RRP1_HUMAN^P56182^Q:18-197,H:13-193^36.56%ID^E:3e-25^RecName: Full=Ribosomal RNA processing protein 1 homolog A;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|P35178|RRP1_YEAST^P35178^Q:16-179,H:4-180^34.81%ID^E:5e-19^RecName: Full=Ribosomal RNA-processing protein 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|Q18674|RRP1_CAEEL^Q18674^Q:13-180,H:7-174^32.95%ID^E:3e-16^RecName: Full=Ribosomal RNA processing protein 1 homolog;^Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis`sp|Q54WY5|RRP1_DICDI^Q54WY5^Q:20-220,H:29-247^27.73%ID^E:4e-15^RecName: Full=Ribosomal RNA processing protein 1 homolog;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_Q9Y7M6^Q9Y7M6^Q:12-228,H:1-217^100%ID^E:6e-124^RecName: Full=Ribosomal RNA-processing protein 1 homolog;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF05997.7^Nop52^Nucleolar protein,Nop52^16-216^E:1.5e-64 . . . GO:0005829^cellular_component^cytosol`GO:0000791^cellular_component^euchromatin`GO:0000792^cellular_component^heterochromatin`GO:0005730^cellular_component^nucleolus`GO:0005634^cellular_component^nucleus`GO:0030688^cellular_component^preribosome, small subunit precursor`GO:0044822^molecular_function^poly(A) RNA binding`GO:0010923^biological_process^negative regulation of phosphatase activity`GO:0006364^biological_process^rRNA processing GO:0006364^biological_process^rRNA processing`GO:0030688^cellular_component^preribosome, small subunit precursor . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8288-comp6796_c0 comp6796_c0_seq1 sp|O14216|SLD2_SCHPO^O14216^Q:231-1205,H:1-325^100%ID^E:2e-176^RecName: Full=DNA replication regulator sld2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14216^O14216^Q:231-1205,H:1-325^100%ID^E:6e-175^RecName: Full=DNA replication regulator sld2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6187 231-1244[+] sp|Q59UH5|SLD2_CANAL^Q59UH5^Q:10-269,H:3-280^27.92%ID^E:3e-07^RecName: Full=DNA replication regulator SLD2;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida UniRef90_O14216^O14216^Q:1-337,H:1-337^100%ID^E:0^RecName: Full=DNA replication regulator sld2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF11719.3^Drc1-Sld2^DNA replication and checkpoint protein^10-164^E:1.2e-35`PF11719.3^Drc1-Sld2^DNA replication and checkpoint protein^172-334^E:5.1e-18 . . NOG85869^ GO:0005737^cellular_component^cytoplasm`GO:0005634^cellular_component^nucleus`GO:0007049^biological_process^cell cycle`GO:0006260^biological_process^DNA replication . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8289:comp6797_c0 comp6797_c0_seq1 sp|Q9UT85|YIPC_SCHPO^Q9UT85^Q:199-1719,H:1-507^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C343.04c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UT85^Q9UT85^Q:199-1719,H:1-507^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C343.04c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6188 199-1722[+] sp|Q9H7D7|WDR26_HUMAN^Q9H7D7^Q:10-499,H:126-642^32.83%ID^E:1e-66^RecName: Full=WD repeat-containing protein 26;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo`sp|Q28D01|WDR26_XENTR^Q28D01^Q:10-499,H:70-595^31.97%ID^E:1e-65^RecName: Full=WD repeat-containing protein 26;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana`sp|Q5SP67|WDR26_DANRE^Q5SP67^Q:10-499,H:54-554^33.07%ID^E:1e-65^RecName: Full=WD repeat-containing protein 26;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio`sp|Q8YRI1|YY46_NOSS1^Q8YRI1^Q:203-501,H:1190-1482^26.97%ID^E:2e-25^RecName: Full=Uncharacterized WD repeat-containing protein alr3466;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YTC2|Y2800_NOSS1^Q8YTC2^Q:212-499,H:725-1006^28.67%ID^E:4e-25^RecName: Full=Uncharacterized WD repeat-containing protein alr2800;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YRI1|YY46_NOSS1^Q8YRI1^Q:206-498,H:1025-1311^26.76%ID^E:8e-25^RecName: Full=Uncharacterized WD repeat-containing protein alr3466;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YTC2|Y2800_NOSS1^Q8YTC2^Q:208-501,H:931-1218^29.1%ID^E:2e-23^RecName: Full=Uncharacterized WD repeat-containing protein alr2800;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YRI1|YY46_NOSS1^Q8YRI1^Q:113-498,H:787-1143^23.53%ID^E:4e-22^RecName: Full=Uncharacterized WD repeat-containing protein alr3466;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YTC2|Y2800_NOSS1^Q8YTC2^Q:208-501,H:637-924^25.5%ID^E:3e-17^RecName: Full=Uncharacterized WD repeat-containing protein alr2800;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YRI1|YY46_NOSS1^Q8YRI1^Q:203-426,H:1274-1495^25.76%ID^E:3e-15^RecName: Full=Uncharacterized WD repeat-containing protein alr3466;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc`sp|Q8YTC2|Y2800_NOSS1^Q8YTC2^Q:206-466,H:1013-1226^23.57%ID^E:7e-12^RecName: Full=Uncharacterized WD repeat-containing protein alr2800;^Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc UniRef90_Q9UT85^Q9UT85^Q:1-507,H:1-507^100%ID^E:0^RecName: Full=Uncharacterized WD repeat-containing protein C343.04c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00400.27^WD40^WD domain, G-beta repeat^206-241^E:3.5e-08`PF00400.27^WD40^WD domain, G-beta repeat^248-283^E:7e-09`PF00400.27^WD40^WD domain, G-beta repeat^293-324^E:2.7e-05`PF00400.27^WD40^WD domain, G-beta repeat^384-456^E:0.011`PF00400.27^WD40^WD domain, G-beta repeat^460-499^E:6.7e-08 . . COG2319^repeat-containing protein GO:0005737^cellular_component^cytoplasm GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8290-comp6800_c0 comp6800_c0_seq1 sp|Q9USR9|CENPC_SCHPO^Q9USR9^Q:984-715,H:518-607^97.78%ID^E:1e-62^RecName: Full=Centromere protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|Q9USR9|CENPC_SCHPO^Q9USR9^Q:643-527,H:605-643^100%ID^E:1e-62^RecName: Full=Centromere protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9USR9^Q9USR9^Q:984-715,H:518-607^97.78%ID^E:3e-61^RecName: Full=Centromere protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_Q9USR9^Q9USR9^Q:643-527,H:605-643^100%ID^E:3e-61^RecName: Full=Centromere protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6189 110-412[+] sp|P19956|RM44_YEAST^P19956^Q:1-99,H:1-96^36.36%ID^E:2e-09^RecName: Full=54S ribosomal protein L44, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces`sp|P62507|RM44_ASHGO^P62507^Q:1-99,H:1-96^29%ID^E:1e-06^RecName: Full=54S ribosomal protein L44, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium UniRef90_P62506^P62506^Q:1-100,H:1-100^100%ID^E:4e-49^RecName: Full=54S ribosomal protein L44, mitochondrial;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF10780.4^MRP_L53^39S ribosomal protein L53/MRP-L53^14-66^E:2.8e-16 . . NOG39177^Ephrin GO:0005762^cellular_component^mitochondrial large ribosomal subunit`GO:0003735^molecular_function^structural constituent of ribosome`GO:0032543^biological_process^mitochondrial translation . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8358-comp7118_c0 comp7118_c0_seq1 sp|O14259|YFP2_SCHPO^O14259^Q:97-1341,H:1-415^100%ID^E:0^RecName: Full=Ubp4-interactor sfp47;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O14259^O14259^Q:97-1341,H:1-415^100%ID^E:0^RecName: Full=Ubp4-interactor sfp47;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6244 97-1344[+] sp|Q6GM14|DBNLB_XENLA^Q6GM14^Q:357-414,H:322-376^44.83%ID^E:5e-08^RecName: Full=Drebrin-like protein B;^Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus`sp|Q75JD4|Y1676_DICDI^Q75JD4^Q:357-410,H:411-463^46.3%ID^E:1e-07^RecName: Full=SH3 and FCH domain-containing protein DDB_G0271676;^Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium UniRef90_O14259^O14259^Q:1-415,H:1-415^100%ID^E:0^RecName: Full=Ubp4-interactor sfp47;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF00611.18^FCH^Fes/CIP4, and EFC/F-BAR homology domain^14-77^E:7.2e-05`PF07653.12^SH3_2^Variant SH3 domain^356-412^E:2.7e-09`PF00018.23^SH3_1^SH3 domain^358-407^E:1.7e-11 . . . GO:0005938^cellular_component^cell cortex`GO:0030054^cellular_component^cell junction`GO:0030665^cellular_component^clathrin-coated vesicle membrane`GO:0005829^cellular_component^cytosol`GO:0000139^cellular_component^Golgi membrane`GO:0030027^cellular_component^lamellipodium`GO:0005886^cellular_component^plasma membrane`GO:0002102^cellular_component^podosome`GO:0001726^cellular_component^ruffle`GO:0045202^cellular_component^synapse`GO:0006810^biological_process^transport GO:0005515^molecular_function^protein binding . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8359:comp7126_c0 comp7126_c0_seq1 sp|O74854|POF6_SCHPO^O74854^Q:15-2618,H:1-868^100%ID^E:0^RecName: Full=F-box protein pof6;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O74854^O74854^Q:15-2618,H:1-868^100%ID^E:0^RecName: Full=F-box protein pof6;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6245 15-2633[+] sp|P39531|RCY1_YEAST^P39531^Q:399-872,H:349-840^29.17%ID^E:2e-51^RecName: Full=Recyclin-1;^Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces UniRef90_O74854^O74854^Q:1-872,H:1-872^100%ID^E:0^RecName: Full=F-box protein pof6;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF12937.2^F-box-like^F-box-like^37-70^E:8e-06`PF00646.28^F-box^F-box domain^39-74^E:0.0001`PF07393.6^Sec10^Exocyst complex component Sec10^179-861^E:3.3e-69 . . . GO:0051286^cellular_component^cell tip`GO:0005935^cellular_component^cellular bud neck`GO:0005768^cellular_component^endosome`GO:0005794^cellular_component^Golgi apparatus`GO:0030427^cellular_component^site of polarized growth`GO:0000149^molecular_function^SNARE binding`GO:0034498^biological_process^early endosome to Golgi transport`GO:0032456^biological_process^endocytic recycling`GO:0006897^biological_process^endocytosis`GO:0006887^biological_process^exocytosis`GO:0015031^biological_process^protein transport`GO:0048278^biological_process^vesicle docking GO:0005515^molecular_function^protein binding`GO:0006887^biological_process^exocytosis`GO:0048278^biological_process^vesicle docking`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8360-comp7132_c0 comp7132_c0_seq1 sp|O59733|SYF2_SCHPO^O59733^Q:617-3,H:23-227^100%ID^E:4e-102^RecName: Full=Pre-mRNA-splicing factor syf2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`sp|O59733|SYF2_SCHPO^O59733^Q:732-667,H:1-22^100%ID^E:4e-102^RecName: Full=Pre-mRNA-splicing factor syf2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O59733^O59733^Q:617-3,H:23-227^100%ID^E:1e-100^RecName: Full=Pre-mRNA-splicing factor syf2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces`UniRef90_O59733^O59733^Q:732-667,H:1-22^100%ID^E:1e-100^RecName: Full=Pre-mRNA-splicing factor syf2;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . NOG147890^ GO:0000974^cellular_component^Prp19 complex`GO:0005681^cellular_component^spliceosomal complex`GO:0007127^biological_process^meiosis I`GO:0045292^biological_process^mRNA cis splicing, via spliceosome . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8767-comp13796_c0 comp13796_c0_seq1 sp|Q9P6R2|YOH8_SCHPO^Q9P6R2^Q:428-3,H:280-421^100%ID^E:1e-52^RecName: Full=Uncharacterized protein C13E7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9P6R2^Q9P6R2^Q:428-3,H:280-421^100%ID^E:6e-51^RecName: Full=Uncharacterized protein C13E7.08c;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . NOG130430^NmrA-like family GO:0016593^cellular_component^Cdc73/Paf1 complex`GO:0005634^cellular_component^nucleus`GO:0003723^molecular_function^RNA binding`GO:0006368^biological_process^transcription elongation from RNA polymerase II promoter . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:8768:comp13802_c0 comp13802_c0_seq1 sp|Q09857|YAF3_SCHPO^Q09857^Q:1-333,H:574-660^65.77%ID^E:7e-28^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q09857^Q09857^Q:1-333,H:574-660^65.77%ID^E:3e-26^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . m.6444 1-336[+] . UniRef90_Q09857^Q09857^Q:1-111,H:574-660^64.04%ID^E:3e-27^RecName: Full=Intracellular protein transport protein uso1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces PF04869.9^Uso1_p115_head^Uso1 / p115 like vesicle tethering protein, head region^2-60^E:7.2e-10 . . . . GO:0006886^biological_process^intracellular protein transport`GO:0048280^biological_process^vesicle fusion with Golgi apparatus`GO:0000139^cellular_component^Golgi membrane`GO:0005737^cellular_component^cytoplasm . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-8769-comp13808_c0 comp13808_c0_seq1 sp|O60105|PUR8_SCHPO^O60105^Q:457-2,H:152-303^100%ID^E:2e-83^RecName: Full=Adenylosuccinate lyase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O60105^O60105^Q:457-2,H:152-303^100%ID^E:5e-82^RecName: Full=Adenylosuccinate lyase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . COG0015^adenylosuccinate lyase GO:0005829^cellular_component^cytosol`GO:0005634^cellular_component^nucleus`GO:0070626^molecular_function^(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity`GO:0004018^molecular_function^N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity`GO:0044208^biological_process^'de novo' AMP biosynthetic process`GO:0006189^biological_process^'de novo' IMP biosynthetic process`GO:0071585^biological_process^detoxification of cadmium ion`GO:0006106^biological_process^fumarate metabolic process`GO:0070814^biological_process^hydrogen sulfide biosynthetic process . . .
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trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-9315-comp38670_c0 comp38670_c0_seq1 sp|P39750|FEN1_SCHPO^P39750^Q:209-3,H:223-291^100%ID^E:9e-36^RecName: Full=Flap endonuclease 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_P39750^P39750^Q:209-3,H:223-291^100%ID^E:4e-34^RecName: Full=Flap endonuclease 1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . COG0258^Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA (By similarity) GO:0005739^cellular_component^mitochondrion`GO:0043596^cellular_component^nuclear replication fork`GO:0005730^cellular_component^nucleolus`GO:0005654^cellular_component^nucleoplasm`GO:0005634^cellular_component^nucleus`GO:0035861^cellular_component^site of double-strand break`GO:0017108^molecular_function^5'-flap endonuclease activity`GO:0003677^molecular_function^DNA binding`GO:0000287^molecular_function^magnesium ion binding`GO:0005515^molecular_function^protein binding`GO:0045145^molecular_function^single-stranded DNA 5'-3' exodeoxyribonuclease activity`GO:0006284^biological_process^base-excision repair`GO:0000737^biological_process^DNA catabolic process, endonucleolytic`GO:0000738^biological_process^DNA catabolic process, exonucleolytic`GO:0043137^biological_process^DNA replication, removal of RNA primer`GO:0000731^biological_process^DNA synthesis involved in DNA repair`GO:0000723^biological_process^telomere maintenance . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls:9316:comp38676_c0 comp38676_c0_seq1 sp|O94252|YOR2_SCHPO^O94252^Q:233-3,H:150-226^100%ID^E:2e-37^RecName: Full=Uncharacterized protein P8B7.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_O94252^O94252^Q:233-3,H:150-226^100%ID^E:9e-36^RecName: Full=Uncharacterized protein P8B7.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0005737^cellular_component^cytoplasm . . .
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe_runGOseqOnly/Trinotate_report.xls-9317-comp38723_c0 comp38723_c0_seq1 sp|Q9UUB3|MEU18_SCHPO^Q9UUB3^Q:244-44,H:487-553^100%ID^E:6e-33^RecName: Full=Meiotic expression up-regulated protein 18;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces UniRef90_Q9UUB3^Q9UUB3^Q:244-44,H:487-553^100%ID^E:2e-31^RecName: Full=Meiotic expression up-regulated protein 18;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces . . . . . . . . . GO:0005737^cellular_component^cytoplasm`GO:0005635^cellular_component^nuclear envelope`GO:0007126^biological_process^meiotic nuclear division . . .
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/diauxic_shift_induced.GOseq.depleted-23-GO:0036211 0.999036335625056 0.00373669829425931 4 111 protein modification process BP 0.9999999999 0.629191087087332 BP protein modification process
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/diauxic_shift_induced.GOseq.depleted:24:GO:0044451 1 0.00380355698233528 0 45 nucleoplasm part CC 0.9999999999 0.629191087087332 CC nucleoplasm part
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_GOSeq_trinotate_pipe/Spombe/diauxic_shift_induced.GOseq.depleted-25-GO:0065007 0.998157163178543 0.00386401895857113 19 227 biological regulation BP 0.9999999999 0.629191087087332 BP biological regulation
##############################################
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DTU/test_for_cor.sh-12-
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DTU/test_for_cor.sh:13:cor=`cat $file`
trinityrnaseq-2.11.0+dfsg/trinity_ext_sample_data/test_DTU/test_for_cor.sh-14-
##############################################
trinityrnaseq-2.11.0+dfsg/trinity-plugins/bamsifter/bamsifter-4-
trinityrnaseq-2.11.0+dfsg/trinity-plugins/bamsifter/bamsifter:5:BAMSIFTERDIR=`dirname $0`
trinityrnaseq-2.11.0+dfsg/trinity-plugins/bamsifter/bamsifter-6-
##############################################
trinityrnaseq-2.11.0+dfsg/Butterfly/Butterfly/src/run_butterfly_nonJar.sh-2-
trinityrnaseq-2.11.0+dfsg/Butterfly/Butterfly/src/run_butterfly_nonJar.sh:3:bindir=`dirname $0`
trinityrnaseq-2.11.0+dfsg/Butterfly/Butterfly/src/run_butterfly_nonJar.sh-4-
##############################################
trinityrnaseq-2.11.0+dfsg/Butterfly/Butterfly/src/run_NWalign.sh-2-
trinityrnaseq-2.11.0+dfsg/Butterfly/Butterfly/src/run_NWalign.sh:3:dirname=`dirname $0`
trinityrnaseq-2.11.0+dfsg/Butterfly/Butterfly/src/run_NWalign.sh-4-
##############################################
trinityrnaseq-2.11.0+dfsg/Butterfly/src/run_NWalign.sh-2-
trinityrnaseq-2.11.0+dfsg/Butterfly/src/run_NWalign.sh:3:dirname=`dirname $0`
trinityrnaseq-2.11.0+dfsg/Butterfly/src/run_NWalign.sh-4-
##############################################
trinityrnaseq-2.11.0+dfsg/Butterfly/src/run_butterfly_nonJar.sh-2-
trinityrnaseq-2.11.0+dfsg/Butterfly/src/run_butterfly_nonJar.sh:3:bindir=`dirname $0`
trinityrnaseq-2.11.0+dfsg/Butterfly/src/run_butterfly_nonJar.sh-4-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/plot_expression_patterns.pl-113-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/plot_expression_patterns.pl:114: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/plot_expression_patterns.pl-115- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/matrix_to_gene_plots.pl-123-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/matrix_to_gene_plots.pl:124: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/matrix_to_gene_plots.pl-125- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl-14-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl:15:my @DE_result_files = `cat $MMDIFF_files`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl-16-chomp @DE_result_files;
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl-69-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl:70: my $num_lines = `wc -l $expr_matrix_file | cut -f1 -d ' '`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/mmdiff_to_pairwise_summary.pl-71- chomp $num_lines;
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/EBSeq_to_pairwise_summary.pl-67-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/EBSeq_to_pairwise_summary.pl:68: my $num_lines = `wc -l $expr_matrix_file | cut -f1 -d ' '`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/EBSeq_to_pairwise_summary.pl-69- chomp $num_lines;
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/edgeR_to_pairwise_summary.pl-66-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/edgeR_to_pairwise_summary.pl:67: my $num_lines = `wc -l $expr_matrix_file | cut -f1 -d ' '`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/pairwise_summaries/edgeR_to_pairwise_summary.pl-68- chomp $num_lines;
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl-135- my $cmd = "R --no-save --no-restore --no-site-file --no-init-file -q < $out_rscript";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl:136: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl-137- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/cluster_sample_data/runMe.sh-2-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/cluster_sample_data/runMe.sh:3:PROG=`dirname $0`/../PtR
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/cluster_sample_data/runMe.sh-4-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/TissueEnrichment/DE_results_to_pairwise_summary.pl-106-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/TissueEnrichment/DE_results_to_pairwise_summary.pl:107: my $num_lines = `$cmd`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/TissueEnrichment/DE_results_to_pairwise_summary.pl-108- if ($?) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-51- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl:52: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-53- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-100-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl:101: $gene_tree_text = `cat $gene_tree`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-102- $gene_tree_text =~ s/;\s+$//g;
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-112- else {
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl:113: $gene_tree_text = `cat $gene_tree.ids_converted`;
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-114- }
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl-133- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl:134: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl-135-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_DE_analysis.pl-753- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_DE_analysis.pl:754: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_DE_analysis.pl-755-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl-130- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl:131: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl-132-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/prep_n_run_GOplot.pl-242-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/prep_n_run_GOplot.pl:243: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/prep_n_run_GOplot.pl-244-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/PtR-1698- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/PtR:1699: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/PtR-1700-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-267- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl:268: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-269-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-416- print STDERR "WARNING, go-seq failed for $condA_up_subset_file: $@";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl:417: system("touch $condA_up_subset_file.FAILED");
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-418- }
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-430- print STDERR "WARNING, go-seq failed for $condB_up_subset_file: $@";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl:431: system("touch $condB_up_subset_file.FAILED");
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-432- }
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-444- print STDERR "Warning, go-seq failed for $either_subset_file: $@";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl:445: system("touch $either_subset_file.FAILED");
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-446- }
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-558-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl:559: my ($header, $line) = split(/\n/, `head -n2 $result_file`);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/analyze_diff_expr.pl-560-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/cut_tree_into_clusters.pl-141- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/cut_tree_into_clusters.pl:142: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/cut_tree_into_clusters.pl-143- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl-209- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl:210: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl-211- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl-107- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl:108: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl-109- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_GOseq.pl-194- my $cmd = "Rscript $Rscript";
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_GOseq.pl:195: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/run_GOseq.pl-196- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/stratify_diff_expression.pl-40-
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/stratify_diff_expression.pl:41: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/DifferentialExpression/stratify_diff_expression.pl-42- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl-76- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl:77: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl-78- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/SuperTranscripts/_misc/aln_before_after.pl-36-
trinityrnaseq-2.11.0+dfsg/Analysis/SuperTranscripts/_misc/aln_before_after.pl:37: my $ret = system("clustalw2 $filename");
trinityrnaseq-2.11.0+dfsg/Analysis/SuperTranscripts/_misc/aln_before_after.pl-38- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_query_top_hit_extractor.pl-189- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_query_top_hit_extractor.pl:190: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_query_top_hit_extractor.pl-191- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-128-
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:129: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-130- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-146- $gene =~ s/GENE://;
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:147: foreach my $asm (@assemblies) {
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:148: $asm =~ s/ASM://;
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-149- }
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-188- }
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:189: foreach my $asm (@asms) {
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:190: $asm =~ s/ASM://;
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-191- }
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-213-
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:214: foreach my $asm (@asms) {
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-215-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-253-
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:254: foreach my $asm (keys %asm_links) {
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-255- my @genes = @{$asm_links{$asm}};
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-264-####
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:265:sub overlaps_asm {
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-266- my ($mapping, $report_aref) = @_;
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-93-foreach my $tool (@required_tools) {
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl:94: my $path = `which $tool`;
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-95- unless ($path =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-155-
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl:156: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-157-
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/compute_oracle.pl-21-
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/compute_oracle.pl:22:my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/compute_oracle.pl-23-if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl-35- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl:36: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl-37-
##############################################
trinityrnaseq-2.11.0+dfsg/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh-2-
trinityrnaseq-2.11.0+dfsg/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh:3:docker run --rm -v`pwd`:`pwd` trinityrnaseq/trinityrnaseq Trinity --seqType fq --single `pwd`/reads.left.fq.gz --max_memory 1G --CPU ${CPU} --output `pwd`/trinity_out_dir_docker
trinityrnaseq-2.11.0+dfsg/sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_docker.sh-4-
##############################################
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.3.2/Build.PL-29- close($out);
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.3.2/Build.PL:30: system("mv $tfile $file");
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.3.2/Build.PL-31-}
##############################################
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.3.2/trinity-plugins.makefile.clean.patch-19-- tar -zxvf ${JELLYFISH_CODE}.tar.gz && ln -sf ${JELLYFISH_CODE} tmp.jellyfish
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.3.2/trinity-plugins.makefile.clean.patch:20:- cd ./tmp.jellyfish/ && ./configure CC=gcc CXX=g++ --enable-static --disable-shared --prefix=`pwd` && $(MAKE) LDFLAGS="-lpthread -all-static" AM_CPPFLAGS="-Wall -Wnon-virtual-dtor -I"`pwd`"/include"
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.3.2/trinity-plugins.makefile.clean.patch-21-- mv tmp.jellyfish jellyfish
##############################################
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/Build.PL-29- close($out);
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/Build.PL:30: system("mv $tfile $file");
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/Build.PL-31-}
##############################################
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch-23-- tar -zxvf ${JELLYFISH_CODE}.tar.gz && ln -sf ${JELLYFISH_CODE} tmp.jellyfish
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch:24:- cd ./tmp.jellyfish/ && ./configure CC=gcc CXX=g++ --enable-static --disable-shared --prefix=`pwd` && $(MAKE) LDFLAGS="-lpthread -all-static" AM_CPPFLAGS="-Wall -Wnon-virtual-dtor -I"`pwd`"/include"
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch-25-- mv tmp.jellyfish jellyfish
##############################################
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch-32-+# tar -zxvf ${JELLYFISH_CODE}.tar.gz && ln -sf ${JELLYFISH_CODE} tmp.jellyfish
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch:33:+# cd ./tmp.jellyfish/ && ./configure CC=gcc CXX=g++ --enable-static --disable-shared --prefix=`pwd` && $(MAKE) LDFLAGS="-lpthread -all-static" AM_CPPFLAGS="-Wall -Wnon-virtual-dtor -I"`pwd`"/include"
trinityrnaseq-2.11.0+dfsg/bioconda_recipe/trinity/2.2.0/trinity-plugins.makefile.clean.patch-34-+# mv tmp.jellyfish jellyfish
##############################################
trinityrnaseq-2.11.0+dfsg/debian/patches/butterfly-175-+
trinityrnaseq-2.11.0+dfsg/debian/patches/butterfly:176:+dirname=`dirname $0`
trinityrnaseq-2.11.0+dfsg/debian/patches/butterfly-177-+
##############################################
trinityrnaseq-2.11.0+dfsg/debian/patches/butterfly-186-+
trinityrnaseq-2.11.0+dfsg/debian/patches/butterfly:187:+bindir=`dirname $0`
trinityrnaseq-2.11.0+dfsg/debian/patches/butterfly-188-+
##############################################
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths-2532-@@ -19,7 +18,7 @@
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths:2533: my @files = `cat $files_listing_file`;
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths-2534- chomp @files;
##############################################
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths-2582-
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths:2583:- my $pruned_ref_edges = `$FindBin::Bin/util/find_pruned_edges_shouldve_kept.pl $ref_kmers_file $log_file`;
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths:2584:+ my $pruned_ref_edges = `/usr/lib/trinityrnaseq/util/misc/sim_test_framework/util/find_pruned_edges_shouldve_kept.pl $ref_kmers_file $log_file`;
trinityrnaseq-2.11.0+dfsg/debian/patches/fix_system_paths-2585-
##############################################
trinityrnaseq-2.11.0+dfsg/debian/patches/unfix_num_of_cores-377-+
trinityrnaseq-2.11.0+dfsg/debian/patches/unfix_num_of_cores:378:+docker run --rm -v`pwd`:`pwd` trinityrnaseq/trinityrnaseq Trinity --seqType fq --single `pwd`/reads.left.fq.gz --max_memory 1G --CPU ${CPU} --output `pwd`/trinity_out_dir_docker
trinityrnaseq-2.11.0+dfsg/debian/patches/unfix_num_of_cores-379-
##############################################
trinityrnaseq-2.11.0+dfsg/debian/tests/run-tests-4-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
trinityrnaseq-2.11.0+dfsg/debian/tests/run-tests:5: AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
trinityrnaseq-2.11.0+dfsg/debian/tests/run-tests-6-fi
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/STAR_genomeSAindexNbases/util/misc/run_STAR_via_samples_file.pl-82-
trinityrnaseq-2.11.0+dfsg/.pc/STAR_genomeSAindexNbases/util/misc/run_STAR_via_samples_file.pl:83: my $num_contigs = `grep '>' $genome | wc -l`;
trinityrnaseq-2.11.0+dfsg/.pc/STAR_genomeSAindexNbases/util/misc/run_STAR_via_samples_file.pl-84- chomp $num_contigs;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/STAR_genomeSAindexNbases/util/misc/run_STAR_via_samples_file.pl-178-
trinityrnaseq-2.11.0+dfsg/.pc/STAR_genomeSAindexNbases/util/misc/run_STAR_via_samples_file.pl:179: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/STAR_genomeSAindexNbases/util/misc/run_STAR_via_samples_file.pl-180- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/jellyfish-path/util/misc/run_jellyfish.pl-61-
trinityrnaseq-2.11.0+dfsg/.pc/jellyfish-path/util/misc/run_jellyfish.pl:62: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/jellyfish-path/util/misc/run_jellyfish.pl-63-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-911-
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:912:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-913-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-949- foreach my $trinity_tool ("ParaFly", "seqtk-trinity") {
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:950: my $loc = `which $trinity_tool`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-951- unless ($loc =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1449- if ($MKDIR_OUTDIR_FLAG && basename($output_directory) =~ /trinity/i) { # ensure outdirectory as trinity in the name, just to be sure we dont delete something non-trinity related!!!
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:1450: system("rm -rf $output_directory");
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1451- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1454- if ($MKDIR_PHASE1_OUTDIR_FLAG && basename($TRINITY_PHASE1_OUTDIR =~ /trinity/i) && -d $TRINITY_PHASE1_OUTDIR) {
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:1455: system("rm -rf $TRINITY_PHASE1_OUTDIR");
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1456- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1627- if (!$count_of_reads){
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:1628: $count_of_reads = `wc -l < $inchworm_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1629- chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1668- # create an inchworm target that lacks the LRs
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:1669: my $num_long_reads = `grep -c '^\>LR\\\$' $trinity_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1670- #print STDERR "num long reads: $num_long_reads :: $trinity_target_fa\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1955-
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:1956: my $long_read_count = `grep '>LR' $chrysalis_reads_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-1957- chomp $long_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-2467- if (! -s $read_count_file) {
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:2468: my $count_of_reads = `wc -l < $reads`;chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-2469- $count_of_reads/=2; # assume fasta; two lines per read
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-2475- else {
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:2476: $pm_read_count = `cat $read_count_file`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-2477- chomp $pm_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-2822- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:2823: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-2824- my $end_time = time();
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3062- my $tempp="";
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:3063: $tempp=`ldd $INCHWORM_DIR/inchworm 2>/dev/null | grep "libgomp"`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3064- if ($tempp eq "") {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3095- }
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:3096: $pm_inchworm_kmers = `cat $output_directory/inchworm.kmer_count`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3097- print FILE " Number of unique KMERs: $pm_inchworm_kmers";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3148- warn "Running CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:3149: exec($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3150- warn "COLLECTL FINISHED BEFORE KILL WAS CALLED\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3641- #my $url = "http://rt-trinity.uits.indiana.edu/flask/version/" . $VERSION . "?timestamp=" . time;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:3642: #my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3643-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3649- my $url = "https://api.github.com/repos/trinityrnaseq/trinityrnaseq/releases";
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:3650: my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1 `;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3651-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3809-
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity:3810: my $last_iworm_header = `grep '>' $inchworm_contigs_file | tail -n1`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/Trinity-3811-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/compare_bflies.pl-85- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/compare_bflies.pl:86: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/compare_bflies.pl-87-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-225-
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl:226: my $num_entries = `grep '>' $ref_trans_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-227- $num_entries =~ /(\d+)/ or die "Error, cannot parse number of entries from $ref_trans_fa";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-332- $cmd = "grep '>' trinity_out_dir.Trinity.fasta | wc -l";
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl:333: my $result = `$cmd`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-334- $result =~ s/^\s+//g;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-342- &process_cmd("echo $cmd > FL.cmd");
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl:343: my @results = `$cmd`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-344- print @results;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-384- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl:385: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-386- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-425-
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl:426: my $pruned_ref_edges = `$FindBin::Bin/util/find_pruned_edges_shouldve_kept.pl $ref_kmers_file $log_file`;
trinityrnaseq-2.11.0+dfsg/.pc/update-paths/util/misc/sim_test_framework/run_Trinity_eval.pl-427-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-94-foreach my $tool (@required_tools) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl:95: my $path = `which $tool`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-96- unless ($path =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-156-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl:157: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/FL_trans_analysis_pipeline.pl-158-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-129-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:130: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-131- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-147- $gene =~ s/GENE://;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:148: foreach my $asm (@assemblies) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:149: $asm =~ s/ASM://;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-150- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-189- }
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:190: foreach my $asm (@asms) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:191: $asm =~ s/ASM://;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-192- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-214-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:215: foreach my $asm (@asms) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-216-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-254-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:255: foreach my $asm (keys %asm_links) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-256- my @genes = @{$asm_links{$asm}};
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-265-####
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl:266:sub overlaps_asm {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/util/blat_full_length_mappings.pl-267- my ($mapping, $report_aref) = @_;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/compute_oracle.pl-23-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/compute_oracle.pl:24:my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/compute_oracle.pl-25-if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl-36- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl:37: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.pl-38-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-52- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl:53: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-54- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-101-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl:102: $gene_tree_text = `cat $gene_tree`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-103- $gene_tree_text =~ s/;\s+$//g;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-113- else {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl:114: $gene_tree_text = `cat $gene_tree.ids_converted`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl-115- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl-134- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl:135: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl-136-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_DE_analysis.pl-754- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_DE_analysis.pl:755: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_DE_analysis.pl-756-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl-132- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl:133: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl-134-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/prep_n_run_GOplot.pl-243-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/prep_n_run_GOplot.pl:244: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/prep_n_run_GOplot.pl-245-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/PtR-1699- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/PtR:1700: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/PtR-1701-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-268- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl:269: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-270-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-417- print STDERR "WARNING, go-seq failed for $condA_up_subset_file: $@";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl:418: system("touch $condA_up_subset_file.FAILED");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-419- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-431- print STDERR "WARNING, go-seq failed for $condB_up_subset_file: $@";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl:432: system("touch $condB_up_subset_file.FAILED");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-433- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-445- print STDERR "Warning, go-seq failed for $either_subset_file: $@";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl:446: system("touch $either_subset_file.FAILED");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-447- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-559-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl:560: my ($header, $line) = split(/\n/, `head -n2 $result_file`);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/analyze_diff_expr.pl-561-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/cut_tree_into_clusters.pl-142- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/cut_tree_into_clusters.pl:143: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/cut_tree_into_clusters.pl-144- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl-210- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl:211: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl-212- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl-109- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl:110: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/extract_GO_enriched_genes.pl-111- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_GOseq.pl-195- my $cmd = "Rscript $Rscript";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_GOseq.pl:196: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/run_GOseq.pl-197- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/stratify_diff_expression.pl-41-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/stratify_diff_expression.pl:42: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Analysis/DifferentialExpression/stratify_diff_expression.pl-43- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-911-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:912:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-913-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-949- foreach my $trinity_tool ("ParaFly", "seqtk-trinity") {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:950: my $loc = `which $trinity_tool`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-951- unless ($loc =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1449- if ($MKDIR_OUTDIR_FLAG && basename($output_directory) =~ /trinity/i) { # ensure outdirectory as trinity in the name, just to be sure we dont delete something non-trinity related!!!
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:1450: system("rm -rf $output_directory");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1451- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1454- if ($MKDIR_PHASE1_OUTDIR_FLAG && basename($TRINITY_PHASE1_OUTDIR =~ /trinity/i) && -d $TRINITY_PHASE1_OUTDIR) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:1455: system("rm -rf $TRINITY_PHASE1_OUTDIR");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1456- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1627- if (!$count_of_reads){
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:1628: $count_of_reads = `wc -l < $inchworm_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1629- chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1668- # create an inchworm target that lacks the LRs
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:1669: my $num_long_reads = `grep -c '^\>LR\\\$' $trinity_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1670- #print STDERR "num long reads: $num_long_reads :: $trinity_target_fa\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1955-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:1956: my $long_read_count = `grep '>LR' $chrysalis_reads_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-1957- chomp $long_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-2467- if (! -s $read_count_file) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:2468: my $count_of_reads = `wc -l < $reads`;chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-2469- $count_of_reads/=2; # assume fasta; two lines per read
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-2475- else {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:2476: $pm_read_count = `cat $read_count_file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-2477- chomp $pm_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-2822- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:2823: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-2824- my $end_time = time();
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3062- my $tempp="";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:3063: $tempp=`ldd $INCHWORM_DIR/inchworm 2>/dev/null | grep "libgomp"`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3064- if ($tempp eq "") {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3095- }
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:3096: $pm_inchworm_kmers = `cat $output_directory/inchworm.kmer_count`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3097- print FILE " Number of unique KMERs: $pm_inchworm_kmers";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3148- warn "Running CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:3149: exec($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3150- warn "COLLECTL FINISHED BEFORE KILL WAS CALLED\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3641- #my $url = "http://rt-trinity.uits.indiana.edu/flask/version/" . $VERSION . "?timestamp=" . time;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:3642: #my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3643-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3649- my $url = "https://api.github.com/repos/trinityrnaseq/trinityrnaseq/releases";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:3650: my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1 `;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3651-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3809-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity:3810: my $last_iworm_header = `grep '>' $inchworm_contigs_file | tail -n1`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/Trinity-3811-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl-403- foreach my $tool (@tools) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl:404: my $p = `which $tool`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl-405- unless ($p =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl-563- unless (-d $output_dir) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl:564: system("mkdir -p $output_dir");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl-565- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl-725-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl:726: my $ret = system("bash", "-o", "pipefail", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/align_and_estimate_abundance.pl-727-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl-118-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl:119: `touch $checkpoint`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blast_outfmt6_group_segments.to_Markov_Clustering.pl-120- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/fastQ_rand_subset.pl-87- if ($fastq_file =~ /\.gz$/) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/fastQ_rand_subset.pl:88: $linecount = `gunzip -c $fastq_file | wc -l`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/fastQ_rand_subset.pl-89- }
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/fastQ_rand_subset.pl-90- else {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/fastQ_rand_subset.pl:91: $linecount = `cat $fastq_file | wc -l`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/fastQ_rand_subset.pl-92- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/illustrate_ref_comparison.pl-181- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/illustrate_ref_comparison.pl:182: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/illustrate_ref_comparison.pl-183-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/map_gtf_transcripts_to_genome_annots.pl-536-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/map_gtf_transcripts_to_genome_annots.pl:537: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/map_gtf_transcripts_to_genome_annots.pl-538- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_HISAT.pl-211-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_HISAT.pl:212: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_HISAT.pl-213- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR.pl-83-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR.pl:84:my $star_prog = `which $star_path`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR.pl-85-chomp $star_prog;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR.pl-199-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR.pl:200: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR.pl-201- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR_via_samples_file.pl-82-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR_via_samples_file.pl:83: my $num_contigs = `grep '>' $genome | wc -l`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR_via_samples_file.pl-84- chomp $num_contigs;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR_via_samples_file.pl-180-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR_via_samples_file.pl:181: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_STAR_via_samples_file.pl-182- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_read_simulator_per_fasta_entry.pl-65-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_read_simulator_per_fasta_entry.pl:66: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_read_simulator_per_fasta_entry.pl-67- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_illuminaPE_from_transcripts.pl-264-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_illuminaPE_from_transcripts.pl:265: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_illuminaPE_from_transcripts.pl-266-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_illuminaPE_from_transcripts.wgsim.pl-167-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_illuminaPE_from_transcripts.wgsim.pl:168: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_illuminaPE_from_transcripts.wgsim.pl-169-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sort_fastq.pl-55- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sort_fastq.pl:56: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sort_fastq.pl-57-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/transcript_coverage_UTR_trimmer.pl-155-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/transcript_coverage_UTR_trimmer.pl:156: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/transcript_coverage_UTR_trimmer.pl-157-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-87-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl:88:my $num_seqs = `grep '>' $transcript_db | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-89-$num_seqs =~ s/\s//g;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-149- my $checkpoint = $thread_info_href->{checkpoint};
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl:150: system("touch $checkpoint");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-151- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-198- my $checkpoint = $thread_info_href->{checkpoint};
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl:199: system("touch $checkpoint");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-200- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-272-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl:273: system("touch $checkpoint_file");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/process_BLAT_alignments.pl-274-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/blat_to_sam.pl-63- foreach my $prog (@required_progs) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/blat_to_sam.pl:64: my $path = `which $prog`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/blat_to_sam.pl-65- unless ($path =~ /^\//) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/blat_to_sam.pl-115- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/blat_to_sam.pl:116: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/blat_util/blat_to_sam.pl-117-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/align_reads_launch_igv.pl-42-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/align_reads_launch_igv.pl:43: system("igv.sh -g $target_fa $alignments_file");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/align_reads_launch_igv.pl-44-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/filter_similar_seqs_expr_and_strand_aware.pl-171- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/filter_similar_seqs_expr_and_strand_aware.pl:172: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/filter_similar_seqs_expr_and_strand_aware.pl-173- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/TophatCufflinksWrapper.pl-189-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/TophatCufflinksWrapper.pl:190: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/TophatCufflinksWrapper.pl-191- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/genome_gff3_to_gene_gff3_partitions.pl-106-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/genome_gff3_to_gene_gff3_partitions.pl:107: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/genome_gff3_to_gene_gff3_partitions.pl-108- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/plot_expressed_gene_dist.pl-31-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/plot_expressed_gene_dist.pl:32: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/plot_expressed_gene_dist.pl-33- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/process_GMAP_alignments_gff3_chimeras_ok.pl-110-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/process_GMAP_alignments_gff3_chimeras_ok.pl:111: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/process_GMAP_alignments_gff3_chimeras_ok.pl-112- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_GSNAP.pl-163-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_GSNAP.pl:164: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_GSNAP.pl-165- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_HiCpipe_bowtie.pl-44-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_HiCpipe_bowtie.pl:45: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_HiCpipe_bowtie.pl-46-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_TOPHAT.pl-96- print "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_TOPHAT.pl:97: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_TOPHAT.pl-98- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_bwa.pl-100-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_bwa.pl:101: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_bwa.pl-102-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_jellyfish.pl-61-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_jellyfish.pl:62: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_jellyfish.pl-63-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_read_simulator_per_gene.pl-93-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_read_simulator_per_gene.pl:94: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_read_simulator_per_gene.pl-95- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_trimmomatic_qual_trimming.pl-100-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_trimmomatic_qual_trimming.pl:101: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/run_trimmomatic_qual_trimming.pl-102-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-18-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/info_files_to_eval_cmds.pl:19: my @files = `cat $files_listing_file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-20- chomp @files;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-30-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/info_files_to_eval_cmds.pl:31: my $line = `cat $file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/info_files_to_eval_cmds.pl-32- chomp $line;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/partition_target_transcripts.pl-121- if ($restrict_to_genes_file) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/partition_target_transcripts.pl:122: my @gene_ids = `cat $restrict_to_genes_file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/partition_target_transcripts.pl-123- chomp @gene_ids;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/partition_target_transcripts.pl-263- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/partition_target_transcripts.pl:264: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/partition_target_transcripts.pl-265- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-225-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl:226: my $num_entries = `grep '>' $ref_trans_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-227- $num_entries =~ /(\d+)/ or die "Error, cannot parse number of entries from $ref_trans_fa";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-332- $cmd = "grep '>' trinity_out_dir.Trinity.fasta | wc -l";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl:333: my $result = `$cmd`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-334- $result =~ s/^\s+//g;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-342- &process_cmd("echo $cmd > FL.cmd");
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl:343: my @results = `$cmd`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-344- print @results;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-384- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl:385: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-386- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-425-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl:426: my $pruned_ref_edges = `$FindBin::Bin/util/find_pruned_edges_shouldve_kept.pl $ref_kmers_file $log_file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_Trinity_eval.pl-427-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_simulate_reads.wgsim.pl-140- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_simulate_reads.wgsim.pl:141: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/run_simulate_reads.wgsim.pl-142- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/write_simulate_read_commands.pl-15-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/write_simulate_read_commands.pl:16: my @ref_files = `cat $target_trans_files_file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/sim_test_framework/write_simulate_read_commands.pl-17- chomp @ref_files;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_reads_sam_and_fa.pl-616- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_reads_sam_and_fa.pl:617: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/misc/simulate_reads_sam_and_fa.pl-618- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_to_frag_coords.pl-84-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_to_frag_coords.pl:85:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_to_frag_coords.pl-86-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_to_frag_coords.pl-267- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_to_frag_coords.pl:268: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_to_frag_coords.pl-269- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/ordered_fragment_coords_to_jaccard.pl-126- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/ordered_fragment_coords_to_jaccard.pl:127: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/ordered_fragment_coords_to_jaccard.pl-128- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/run_TMM_scale_matrix.pl-101- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/run_TMM_scale_matrix.pl:102: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/run_TMM_scale_matrix.pl-103-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/run_UpperQuartileNormalization_matrix.pl-106- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/run_UpperQuartileNormalization_matrix.pl:107: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/run_UpperQuartileNormalization_matrix.pl-108-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl-216-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl:217: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/prep_rnaseq_alignments_for_genome_assisted_assembly.pl-218-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/salmon_runner.pl-43- if ($@) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/salmon_runner.pl:44: my $errmsg = `cat $stderr_file`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/salmon_runner.pl-45- die "Error, cmd: $cmd failed with msg: $errmsg $@";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_ordered_pair_jaccard.pl-119- print STDERR "CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_ordered_pair_jaccard.pl:120: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/SAM_ordered_pair_jaccard.pl-121- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/bowtie2_wrapper.pl-165- foreach my $prog (@required_progs) {
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/bowtie2_wrapper.pl:166: my $path = `which $prog`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/bowtie2_wrapper.pl-167- unless ($path =~ /^\//) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/bowtie2_wrapper.pl-292-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/bowtie2_wrapper.pl:293: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/bowtie2_wrapper.pl-294-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/inchworm_transcript_splitter.pl-163-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/inchworm_transcript_splitter.pl:164: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/inchworm_transcript_splitter.pl-165-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl-85-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl:86: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/support_scripts/process_GMAP_alignments_gff3_chimeras_ok.pl-87- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl-263-
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl:264:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl-265-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl-452- print STDERR "-removing tmp dir $tmp_directory\n";
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl:453: `rm -rf $tmp_directory`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl-454- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl-788- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl:789: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/insilico_read_normalization.pl-790- my $end_time = time();
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/abundance_estimates_to_matrix.pl-94- # allow for a file listing the various files.
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/abundance_estimates_to_matrix.pl:95: @files = `cat $quant_files`;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/abundance_estimates_to_matrix.pl-96- chomp @files;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/abundance_estimates_to_matrix.pl-382- print STDERR $cmd;
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/abundance_estimates_to_matrix.pl:383: my $ret = system($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/fix_system_paths/util/abundance_estimates_to_matrix.pl-384- if ($ret) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-910-
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:911:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-912-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-948- foreach my $trinity_tool ("ParaFly", "seqtk-trinity") {
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:949: my $loc = `which $trinity_tool`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-950- unless ($loc =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1448- if ($MKDIR_OUTDIR_FLAG && basename($output_directory) =~ /trinity/i) { # ensure outdirectory as trinity in the name, just to be sure we dont delete something non-trinity related!!!
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:1449: system("rm -rf $output_directory");
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1450- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1453- if ($MKDIR_PHASE1_OUTDIR_FLAG && basename($TRINITY_PHASE1_OUTDIR =~ /trinity/i) && -d $TRINITY_PHASE1_OUTDIR) {
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:1454: system("rm -rf $TRINITY_PHASE1_OUTDIR");
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1455- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1626- if (!$count_of_reads){
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:1627: $count_of_reads = `wc -l < $inchworm_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1628- chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1667- # create an inchworm target that lacks the LRs
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:1668: my $num_long_reads = `grep -c '^\>LR\\\$' $trinity_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1669- #print STDERR "num long reads: $num_long_reads :: $trinity_target_fa\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1954-
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:1955: my $long_read_count = `grep '>LR' $chrysalis_reads_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-1956- chomp $long_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-2466- if (! -s $read_count_file) {
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:2467: my $count_of_reads = `wc -l < $reads`;chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-2468- $count_of_reads/=2; # assume fasta; two lines per read
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-2474- else {
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:2475: $pm_read_count = `cat $read_count_file`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-2476- chomp $pm_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-2821- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:2822: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-2823- my $end_time = time();
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3061- my $tempp="";
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:3062: $tempp=`ldd $INCHWORM_DIR/inchworm 2>/dev/null | grep "libgomp"`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3063- if ($tempp eq "") {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3094- }
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:3095: $pm_inchworm_kmers = `cat $output_directory/inchworm.kmer_count`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3096- print FILE " Number of unique KMERs: $pm_inchworm_kmers";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3147- warn "Running CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:3148: exec($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3149- warn "COLLECTL FINISHED BEFORE KILL WAS CALLED\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3640- #my $url = "http://rt-trinity.uits.indiana.edu/flask/version/" . $VERSION . "?timestamp=" . time;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:3641: #my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3642-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3648- my $url = "https://api.github.com/repos/trinityrnaseq/trinityrnaseq/releases";
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:3649: my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1 `;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3650-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3808-
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity:3809: my $last_iworm_header = `grep '>' $inchworm_contigs_file | tail -n1`;
trinityrnaseq-2.11.0+dfsg/.pc/disable-version-check/Trinity-3810-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-910-
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:911:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-912-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-948- foreach my $trinity_tool ("ParaFly", "seqtk-trinity") {
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:949: my $loc = `which $trinity_tool`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-950- unless ($loc =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1448- if ($MKDIR_OUTDIR_FLAG && basename($output_directory) =~ /trinity/i) { # ensure outdirectory as trinity in the name, just to be sure we dont delete something non-trinity related!!!
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:1449: system("rm -rf $output_directory");
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1450- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1453- if ($MKDIR_PHASE1_OUTDIR_FLAG && basename($TRINITY_PHASE1_OUTDIR =~ /trinity/i) && -d $TRINITY_PHASE1_OUTDIR) {
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:1454: system("rm -rf $TRINITY_PHASE1_OUTDIR");
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1455- }
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1626- if (!$count_of_reads){
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:1627: $count_of_reads = `wc -l < $inchworm_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1628- chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1667- # create an inchworm target that lacks the LRs
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:1668: my $num_long_reads = `grep -c '^\>LR\\\$' $trinity_target_fa`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1669- #print STDERR "num long reads: $num_long_reads :: $trinity_target_fa\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1954-
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:1955: my $long_read_count = `grep '>LR' $chrysalis_reads_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-1956- chomp $long_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-2466- if (! -s $read_count_file) {
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:2467: my $count_of_reads = `wc -l < $reads`;chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-2468- $count_of_reads/=2; # assume fasta; two lines per read
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-2474- else {
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:2475: $pm_read_count = `cat $read_count_file`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-2476- chomp $pm_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-2821- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:2822: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-2823- my $end_time = time();
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3035- my $tempp="";
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:3036: $tempp=`ldd $INCHWORM_DIR/inchworm 2>/dev/null | grep "libgomp"`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3037- if ($tempp eq "") {
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3068- }
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:3069: $pm_inchworm_kmers = `cat $output_directory/inchworm.kmer_count`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3070- print FILE " Number of unique KMERs: $pm_inchworm_kmers";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3121- warn "Running CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:3122: exec($cmd);
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3123- warn "COLLECTL FINISHED BEFORE KILL WAS CALLED\n";
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3614- #my $url = "http://rt-trinity.uits.indiana.edu/flask/version/" . $VERSION . "?timestamp=" . time;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:3615: #my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3616-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3622- my $url = "https://api.github.com/repos/trinityrnaseq/trinityrnaseq/releases";
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:3623: my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1 `;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3624-
##############################################
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3782-
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity:3783: my $last_iworm_header = `grep '>' $inchworm_contigs_file | tail -n1`;
trinityrnaseq-2.11.0+dfsg/.pc/adjust-trimmomatic-adapters-path/Trinity-3784-
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-910-
trinityrnaseq-2.11.0+dfsg/Trinity:911:my $sort_exec = &COMMON::get_sort_exec($CPU);
trinityrnaseq-2.11.0+dfsg/Trinity-912-
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-948- foreach my $trinity_tool ("ParaFly", "seqtk-trinity") {
trinityrnaseq-2.11.0+dfsg/Trinity:949: my $loc = `which $trinity_tool`;
trinityrnaseq-2.11.0+dfsg/Trinity-950- unless ($loc =~ /\w/) {
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-1448- if ($MKDIR_OUTDIR_FLAG && basename($output_directory) =~ /trinity/i) { # ensure outdirectory as trinity in the name, just to be sure we dont delete something non-trinity related!!!
trinityrnaseq-2.11.0+dfsg/Trinity:1449: system("rm -rf $output_directory");
trinityrnaseq-2.11.0+dfsg/Trinity-1450- }
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-1453- if ($MKDIR_PHASE1_OUTDIR_FLAG && basename($TRINITY_PHASE1_OUTDIR =~ /trinity/i) && -d $TRINITY_PHASE1_OUTDIR) {
trinityrnaseq-2.11.0+dfsg/Trinity:1454: system("rm -rf $TRINITY_PHASE1_OUTDIR");
trinityrnaseq-2.11.0+dfsg/Trinity-1455- }
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-1626- if (!$count_of_reads){
trinityrnaseq-2.11.0+dfsg/Trinity:1627: $count_of_reads = `wc -l < $inchworm_target_fa`;
trinityrnaseq-2.11.0+dfsg/Trinity-1628- chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-1667- # create an inchworm target that lacks the LRs
trinityrnaseq-2.11.0+dfsg/Trinity:1668: my $num_long_reads = `grep -c '^\>LR\\\$' $trinity_target_fa`;
trinityrnaseq-2.11.0+dfsg/Trinity-1669- #print STDERR "num long reads: $num_long_reads :: $trinity_target_fa\n";
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-1954-
trinityrnaseq-2.11.0+dfsg/Trinity:1955: my $long_read_count = `grep '>LR' $chrysalis_reads_fa | wc -l `;
trinityrnaseq-2.11.0+dfsg/Trinity-1956- chomp $long_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-2466- if (! -s $read_count_file) {
trinityrnaseq-2.11.0+dfsg/Trinity:2467: my $count_of_reads = `wc -l < $reads`;chomp($count_of_reads); #AP: grep is expensive; one test took 2h...!
trinityrnaseq-2.11.0+dfsg/Trinity-2468- $count_of_reads/=2; # assume fasta; two lines per read
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-2474- else {
trinityrnaseq-2.11.0+dfsg/Trinity:2475: $pm_read_count = `cat $read_count_file`;
trinityrnaseq-2.11.0+dfsg/Trinity-2476- chomp $pm_read_count;
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-2821- my $start_time = time();
trinityrnaseq-2.11.0+dfsg/Trinity:2822: my $ret = system("bash", "-c", $cmd);
trinityrnaseq-2.11.0+dfsg/Trinity-2823- my $end_time = time();
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-3035- my $tempp="";
trinityrnaseq-2.11.0+dfsg/Trinity:3036: $tempp=`ldd $INCHWORM_DIR/inchworm 2>/dev/null | grep "libgomp"`;
trinityrnaseq-2.11.0+dfsg/Trinity-3037- if ($tempp eq "") {
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-3068- }
trinityrnaseq-2.11.0+dfsg/Trinity:3069: $pm_inchworm_kmers = `cat $output_directory/inchworm.kmer_count`;
trinityrnaseq-2.11.0+dfsg/Trinity-3070- print FILE " Number of unique KMERs: $pm_inchworm_kmers";
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-3121- warn "Running CMD: $cmd\n";
trinityrnaseq-2.11.0+dfsg/Trinity:3122: exec($cmd);
trinityrnaseq-2.11.0+dfsg/Trinity-3123- warn "COLLECTL FINISHED BEFORE KILL WAS CALLED\n";
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-3614- #my $url = "http://rt-trinity.uits.indiana.edu/flask/version/" . $VERSION . "?timestamp=" . time;
trinityrnaseq-2.11.0+dfsg/Trinity:3615: #my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1`;
trinityrnaseq-2.11.0+dfsg/Trinity-3616-
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-3622- my $url = "https://api.github.com/repos/trinityrnaseq/trinityrnaseq/releases";
trinityrnaseq-2.11.0+dfsg/Trinity:3623: my $content = `curl -m 5 --connect-timeout 5 --max-time 5 -s "$url" 2>&1 `;
trinityrnaseq-2.11.0+dfsg/Trinity-3624-
##############################################
trinityrnaseq-2.11.0+dfsg/Trinity-3782-
trinityrnaseq-2.11.0+dfsg/Trinity:3783: my $last_iworm_header = `grep '>' $inchworm_contigs_file | tail -n1`;
trinityrnaseq-2.11.0+dfsg/Trinity-3784-