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              grep rough audit - static analysis tool
                  v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
vdjtools-1.2.1+git20190311/src/main/groovy/com/antigenomics/vdjtools/misc/RUtil.groovy-87-            if (new File(PACKAGES_PATH).exists())
vdjtools-1.2.1+git20190311/src/main/groovy/com/antigenomics/vdjtools/misc/RUtil.groovy:88:                pw.println(separatorsToSystem(".libPaths(\"$PACKAGES_PATH\")"))
vdjtools-1.2.1+git20190311/src/main/groovy/com/antigenomics/vdjtools/misc/RUtil.groovy-89-
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vdjtools-1.2.1+git20190311/gradlew-13-while [ -h "$PRG" ] ; do
vdjtools-1.2.1+git20190311/gradlew:14:    ls=`ls -ld "$PRG"`
vdjtools-1.2.1+git20190311/gradlew:15:    link=`expr "$ls" : '.*-> \(.*\)$'`
vdjtools-1.2.1+git20190311/gradlew-16-    if expr "$link" : '/.*' > /dev/null; then
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vdjtools-1.2.1+git20190311/gradlew-18-    else
vdjtools-1.2.1+git20190311/gradlew:19:        PRG=`dirname "$PRG"`"/$link"
vdjtools-1.2.1+git20190311/gradlew-20-    fi
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vdjtools-1.2.1+git20190311/gradlew-22-SAVED="`pwd`"
vdjtools-1.2.1+git20190311/gradlew:23:cd "`dirname \"$PRG\"`/" >/dev/null
vdjtools-1.2.1+git20190311/gradlew-24-APP_HOME="`pwd -P`"
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vdjtools-1.2.1+git20190311/gradlew-27-APP_NAME="Gradle"
vdjtools-1.2.1+git20190311/gradlew:28:APP_BASE_NAME=`basename "$0"`
vdjtools-1.2.1+git20190311/gradlew-29-
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vdjtools-1.2.1+git20190311/gradlew-113-if $cygwin ; then
vdjtools-1.2.1+git20190311/gradlew:114:    APP_HOME=`cygpath --path --mixed "$APP_HOME"`
vdjtools-1.2.1+git20190311/gradlew:115:    CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
vdjtools-1.2.1+git20190311/gradlew:116:    JAVACMD=`cygpath --unix "$JAVACMD"`
vdjtools-1.2.1+git20190311/gradlew-117-
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vdjtools-1.2.1+git20190311/gradlew-132-    for arg in "$@" ; do
vdjtools-1.2.1+git20190311/gradlew:133:        CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
vdjtools-1.2.1+git20190311/gradlew:134:        CHECK2=`echo "$arg"|egrep -c "^-"`                                 ### Determine if an option
vdjtools-1.2.1+git20190311/gradlew-135-
vdjtools-1.2.1+git20190311/gradlew-136-        if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then                    ### Added a condition
vdjtools-1.2.1+git20190311/gradlew:137:            eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
vdjtools-1.2.1+git20190311/gradlew-138-        else
vdjtools-1.2.1+git20190311/gradlew:139:            eval `echo args$i`="\"$arg\""
vdjtools-1.2.1+git20190311/gradlew-140-        fi
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vdjtools-1.2.1+git20190311/vdjtools-16-
vdjtools-1.2.1+git20190311/vdjtools:17:    cd `dirname $targetFile`
vdjtools-1.2.1+git20190311/vdjtools:18:    targetFile=`basename $targetFile`
vdjtools-1.2.1+git20190311/vdjtools-19-
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vdjtools-1.2.1+git20190311/vdjtools-22-    do
vdjtools-1.2.1+git20190311/vdjtools:23:        targetFile=`readlink $targetFile`
vdjtools-1.2.1+git20190311/vdjtools:24:        cd `dirname $targetFile`
vdjtools-1.2.1+git20190311/vdjtools:25:        targetFile=`basename $targetFile`
vdjtools-1.2.1+git20190311/vdjtools-26-    done
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vdjtools-1.2.1+git20190311/debian/tests/run-unit-test-6-if [ "$AUTOPKGTEST_TMP" = "" ] ; then
vdjtools-1.2.1+git20190311/debian/tests/run-unit-test:7:  AUTOPKGTEST_TMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
vdjtools-1.2.1+git20190311/debian/tests/run-unit-test-8-  trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM