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grep rough audit - static analysis tool
v2.8 written by @Wireghoul
=================================[justanotherhacker.com]===
vistrails-3.0~git+9dc22bd/vistrails/tests/run_on_mac.sh-10-shift
vistrails-3.0~git+9dc22bd/vistrails/tests/run_on_mac.sh:11:THIS_DIR=`dirname $0`
vistrails-3.0~git+9dc22bd/vistrails/tests/run_on_mac.sh-12-PYTHON_EXEC_PATH="Contents/MacOS/python"
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vistrails-3.0~git+9dc22bd/vistrails/core/modules/vistrails_module.py-315- # stores whether the output of the module should be annotated in the
vistrails-3.0~git+9dc22bd/vistrails/core/modules/vistrails_module.py:316: # execution log
vistrails-3.0~git+9dc22bd/vistrails/core/modules/vistrails_module.py-317- self.annotate_output = False
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vistrails-3.0~git+9dc22bd/vistrails/gui/pipeline_view.py-3154- ##########################################################################
vistrails-3.0~git+9dc22bd/vistrails/gui/pipeline_view.py:3155: # Execution reporting API
vistrails-3.0~git+9dc22bd/vistrails/gui/pipeline_view.py-3156-
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vistrails-3.0~git+9dc22bd/vistrails/db/services/prov.py-493-
vistrails-3.0~git+9dc22bd/vistrails/db/services/prov.py:494: # executions
vistrails-3.0~git+9dc22bd/vistrails/db/services/prov.py-495- for exec_ in log._db_workflow_execs:
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vistrails-3.0~git+9dc22bd/examples/api/ipython-notebook.ipynb-391- "source": [
vistrails-3.0~git+9dc22bd/examples/api/ipython-notebook.ipynb:392: "# Execution\n",
vistrails-3.0~git+9dc22bd/examples/api/ipython-notebook.ipynb-393- "\n",
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vistrails-3.0~git+9dc22bd/scripts/unzip_vistrail.sh-37-mkdir $2
vistrails-3.0~git+9dc22bd/scripts/unzip_vistrail.sh:38:zipfile=`basename $1 .vt`.zip
vistrails-3.0~git+9dc22bd/scripts/unzip_vistrail.sh-39-cp $1 $2/$zipfile
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vistrails-3.0~git+9dc22bd/scripts/run_vistrails_batch_xvfb.sh-58-echo "ps -eaf | grep $Xvfb_CMD | grep $VIRTUAL_DISPLAY | awk '{print \$2}'"
vistrails-3.0~git+9dc22bd/scripts/run_vistrails_batch_xvfb.sh:59:pid=`ps -eaf | grep $Xvfb_CMD | grep $VIRTUAL_DISPLAY | awk '{print \$2}'`
vistrails-3.0~git+9dc22bd/scripts/run_vistrails_batch_xvfb.sh-60-if [ "$pid" ]; then
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vistrails-3.0~git+9dc22bd/scripts/run_vistrails_batch_xvfb.sh-69- #Make sure it started
vistrails-3.0~git+9dc22bd/scripts/run_vistrails_batch_xvfb.sh:70: pid=`ps -eaf | grep $Xvfb_CMD | grep $VIRTUAL_DISPLAY | awk '{print $2}'`
vistrails-3.0~git+9dc22bd/scripts/run_vistrails_batch_xvfb.sh-71- if [ "$pid" ]; then
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vistrails-3.0~git+9dc22bd/scripts/convert_files/convert_files.sh-39-
vistrails-3.0~git+9dc22bd/scripts/convert_files/convert_files.sh:40:for i in `cat $file_list`; do
vistrails-3.0~git+9dc22bd/scripts/convert_files/convert_files.sh:41: DIR=`dirname $i`
vistrails-3.0~git+9dc22bd/scripts/convert_files/convert_files.sh:42: VT_FILE=$DIR/`basename $i .vt`_fixed.vt
vistrails-3.0~git+9dc22bd/scripts/convert_files/convert_files.sh-43- echo $i
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vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh-73-echo "ps -eaf | grep $Xvfb_CMD | grep $VIRTUAL_DISPLAY | awk '{print \$2}'"
vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh:74:pid=`ps -eaf | grep $Xvfb_CMD | grep $VIRTUAL_DISPLAY | awk '{print \$2}'`
vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh-75-if [ "$pid" ]; then
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vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh-84- #Make sure it started
vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh:85: pid=`ps -eaf | grep $Xvfb_CMD | grep $VIRTUAL_DISPLAY | awk '{print $2}'`
vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh-86- if [ "$pid" ]; then
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vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh-105-#finally kill it if it still did not respond because it was hanging
vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh:106:kill -9 `cat $PID`
vistrails-3.0~git+9dc22bd/scripts/start_vistrails_xvfb.sh-107-
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vistrails-3.0~git+9dc22bd/scripts/start_vistrails.sh-76-#finally kill it if it still did not respond because it was hanging
vistrails-3.0~git+9dc22bd/scripts/start_vistrails.sh:77:kill -9 `cat $PID`
vistrails-3.0~git+9dc22bd/scripts/start_vistrails.sh-78-
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vistrails-3.0~git+9dc22bd/scripts/watch_vistrail_servers.py-66- proc2 = Popen(["grep", "vistrails_server"], stdin=proc1.stdout, stdout=PIPE)
vistrails-3.0~git+9dc22bd/scripts/watch_vistrail_servers.py:67: proc3 = Popen(["awk", "{print $13}"], stdin=proc2.stdout, stdout=PIPE)
vistrails-3.0~git+9dc22bd/scripts/watch_vistrail_servers.py-68- out, err = proc3.communicate()
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vistrails-3.0~git+9dc22bd/extensions/mediawiki/functions.php-50-
vistrails-3.0~git+9dc22bd/extensions/mediawiki/functions.php:51: $data = curl_exec($ch);
vistrails-3.0~git+9dc22bd/extensions/mediawiki/functions.php-52- if (curl_errno($ch)) {
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vistrails-3.0~git+9dc22bd/extensions/mediawiki/vistrailsExtension.php-185- username . ' "' . $vtid .':' . $version .'"';
vistrails-3.0~git+9dc22bd/extensions/mediawiki/vistrailsExtension.php:186: $result = exec($setVariables.$mainCommand . ' 2>&1', $output, $result);
vistrails-3.0~git+9dc22bd/extensions/mediawiki/vistrailsExtension.php-187- }
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vistrails-3.0~git+9dc22bd/doc/usersguide/cltools.rst-192-
vistrails-3.0~git+9dc22bd/doc/usersguide/cltools.rst:193:1) Create a new directory in ``$HOME/.vistrails/userpackages/``
vistrails-3.0~git+9dc22bd/doc/usersguide/cltools.rst-194-2) Copy ``__init__.py`` and ``init.py`` from ``vistrails/packages/CLTools`` to this new directory
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vistrails-3.0~git+9dc22bd/doc/usersguide/batch.rst-165-
vistrails-3.0~git+9dc22bd/doc/usersguide/batch.rst:166:``python vistrails/run.py -b examples/head.vt:aliases --parameters="isovalue=30\$&\$diffuse_color=0.8, 0.4, 0.2"``
vistrails-3.0~git+9dc22bd/doc/usersguide/batch.rst-167-
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vistrails-3.0~git+9dc22bd/doc/usersguide/getting_started.rst-135-third-party developers. To do that, just drop the Python module (single file)
vistrails-3.0~git+9dc22bd/doc/usersguide/getting_started.rst:136:or package (i.e. directory) in ``$HOME/.vistrails/userpackages/`` (|vistrails|
vistrails-3.0~git+9dc22bd/doc/usersguide/getting_started.rst-137-should automatically create this folder on the first run).
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vistrails-3.0~git+9dc22bd/.pc/fixes.patch/scripts/watch_vistrail_servers.py-66- proc2 = Popen(["grep", "vistrails_server"], stdin=proc1.stdout, stdout=PIPE)
vistrails-3.0~git+9dc22bd/.pc/fixes.patch/scripts/watch_vistrail_servers.py:67: proc3 = Popen(["awk", "{print $13}"], stdin=proc2.stdout, stdout=PIPE)
vistrails-3.0~git+9dc22bd/.pc/fixes.patch/scripts/watch_vistrail_servers.py-68- out, err = proc3.communicate()